RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 UTS2O95399 124 aa13.84□□□□□ -0.19
CLSTN3-213ENST00000541953 NTN1O95631 604 aa13.84□□□□□ -0.19
CLSTN3-213ENST00000541953 ANGPTL1O95841 491 aa13.84□□□□□ -0.19
CLSTN3-213ENST00000541953 IL11P20809 199 aa13.84□□□□□ -0.19
CLSTN3-213ENST00000541953 PSMA4P25789 261 aaKnown RBP13.84□□□□□ -0.19
CLSTN3-213ENST00000541953 MPIP34949 423 aa13.84□□□□□ -0.19
CLSTN3-213ENST00000541953 EIF1AXP47813 144 aaKnown RBP13.84□□□□□ -0.19
CLSTN3-213ENST00000541953 ZNF763Q0D2J5 394 aa13.84□□□□□ -0.19
CLSTN3-213ENST00000541953 LCP2Q13094 533 aa13.84□□□□□ -0.19
CLSTN3-213ENST00000541953 DECR1Q16698 335 aa13.84□□□□□ -0.19
CLSTN3-213ENST00000541953 CYP27C1Q4G0S4 372 aa13.84□□□□□ -0.19
CLSTN3-213ENST00000541953 ANKRD26P1Q6NSI1 321 aa13.84□□□□□ -0.19
CLSTN3-213ENST00000541953 PLEKHM3Q6ZWE6 761 aa13.84□□□□□ -0.19
CLSTN3-213ENST00000541953 ZNF551Q7Z340 670 aaPredicted RBP13.84□□□□□ -0.19
CLSTN3-213ENST00000541953 GATSQ8NAP1 163 aa13.84□□□□□ -0.19
CLSTN3-213ENST00000541953 OR10D3Q8NH80 312 aa13.84□□□□□ -0.19
CLSTN3-213ENST00000541953 FBXO30Q8TB52 745 aa13.84□□□□□ -0.19
CLSTN3-213ENST00000541953 RAB3IL1Q8TBN0 382 aa13.84□□□□□ -0.19
CLSTN3-213ENST00000541953 ELP4Q96EB1 424 aa13.84□□□□□ -0.19
CLSTN3-213ENST00000541953 PLPPR2Q96GM1 343 aa13.84□□□□□ -0.19
CLSTN3-213ENST00000541953 EGLN2Q96KS0 407 aa13.84□□□□□ -0.19
CLSTN3-213ENST00000541953 LMF2Q9BU23 707 aaKnown RBP13.84□□□□□ -0.19
CLSTN3-213ENST00000541953 STMN4Q9H169 189 aaPredicted RBP13.84□□□□□ -0.19
CLSTN3-213ENST00000541953 TMEM185BQ9H7F4 350 aa13.84□□□□□ -0.19
CLSTN3-213ENST00000541953 EQTNQ9NQ60 294 aa13.84□□□□□ -0.19
CLSTN3-213ENST00000541953 ZNF701Q9NV72 531 aaPredicted RBP13.84□□□□□ -0.19
CLSTN3-213ENST00000541953 DDX18Q9NVP1 670 aaKnown RBP13.84□□□□□ -0.19
CLSTN3-213ENST00000541953 FBXO34Q9NWN3 711 aa13.84□□□□□ -0.19
CLSTN3-213ENST00000541953 PTGDR2Q9Y5Y4 395 aa13.84□□□□□ -0.19
CLSTN3-213ENST00000541953 FREM1Q5H8C1 2179 aa13.83□□□□□ -0.19
CLSTN3-213ENST00000541953 CHD3Q12873 2000 aaKnown RBP13.83□□□□□ -0.2
CLSTN3-213ENST00000541953 SS18L1O75177 396 aaPredicted RBP13.83□□□□□ -0.2
CLSTN3-213ENST00000541953 SOX30O94993 753 aa13.83□□□□□ -0.2
