RNA–Protein interactions for RNA: ENST00000527916.1

CPSF1-203, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 506 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-203ENST00000527916 ENPP6Q6UWR7 440 aa9.51□□□□□ -0.89
CPSF1-203ENST00000527916 NPSR1Q6W5P4 371 aa9.51□□□□□ -0.89
CPSF1-203ENST00000527916 LARP4Q71RC2 724 aaKnown RBP eCLIP9.51□□□□□ -0.89
CPSF1-203ENST00000527916 YRDCQ86U90 279 aaKnown RBP9.51□□□□□ -0.89
CPSF1-203ENST00000527916 TRABD2AQ86V40 505 aa9.51□□□□□ -0.89
CPSF1-203ENST00000527916 SLC44A2Q8IWA5 706 aaPredicted RBP9.51□□□□□ -0.89
CPSF1-203ENST00000527916 C4orf33Q8N1A6 199 aa9.51□□□□□ -0.89
CPSF1-203ENST00000527916 ELP4Q96EB1 424 aa9.51□□□□□ -0.89
CPSF1-203ENST00000527916 AMDHD1Q96NU7 426 aa9.51□□□□□ -0.89
CPSF1-203ENST00000527916 FAM111AQ96PZ2 611 aa9.51□□□□□ -0.89
CPSF1-203ENST00000527916 IQCGQ9H095 443 aaKnown RBP9.51□□□□□ -0.89
CPSF1-203ENST00000527916 C12orf65Q9H3J6 166 aaKnown RBP9.51□□□□□ -0.89
CPSF1-203ENST00000527916 GLIPR2Q9H4G4 154 aa9.51□□□□□ -0.89
CPSF1-203ENST00000527916 LRTM1Q9HBL6 345 aa9.51□□□□□ -0.89
CPSF1-203ENST00000527916 SDHAF3Q9NRP4 125 aa9.51□□□□□ -0.89
CPSF1-203ENST00000527916 ZNF701Q9NV72 531 aaPredicted RBP9.51□□□□□ -0.89
CPSF1-203ENST00000527916 LGALS13Q9UHV8 139 aa9.51□□□□□ -0.89
CPSF1-203ENST00000527916 MRTO4Q9UKD2 239 aaKnown RBP9.51□□□□□ -0.89
CPSF1-203ENST00000527916 TMED5Q9Y3A6 229 aa9.51□□□□□ -0.89
CPSF1-203ENST00000527916 POLR3HQ9Y535 204 aaPredicted RBP9.51□□□□□ -0.89
CPSF1-203ENST00000527916 C2orf72A6NCS6 295 aa9.5□□□□□ -0.89
CPSF1-203ENST00000527916 H0Y3Z8 333 aa9.5□□□□□ -0.89
CPSF1-203ENST00000527916 CHEK2O96017 543 aa9.5□□□□□ -0.89
CPSF1-203ENST00000527916 CHMP24386 653 aa9.5□□□□□ -0.89
CPSF1-203ENST00000527916 ALDH3A1P30838 453 aa9.5□□□□□ -0.89
CPSF1-203ENST00000527916 SERPINB5P36952 375 aa9.5□□□□□ -0.89
CPSF1-203ENST00000527916 FRKP42685 505 aaPredicted RBP9.5□□□□□ -0.89
CPSF1-203ENST00000527916 ETFDHQ16134 617 aa9.5□□□□□ -0.89
CPSF1-203ENST00000527916 BCL2A1Q16548 175 aa9.5□□□□□ -0.89
CPSF1-203ENST00000527916 UGT3A2Q3SY77 523 aa9.5□□□□□ -0.89
CPSF1-203ENST00000527916 DCST1Q5T197 706 aa9.5□□□□□ -0.89
CPSF1-203ENST00000527916 KANK2Q63ZY3 851 aa9.5□□□□□ -0.89
CPSF1-203ENST00000527916 CLEC6AQ6EIG7 209 aa9.5□□□□□ -0.89
CPSF1-203ENST00000527916 WDR93Q6P2C0 686 aa9.5□□□□□ -0.89
CPSF1-203ENST00000527916 ADGRE4PQ86SQ3 457 aa9.5□□□□□ -0.89
CPSF1-203ENST00000527916 IFNEQ86WN2 208 aa9.5□□□□□ -0.89
CPSF1-203ENST00000527916 TRIM42Q8IWZ5 723 aa9.5□□□□□ -0.89
CPSF1-203ENST00000527916 GCNT2Q8N0V5 402 aa9.5□□□□□ -0.89
CPSF1-203ENST00000527916 OR14L1PQ8NHC6 308 aa9.5□□□□□ -0.89
CPSF1-203ENST00000527916 HOXB13Q92826 284 aaPredicted RBP9.5□□□□□ -0.89
CPSF1-203ENST00000527916 MTERF3Q96E29 417 aa9.5□□□□□ -0.89
CPSF1-203ENST00000527916 APOPT1Q96IL0 206 aa9.5□□□□□ -0.89
CPSF1-203ENST00000527916 EGLN2Q96KS0 407 aa9.5□□□□□ -0.89
CPSF1-203ENST00000527916 CCT7Q99832 543 aa9.5□□□□□ -0.89
CPSF1-203ENST00000527916 TUBA1CQ9BQE3 449 aa9.5□□□□□ -0.89
CPSF1-203ENST00000527916 SLC39A3Q9BRY0 314 aa9.5□□□□□ -0.89
CPSF1-203ENST00000527916 LMF2Q9BU23 707 aaKnown RBP9.5□□□□□ -0.89
CPSF1-203ENST00000527916 TUBB1Q9H4B7 451 aa9.5□□□□□ -0.89
CPSF1-203ENST00000527916 EML4Q9HC35 981 aaKnown RBP9.5□□□□□ -0.89
CPSF1-203ENST00000527916 SERHLQ9NQF3 203 aa9.5□□□□□ -0.89
CPSF1-203ENST00000527916 YAE1D1Q9NRH1 226 aa9.5□□□□□ -0.89
CPSF1-203ENST00000527916 NTMQ9P121 344 aa9.5□□□□□ -0.89
CPSF1-203ENST00000527916 ABCG2Q9UNQ0 655 aa9.5□□□□□ -0.89
CPSF1-203ENST00000527916 MAPRE3Q9UPY8 281 aa9.5□□□□□ -0.89
CPSF1-203ENST00000527916 OR10H1Q9Y4A9 318 aa9.5□□□□□ -0.89
CPSF1-203ENST00000527916 DNAJC15Q9Y5T4 150 aa9.5□□□□□ -0.89
CPSF1-203ENST00000527916 RNF223E7ERA6 249 aa9.49□□□□□ -0.89
CPSF1-203ENST00000527916 LSM1O15116 133 aaKnown RBP9.49□□□□□ -0.89
CPSF1-203ENST00000527916 CD5LO43866 347 aa9.49□□□□□ -0.89
CPSF1-203ENST00000527916 FADS1O60427 444 aa9.49□□□□□ -0.89
CPSF1-203ENST00000527916 ZIC3O60481 467 aa9.49□□□□□ -0.89
CPSF1-203ENST00000527916 NME6O75414 186 aaPredicted RBP9.49□□□□□ -0.89
CPSF1-203ENST00000527916 SMNDC1O75940 238 aaKnown RBP eCLIP9.49□□□□□ -0.89
CPSF1-203ENST00000527916 SDC1P18827 310 aa9.49□□□□□ -0.89
CPSF1-203ENST00000527916 GRK2P25098 689 aa9.49□□□□□ -0.89
CPSF1-203ENST00000527916 EVI2BP34910 448 aa9.49□□□□□ -0.89
CPSF1-203ENST00000527916 CD79BP40259 229 aa9.49□□□□□ -0.89
CPSF1-203ENST00000527916 MAP3K8P41279 467 aa9.49□□□□□ -0.89
CPSF1-203ENST00000527916 PSMD4P55036 377 aaKnown RBP9.49□□□□□ -0.89
CPSF1-203ENST00000527916 DSCR4P56555 118 aaPredicted RBP9.49□□□□□ -0.89
CPSF1-203ENST00000527916 VSNL1P62760 191 aa9.49□□□□□ -0.89
CPSF1-203ENST00000527916 FAM27E3Q08E93 113 aa9.49□□□□□ -0.89
CPSF1-203ENST00000527916 PDE7AQ13946 482 aa9.49□□□□□ -0.89
CPSF1-203ENST00000527916 VEZF1Q14119 521 aa9.49□□□□□ -0.89
CPSF1-203ENST00000527916 ZNHIT3Q15649 155 aaPredicted RBP9.49□□□□□ -0.89
CPSF1-203ENST00000527916 DECR1Q16698 335 aa9.49□□□□□ -0.89
CPSF1-203ENST00000527916 RFTN2Q52LD8 501 aaPredicted RBP9.49□□□□□ -0.89
CPSF1-203ENST00000527916 EMBQ6PCB8 327 aa9.49□□□□□ -0.89
CPSF1-203ENST00000527916 AAGABQ6PD74 315 aa9.49□□□□□ -0.89
CPSF1-203ENST00000527916 TMEM107Q6UX40 140 aa9.49□□□□□ -0.89
CPSF1-203ENST00000527916 BTLAQ7Z6A9 289 aa9.49□□□□□ -0.89
CPSF1-203ENST00000527916 GRAMD2AQ8IUY3 354 aa9.49□□□□□ -0.89
CPSF1-203ENST00000527916 FADS6Q8N9I5 356 aa9.49□□□□□ -0.89
CPSF1-203ENST00000527916 OR4N2Q8NGD1 307 aa9.49□□□□□ -0.89
CPSF1-203ENST00000527916 OR2T11Q8NH01 316 aa9.49□□□□□ -0.89
CPSF1-203ENST00000527916 OR2W6PQ8NHA6 318 aa9.49□□□□□ -0.89
CPSF1-203ENST00000527916 CEP70Q8NHQ1 597 aa9.49□□□□□ -0.89
CPSF1-203ENST00000527916 ZFP28Q8NHY6 868 aa9.49□□□□□ -0.89
CPSF1-203ENST00000527916 CDC26Q8NHZ8 85 aa9.49□□□□□ -0.89
CPSF1-203ENST00000527916 CAVIN3Q969G5 261 aa9.49□□□□□ -0.89
CPSF1-203ENST00000527916 TMEM109Q9BVC6 243 aa9.49□□□□□ -0.89
CPSF1-203ENST00000527916 AMBRA1Q9C0C7 1298 aa9.49□□□□□ -0.89
CPSF1-203ENST00000527916 REEP4Q9H6H4 257 aa9.49□□□□□ -0.89
CPSF1-203ENST00000527916 C3orf14Q9HBI5 128 aa9.49□□□□□ -0.89
CPSF1-203ENST00000527916 HHATLQ9HCP6 504 aa9.49□□□□□ -0.89
CPSF1-203ENST00000527916 Q9N2J8 555 aa9.49□□□□□ -0.89
CPSF1-203ENST00000527916 ACSS1Q9NUB1 689 aaPredicted RBP9.49□□□□□ -0.89
CPSF1-203ENST00000527916 DDX18Q9NVP1 670 aaKnown RBP9.49□□□□□ -0.89
CPSF1-203ENST00000527916 TAS2R10Q9NYW0 307 aa9.49□□□□□ -0.89
CPSF1-203ENST00000527916 FBXL2Q9UKC9 423 aa9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms