RNA–Protein interactions for RNA: ENST00000528402.5

ECHDC1-220, Transcript of ethylmalonyl-CoA decarboxylase 1, humanhuman

TSL 1 (best) BASIC

Gene ECHDC1, Length 1,449 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC1-220ENST00000528402 FOXD4Q12950 439 aaPredicted RBP13.72□□□□□ -0.21
ECHDC1-220ENST00000528402 DGUOKQ16854 277 aa13.72□□□□□ -0.21
ECHDC1-220ENST00000528402 TIGD6Q17RP2 521 aa13.72□□□□□ -0.21
ECHDC1-220ENST00000528402 FLYWCH1Q4VC44 716 aa13.72□□□□□ -0.21
ECHDC1-220ENST00000528402 RPL13AP3Q6NVV1 102 aa13.72□□□□□ -0.21
ECHDC1-220ENST00000528402 WDR74Q6RFH5 385 aaPredicted RBP13.72□□□□□ -0.21
ECHDC1-220ENST00000528402 PRSS42Q7Z5A4 293 aa13.72□□□□□ -0.21
ECHDC1-220ENST00000528402 CDK20Q8IZL9 346 aa13.72□□□□□ -0.21
ECHDC1-220ENST00000528402 ABCA7Q8IZY2 2146 aa13.72□□□□□ -0.21
ECHDC1-220ENST00000528402 PIK3R3Q92569 461 aa13.72□□□□□ -0.21
ECHDC1-220ENST00000528402 DUSP23Q9BVJ7 150 aa13.72□□□□□ -0.21
ECHDC1-220ENST00000528402 C11orf16Q9NQ32 467 aa13.72□□□□□ -0.21
ECHDC1-220ENST00000528402 CUTCQ9NTM9 273 aa13.72□□□□□ -0.21
ECHDC1-220ENST00000528402 MRPS18AQ9NVS2 196 aaKnown RBP13.72□□□□□ -0.21
ECHDC1-220ENST00000528402 UCKL1Q9NWZ5 548 aa13.72□□□□□ -0.21
ECHDC1-220ENST00000528402 GPR83Q9NYM4 423 aa13.72□□□□□ -0.21
ECHDC1-220ENST00000528402 IL20Q9NYY1 176 aa13.72□□□□□ -0.21
ECHDC1-220ENST00000528402 TVP23BQ9NYZ1 205 aa13.72□□□□□ -0.21
ECHDC1-220ENST00000528402 SUSD2Q9UGT4 822 aa13.72□□□□□ -0.21
ECHDC1-220ENST00000528402 SERTAD3Q9UJW9 196 aa13.72□□□□□ -0.21
ECHDC1-220ENST00000528402 CFL2Q9Y281 166 aa13.72□□□□□ -0.21
ECHDC1-220ENST00000528402 GON4LQ3T8J9 2241 aa13.71□□□□□ -0.21
ECHDC1-220ENST00000528402 KLF4O43474 513 aa13.71□□□□□ -0.22
ECHDC1-220ENST00000528402 ENTPD6O75354 484 aa13.71□□□□□ -0.22
ECHDC1-220ENST00000528402 OR2B3O76000 313 aa13.71□□□□□ -0.22
ECHDC1-220ENST00000528402 CLPXO76031 633 aa13.71□□□□□ -0.22
ECHDC1-220ENST00000528402 SOX14O95416 240 aa13.71□□□□□ -0.22
ECHDC1-220ENST00000528402 ZNF182P17025 639 aaPredicted RBP13.71□□□□□ -0.22
ECHDC1-220ENST00000528402 PSG6Q00889 435 aa13.71□□□□□ -0.22
ECHDC1-220ENST00000528402 RHAGQ02094 409 aa13.71□□□□□ -0.22
ECHDC1-220ENST00000528402 OR1Q1Q15612 314 aa13.71□□□□□ -0.22
ECHDC1-220ENST00000528402 ZNF141Q15928 474 aa13.71□□□□□ -0.22
ECHDC1-220ENST00000528402 TIMM50Q3ZCQ8 353 aa13.71□□□□□ -0.22
ECHDC1-220ENST00000528402 CCNJQ5T5M9 372 aa13.71□□□□□ -0.22
ECHDC1-220ENST00000528402 MRPL2Q5T653 305 aaKnown RBP13.71□□□□□ -0.22
ECHDC1-220ENST00000528402 ZNF550Q7Z398 422 aa13.71□□□□□ -0.22
ECHDC1-220ENST00000528402 HMGN2P46Q86SG4 172 aa13.71□□□□□ -0.22
ECHDC1-220ENST00000528402 NLGN4XQ8N0W4 816 aa13.71□□□□□ -0.22
ECHDC1-220ENST00000528402 SLC43A2Q8N370 569 aa13.71□□□□□ -0.22
ECHDC1-220ENST00000528402 D2HGDHQ8N465 521 aa13.71□□□□□ -0.22
ECHDC1-220ENST00000528402 TCEANCQ8N8B7 351 aa13.71□□□□□ -0.22
ECHDC1-220ENST00000528402 SIMC1Q8NDZ2 872 aa13.71□□□□□ -0.22
ECHDC1-220ENST00000528402 GAB3Q8WWW8 586 aa13.71□□□□□ -0.22
ECHDC1-220ENST00000528402 SLC41A2Q96JW4 573 aa13.71□□□□□ -0.22
ECHDC1-220ENST00000528402 VSTM2LQ96N03 204 aa13.71□□□□□ -0.22
ECHDC1-220ENST00000528402 ELF4Q99607 663 aaPredicted RBP13.71□□□□□ -0.22
ECHDC1-220ENST00000528402 RHNO1Q9BSD3 238 aa13.71□□□□□ -0.22
ECHDC1-220ENST00000528402 TRIM2Q9C040 744 aa13.71□□□□□ -0.22
ECHDC1-220ENST00000528402 HOXD1Q9GZZ0 328 aa13.71□□□□□ -0.22
ECHDC1-220ENST00000528402 SPRTNQ9H040 489 aaPredicted RBP13.71□□□□□ -0.22
ECHDC1-220ENST00000528402 AMBNQ9NP70 447 aa13.71□□□□□ -0.22
ECHDC1-220ENST00000528402 ERGIC3Q9Y282 383 aa13.71□□□□□ -0.22
ECHDC1-220ENST00000528402 EML5Q05BV3 1969 aa13.71□□□□□ -0.22
ECHDC1-220ENST00000528402 TP53BP1Q12888 1972 aaPredicted RBP13.71□□□□□ -0.22
ECHDC1-220ENST00000528402 MN1Q10571 1320 aaPredicted RBP13.71□□□□□ -0.22
ECHDC1-220ENST00000528402 SPAG17Q6Q759 2223 aa13.7□□□□□ -0.22
ECHDC1-220ENST00000528402 KNL1Q8NG31 2342 aa13.7□□□□□ -0.22
ECHDC1-220ENST00000528402 HTR3EA5X5Y0 456 aa13.7□□□□□ -0.22
ECHDC1-220ENST00000528402 TMEM150CB9EJG8 249 aa13.7□□□□□ -0.22
ECHDC1-220ENST00000528402 SDC3O75056 442 aa13.7□□□□□ -0.22
ECHDC1-220ENST00000528402 LCKP06239 509 aa13.7□□□□□ -0.22
ECHDC1-220ENST00000528402 CTSBP07858 339 aa13.7□□□□□ -0.22
ECHDC1-220ENST00000528402 LCN1P31025 176 aa13.7□□□□□ -0.22
ECHDC1-220ENST00000528402 NUDT6P53370 316 aa13.7□□□□□ -0.22
ECHDC1-220ENST00000528402 OCA2Q04671 838 aa13.7□□□□□ -0.22
ECHDC1-220ENST00000528402 SQSTM1Q13501 440 aa13.7□□□□□ -0.22
ECHDC1-220ENST00000528402 ZNF267Q14586 743 aaPredicted RBP13.7□□□□□ -0.22
ECHDC1-220ENST00000528402 SNAPC1Q16533 368 aa13.7□□□□□ -0.22
ECHDC1-220ENST00000528402 MAPK14Q16539 360 aa13.7□□□□□ -0.22
ECHDC1-220ENST00000528402 ZNF829Q3KNS6 432 aaPredicted RBP13.7□□□□□ -0.22
ECHDC1-220ENST00000528402 SLC46A3Q7Z3Q1 461 aa13.7□□□□□ -0.22
ECHDC1-220ENST00000528402 NKAIN4Q8IVV8 208 aa13.7□□□□□ -0.22
ECHDC1-220ENST00000528402 GPR135Q8IZ08 494 aa13.7□□□□□ -0.22
ECHDC1-220ENST00000528402 WDR36Q8NI36 951 aaKnown RBP13.7□□□□□ -0.22
ECHDC1-220ENST00000528402 TBC1D15Q8TC07 691 aa13.7□□□□□ -0.22
ECHDC1-220ENST00000528402 TMEM163Q8TC26 289 aa13.7□□□□□ -0.22
ECHDC1-220ENST00000528402 RFKQ969G6 155 aa13.7□□□□□ -0.22
ECHDC1-220ENST00000528402 LGALS12Q96DT0 336 aa13.7□□□□□ -0.22
ECHDC1-220ENST00000528402 IL4I1Q96RQ9 567 aa13.7□□□□□ -0.22
ECHDC1-220ENST00000528402 OR10A5Q9H207 317 aa13.7□□□□□ -0.22
ECHDC1-220ENST00000528402 CTPS2Q9NRF8 586 aa13.7□□□□□ -0.22
ECHDC1-220ENST00000528402 SLC7A7Q9UM01 511 aa13.7□□□□□ -0.22
ECHDC1-220ENST00000528402 A0A1B0GVT2 93 aa13.69□□□□□ -0.22
ECHDC1-220ENST00000528402 GXYLT2A0PJZ3 443 aa13.69□□□□□ -0.22
ECHDC1-220ENST00000528402 YKT6O15498 198 aa13.69□□□□□ -0.22
ECHDC1-220ENST00000528402 FRS3O43559 492 aa13.69□□□□□ -0.22
ECHDC1-220ENST00000528402 TLX2O43763 284 aaPredicted RBP13.69□□□□□ -0.22
ECHDC1-220ENST00000528402 MED26O95402 600 aa13.69□□□□□ -0.22
ECHDC1-220ENST00000528402 RPLP0P05388 317 aaKnown RBP13.69□□□□□ -0.22
ECHDC1-220ENST00000528402 ADORA3P0DMS8 318 aa13.69□□□□□ -0.22
ECHDC1-220ENST00000528402 RBM34P42696 430 aaKnown RBP13.69□□□□□ -0.22
ECHDC1-220ENST00000528402 ATP12AP54707 1039 aa13.69□□□□□ -0.22
ECHDC1-220ENST00000528402 OR1D5P58170 312 aa13.69□□□□□ -0.22
ECHDC1-220ENST00000528402 PRKCDQ05655 676 aa13.69□□□□□ -0.22
ECHDC1-220ENST00000528402 CPEB4Q17RY0 729 aaKnown RBP eCLIP13.69□□□□□ -0.22
ECHDC1-220ENST00000528402 LYSMD4Q5XG99 296 aa13.69□□□□□ -0.22
ECHDC1-220ENST00000528402 FIGNL1Q6PIW4 674 aa13.69□□□□□ -0.22
ECHDC1-220ENST00000528402 DGAT2L6Q6ZPD8 337 aa13.69□□□□□ -0.22
ECHDC1-220ENST00000528402 QSOX2Q6ZRP7 698 aa13.69□□□□□ -0.22
ECHDC1-220ENST00000528402 WDR5BQ86VZ2 330 aa13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 78.8 ms