CLSTN3-213ENST00000541953 SNRPAP09012 282 aaKnown RBP13.83□□□□□ -0.2
CLSTN3-213ENST00000541953 IMPDH1P20839 514 aa13.83□□□□□ -0.2
CLSTN3-213ENST00000541953 SHC1P29353 583 aa13.83□□□□□ -0.2
CLSTN3-213ENST00000541953 PRKAA2P54646 552 aa13.83□□□□□ -0.2
CLSTN3-213ENST00000541953 MRPS22P82650 360 aaKnown RBP13.83□□□□□ -0.2
CLSTN3-213ENST00000541953 TNK1Q13470 666 aa13.83□□□□□ -0.2
CLSTN3-213ENST00000541953 TSC22D1Q15714 1073 aa13.83□□□□□ -0.2
CLSTN3-213ENST00000541953 ZNF385BQ569K4 471 aa13.83□□□□□ -0.2
CLSTN3-213ENST00000541953 BEX5Q5H9J7 111 aa13.83□□□□□ -0.2
CLSTN3-213ENST00000541953 CXXC5Q7LFL8 322 aaKnown RBP13.83□□□□□ -0.2
CLSTN3-213ENST00000541953 WFDC8Q8IUA0 241 aa13.83□□□□□ -0.2
CLSTN3-213ENST00000541953 SAMD14Q8IZD0 417 aaPredicted RBP13.83□□□□□ -0.2
CLSTN3-213ENST00000541953 LRRN4CLQ8ND94 238 aa13.83□□□□□ -0.2
CLSTN3-213ENST00000541953 OR6K3Q8NGY3 331 aa13.83□□□□□ -0.2
CLSTN3-213ENST00000541953 LILRB1Q8NHL6 650 aaPredicted RBP13.83□□□□□ -0.2
CLSTN3-213ENST00000541953 POC1BQ8TC44 478 aa13.83□□□□□ -0.2
CLSTN3-213ENST00000541953 IFT81Q8WYA0 676 aa13.83□□□□□ -0.2
CLSTN3-213ENST00000541953 NEUROG1Q92886 237 aa13.83□□□□□ -0.2
CLSTN3-213ENST00000541953 CAVIN3Q969G5 261 aa13.83□□□□□ -0.2
CLSTN3-213ENST00000541953 L3HYPDHQ96EM0 354 aa13.83□□□□□ -0.2
CLSTN3-213ENST00000541953 OTUB1Q96FW1 271 aaPredicted RBP13.83□□□□□ -0.2
CLSTN3-213ENST00000541953 FMO2Q99518 471 aa13.83□□□□□ -0.2
CLSTN3-213ENST00000541953 TMEM204Q9BSN7 226 aa13.83□□□□□ -0.2
CLSTN3-213ENST00000541953 MYNNQ9NPC7 610 aa13.83□□□□□ -0.2
CLSTN3-213ENST00000541953 PLSCR4Q9NRQ2 329 aa13.83□□□□□ -0.2
CLSTN3-213ENST00000541953 SIRT5Q9NXA8 310 aa13.83□□□□□ -0.2
CLSTN3-213ENST00000541953 EMCNQ9ULC0 261 aa13.83□□□□□ -0.2
CLSTN3-213ENST00000541953 AP4B1Q9Y6B7 739 aa13.83□□□□□ -0.2
CLSTN3-213ENST00000541953 GIMAP1-GIMAP5A0A087WTJ2 511 aa13.82□□□□□ -0.2
CLSTN3-213ENST00000541953 TNFSF11O14788 317 aa13.82□□□□□ -0.2
CLSTN3-213ENST00000541953 CXCL13O43927 109 aa13.82□□□□□ -0.2
CLSTN3-213ENST00000541953 PAX1P15863 534 aa13.82□□□□□ -0.2
CLSTN3-213ENST00000541953 ATP5F1P24539 256 aaPredicted RBP13.82□□□□□ -0.2
CLSTN3-213ENST00000541953 GABRA3P34903 492 aa13.82□□□□□ -0.2
CLSTN3-213ENST00000541953 MAP3K8P41279 467 aa13.82□□□□□ -0.2
CLSTN3-213ENST00000541953 RNF144AP50876 292 aaPredicted RBP13.82□□□□□ -0.2
CLSTN3-213ENST00000541953 EEFSECP57772 596 aaKnown RBP13.82□□□□□ -0.2
CLSTN3-213ENST00000541953 PSPHP78330 225 aa13.82□□□□□ -0.2
CLSTN3-213ENST00000541953 PRR5P85299 388 aa13.82□□□□□ -0.2
CLSTN3-213ENST00000541953 SGCBQ16585 318 aa13.82□□□□□ -0.2
CLSTN3-213ENST00000541953 SPDYAQ5MJ70 313 aa13.82□□□□□ -0.2
CLSTN3-213ENST00000541953 MFSD12Q6NUT3 480 aa13.82□□□□□ -0.2
CLSTN3-213ENST00000541953 SH2D5Q6ZV89 423 aa13.82□□□□□ -0.2
CLSTN3-213ENST00000541953 OR4C3Q8NH37 302 aa13.82□□□□□ -0.2
CLSTN3-213ENST00000541953 GFM2Q969S9 779 aaKnown RBP13.82□□□□□ -0.2
CLSTN3-213ENST00000541953 CIDECQ96AQ7 238 aaPredicted RBP13.82□□□□□ -0.2
CLSTN3-213ENST00000541953 GIMAP5Q96F15 307 aa13.82□□□□□ -0.2
CLSTN3-213ENST00000541953 TBL1XR1Q9BZK7 514 aa13.82□□□□□ -0.2
CLSTN3-213ENST00000541953 ACTR6Q9GZN1 396 aa13.82□□□□□ -0.2
CLSTN3-213ENST00000541953 C12orf49Q9H741 205 aa13.82□□□□□ -0.2
CLSTN3-213ENST00000541953 PTGES2Q9H7Z7 377 aa13.82□□□□□ -0.2
CLSTN3-213ENST00000541953 Q9N2J8 555 aa13.82□□□□□ -0.2
CLSTN3-213ENST00000541953 MID1IP1Q9NPA3 183 aa13.82□□□□□ -0.2
CLSTN3-213ENST00000541953 TAS2R7Q9NYW3 318 aa13.82□□□□□ -0.2
CLSTN3-213ENST00000541953 ANK2Q01484 3957 aa13.81□□□□□ -0.2
CLSTN3-213ENST00000541953 A0A087WUV0 522 aaPredicted RBP13.81□□□□□ -0.2
CLSTN3-213ENST00000541953 A0A0J9YW62 118 aa13.81□□□□□ -0.2
CLSTN3-213ENST00000541953 EXOC1LA0A1B0GW35 172 aa13.81□□□□□ -0.2
CLSTN3-213ENST00000541953 HS3ST1O14792 307 aa13.81□□□□□ -0.2
CLSTN3-213ENST00000541953 OXSR1O95747 527 aaPredicted RBP13.81□□□□□ -0.2
CLSTN3-213ENST00000541953 ENO1P06733 434 aaKnown RBP13.81□□□□□ -0.2
CLSTN3-213ENST00000541953 ACP2P11117 423 aa13.81□□□□□ -0.2
CLSTN3-213ENST00000541953 TAC1P20366 129 aa13.81□□□□□ -0.2
CLSTN3-213ENST00000541953 ATP5J2P56134 94 aa13.81□□□□□ -0.2
CLSTN3-213ENST00000541953 RPS3AP61247 264 aaKnown RBP13.81□□□□□ -0.2
CLSTN3-213ENST00000541953 HSPB3Q12988 150 aa13.81□□□□□ -0.2
CLSTN3-213ENST00000541953 PLPPR5Q32ZL2 321 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms