RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 CXXC5Q7LFL8 322 aaKnown RBP12.17□□□□□ -0.46
SS18-204ENST00000539244 MARCH3Q86UD3 253 aa12.17□□□□□ -0.46
SS18-204ENST00000539244 LCA5Q86VQ0 697 aa12.17□□□□□ -0.46
SS18-204ENST00000539244 ZNF611Q8N823 705 aa12.17□□□□□ -0.46
SS18-204ENST00000539244 ADGRG7Q96K78 797 aa12.17□□□□□ -0.46
SS18-204ENST00000539244 TMEM204Q9BSN7 226 aa12.17□□□□□ -0.46
SS18-204ENST00000539244 EBPLQ9BY08 206 aa12.17□□□□□ -0.46
SS18-204ENST00000539244 CXorf56Q9H5V9 222 aa12.17□□□□□ -0.46
SS18-204ENST00000539244 PAQR5Q9NXK6 330 aaPredicted RBP12.17□□□□□ -0.46
SS18-204ENST00000539244 STOML1Q9UBI4 398 aa12.17□□□□□ -0.46
SS18-204ENST00000539244 WBP11Q9Y2W2 641 aaKnown RBP12.17□□□□□ -0.46
SS18-204ENST00000539244 EMC9Q9Y3B6 208 aa12.17□□□□□ -0.46
SS18-204ENST00000539244 CHD3Q12873 2000 aaKnown RBP12.16□□□□□ -0.46
SS18-204ENST00000539244 COL6A5A8TX70 2615 aa12.16□□□□□ -0.46
SS18-204ENST00000539244 FBN1P35555 2871 aaKnown RBP12.16□□□□□ -0.46
SS18-204ENST00000539244 CCDC151A5D8V7 595 aa12.16□□□□□ -0.46
SS18-204ENST00000539244 TTC36A6NLP5 189 aa12.16□□□□□ -0.46
SS18-204ENST00000539244 POC1B-GALNT4F8VUJ3 575 aa12.16□□□□□ -0.46
SS18-204ENST00000539244 ANGPTL1O95841 491 aa12.16□□□□□ -0.46
SS18-204ENST00000539244 SNRPAP09012 282 aaKnown RBP12.16□□□□□ -0.46
SS18-204ENST00000539244 ATP5F1P24539 256 aaPredicted RBP12.16□□□□□ -0.46
SS18-204ENST00000539244 SLC6A8P48029 635 aa12.16□□□□□ -0.46
SS18-204ENST00000539244 KRTAP1-1Q07627 177 aa12.16□□□□□ -0.46
SS18-204ENST00000539244 LCP2Q13094 533 aa12.16□□□□□ -0.46
SS18-204ENST00000539244 ZNHIT3Q15649 155 aaPredicted RBP12.16□□□□□ -0.46
SS18-204ENST00000539244 SGCBQ16585 318 aa12.16□□□□□ -0.46
SS18-204ENST00000539244 TEX35Q5T0J7 233 aa12.16□□□□□ -0.46
SS18-204ENST00000539244 APOOLQ6UXV4 268 aa12.16□□□□□ -0.46
SS18-204ENST00000539244 SLC22A9Q8IVM8 553 aa12.16□□□□□ -0.46
SS18-204ENST00000539244 HOXB13Q92826 284 aaPredicted RBP12.16□□□□□ -0.46
SS18-204ENST00000539244 ELP4Q96EB1 424 aa12.16□□□□□ -0.46
SS18-204ENST00000539244 L3HYPDHQ96EM0 354 aa12.16□□□□□ -0.46
SS18-204ENST00000539244 AMDHD1Q96NU7 426 aa12.16□□□□□ -0.46
SS18-204ENST00000539244 TBL1XR1Q9BZK7 514 aa12.16□□□□□ -0.46
SS18-204ENST00000539244 GLIPR2Q9H4G4 154 aa12.16□□□□□ -0.46
SS18-204ENST00000539244 HHATLQ9HCP6 504 aa12.16□□□□□ -0.46
SS18-204ENST00000539244 MYNNQ9NPC7 610 aa12.16□□□□□ -0.46
SS18-204ENST00000539244 FANCFQ9NPI8 374 aa12.16□□□□□ -0.46
SS18-204ENST00000539244 GLRX2Q9NS18 164 aa12.16□□□□□ -0.46
SS18-204ENST00000539244 DDX18Q9NVP1 670 aaKnown RBP12.16□□□□□ -0.46
SS18-204ENST00000539244 TMEM216Q9P0N5 145 aa12.16□□□□□ -0.46
SS18-204ENST00000539244 TIMM22Q9Y584 194 aa12.16□□□□□ -0.46
SS18-204ENST00000539244 ATRQ13535 2644 aa12.16□□□□□ -0.46
SS18-204ENST00000539244 A0A087WZY1 265 aa12.15□□□□□ -0.46
SS18-204ENST00000539244 C7orf72A4D263 438 aa12.15□□□□□ -0.46
SS18-204ENST00000539244 HS3ST1O14792 307 aa12.15□□□□□ -0.46
SS18-204ENST00000539244 ADAMDEC1O15204 470 aa12.15□□□□□ -0.46
SS18-204ENST00000539244 UTS2O95399 124 aa12.15□□□□□ -0.46
SS18-204ENST00000539244 PLAUP00749 431 aa12.15□□□□□ -0.46
SS18-204ENST00000539244 PSMB1P20618 241 aaKnown RBP12.15□□□□□ -0.46
SS18-204ENST00000539244 NTSP30990 170 aa12.15□□□□□ -0.46
SS18-204ENST00000539244 MAP3K8P41279 467 aa12.15□□□□□ -0.46
SS18-204ENST00000539244 EIF1AXP47813 144 aaKnown RBP12.15□□□□□ -0.46
SS18-204ENST00000539244 PRKAA2P54646 552 aa12.15□□□□□ -0.46
SS18-204ENST00000539244 CKAP4Q07065 602 aaKnown RBP12.15□□□□□ -0.46
SS18-204ENST00000539244 C2orf80Q0P641 193 aa12.15□□□□□ -0.46
SS18-204ENST00000539244 EXOC3L2Q2M3D2 409 aa12.15□□□□□ -0.46
SS18-204ENST00000539244 CTU2Q2VPK5 515 aaKnown RBP12.15□□□□□ -0.46
SS18-204ENST00000539244 SYT10Q6XYQ8 523 aa12.15□□□□□ -0.46
SS18-204ENST00000539244 BEND4Q6ZU67 534 aa12.15□□□□□ -0.46
SS18-204ENST00000539244 GTPBP8Q8N3Z3 284 aaPredicted RBP12.15□□□□□ -0.46
SS18-204ENST00000539244 LRRN4CLQ8ND94 238 aa12.15□□□□□ -0.46
SS18-204ENST00000539244 OR10D3Q8NH80 312 aa12.15□□□□□ -0.46
SS18-204ENST00000539244 FAM76AQ8TAV0 307 aa12.15□□□□□ -0.46
SS18-204ENST00000539244 FMO2Q99518 471 aa12.15□□□□□ -0.46
SS18-204ENST00000539244 C3orf14Q9HBI5 128 aa12.15□□□□□ -0.46
SS18-204ENST00000539244 MIEF1Q9NQG6 463 aa12.15□□□□□ -0.46
SS18-204ENST00000539244 SONP18583 2426 aaKnown RBP12.14□□□□□ -0.47
SS18-204ENST00000539244 A0A087WUV0 522 aaPredicted RBP12.14□□□□□ -0.47
SS18-204ENST00000539244 SHISA8B8ZZ34 492 aa12.14□□□□□ -0.47
SS18-204ENST00000539244 ALG1L2C9J202 215 aa12.14□□□□□ -0.47
SS18-204ENST00000539244 EIF1AYO14602 144 aaKnown RBP12.14□□□□□ -0.47
SS18-204ENST00000539244 CRLF1O75462 422 aa12.14□□□□□ -0.47
SS18-204ENST00000539244 KCNH1O95259 989 aa12.14□□□□□ -0.47
SS18-204ENST00000539244 IGKV1D-16P01601 117 aa12.14□□□□□ -0.47
SS18-204ENST00000539244 NGFRP08138 427 aa12.14□□□□□ -0.47
SS18-204ENST00000539244 PSMA4P25789 261 aaKnown RBP12.14□□□□□ -0.47
SS18-204ENST00000539244 ECHS1P30084 290 aa12.14□□□□□ -0.47
SS18-204ENST00000539244 ATP5J2P56134 94 aa12.14□□□□□ -0.47
SS18-204ENST00000539244 CTBP2P56545 445 aa12.14□□□□□ -0.47
SS18-204ENST00000539244 BTKQ06187 659 aa12.14□□□□□ -0.47
SS18-204ENST00000539244 GRAMD1BQ3KR37 738 aa12.14□□□□□ -0.47
SS18-204ENST00000539244 LGSNQ5TDP6 509 aa12.14□□□□□ -0.47
SS18-204ENST00000539244 ADAM5Q6NVV9 412 aa12.14□□□□□ -0.47
SS18-204ENST00000539244 IKBIPQ70UQ0 350 aa12.14□□□□□ -0.47
SS18-204ENST00000539244 WDR75Q8IWA0 830 aaKnown RBP12.14□□□□□ -0.47
SS18-204ENST00000539244 PLPPR2Q96GM1 343 aa12.14□□□□□ -0.47
SS18-204ENST00000539244 KCNA7Q96RP8 456 aa12.14□□□□□ -0.47
SS18-204ENST00000539244 PRRG4Q9BZD6 226 aa12.14□□□□□ -0.47
SS18-204ENST00000539244 ACTR6Q9GZN1 396 aa12.14□□□□□ -0.47
SS18-204ENST00000539244 GSTO2Q9H4Y5 243 aa12.14□□□□□ -0.47
SS18-204ENST00000539244 MCTS1Q9ULC4 181 aaKnown RBP12.14□□□□□ -0.47
SS18-204ENST00000539244 GPR52Q9Y2T5 361 aa12.14□□□□□ -0.47
SS18-204ENST00000539244 GXYLT2A0PJZ3 443 aa12.13□□□□□ -0.47
SS18-204ENST00000539244 OVOL3O00110 214 aa12.13□□□□□ -0.47
SS18-204ENST00000539244 NKX2-2O95096 273 aa12.13□□□□□ -0.47
SS18-204ENST00000539244 PLGP00747 810 aaPredicted RBP12.13□□□□□ -0.47
SS18-204ENST00000539244 NID1P14543 1247 aa12.13□□□□□ -0.47
SS18-204ENST00000539244 GCAP28676 217 aa12.13□□□□□ -0.47
SS18-204ENST00000539244 GABRA3P34903 492 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms