RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 PRRC2AP48634 2157 aaKnown RBP3.43□□□□□ -1.86
CD44-223ENST00000526553 WDR97A6NE52 1622 aa3.43□□□□□ -1.86
CD44-223ENST00000526553 CCDC7Q96M83 1385 aa3.42□□□□□ -1.86
CD44-223ENST00000526553 LRIT2A6NDA9 550 aa3.42□□□□□ -1.86
CD44-223ENST00000526553 ZSCAN5CA6NGD5 496 aaPredicted RBP3.42□□□□□ -1.86
CD44-223ENST00000526553 PDLIM1O00151 329 aa3.42□□□□□ -1.86
CD44-223ENST00000526553 HMMRO75330 724 aa3.42□□□□□ -1.86
CD44-223ENST00000526553 RHBDL1O75783 438 aa3.42□□□□□ -1.86
CD44-223ENST00000526553 TOXO94900 526 aa3.42□□□□□ -1.86
CD44-223ENST00000526553 CHRNA1P02708 482 aa3.42□□□□□ -1.86
CD44-223ENST00000526553 CYP11B1P15538 503 aa3.42□□□□□ -1.86
CD44-223ENST00000526553 RPS2P15880 293 aaKnown RBP3.42□□□□□ -1.86
CD44-223ENST00000526553 DRD5P21918 477 aa3.42□□□□□ -1.86
CD44-223ENST00000526553 GLRA2P23416 452 aa3.42□□□□□ -1.86
CD44-223ENST00000526553 IST1P53990 364 aa3.42□□□□□ -1.86
CD44-223ENST00000526553 HMGCS2P54868 508 aa3.42□□□□□ -1.86
CD44-223ENST00000526553 ACTR1AP61163 376 aa3.42□□□□□ -1.86
CD44-223ENST00000526553 OSTNP61366 133 aa3.42□□□□□ -1.86
CD44-223ENST00000526553 LYZP61626 148 aa3.42□□□□□ -1.86
CD44-223ENST00000526553 GPM6BQ13491 265 aa3.42□□□□□ -1.86
CD44-223ENST00000526553 PDK4Q16654 411 aa3.42□□□□□ -1.86
CD44-223ENST00000526553 CDKN3Q16667 212 aa3.42□□□□□ -1.86
CD44-223ENST00000526553 CCDC57Q2TAC2 916 aa3.42□□□□□ -1.86
CD44-223ENST00000526553 C14orf28Q4W4Y0 310 aa3.42□□□□□ -1.86
CD44-223ENST00000526553 CEP55Q53EZ4 464 aa3.42□□□□□ -1.86
CD44-223ENST00000526553 CES3Q6UWW8 571 aa3.42□□□□□ -1.86
CD44-223ENST00000526553 ZNF562Q6V9R5 426 aa3.42□□□□□ -1.86
CD44-223ENST00000526553 MOB2Q70IA6 237 aa3.42□□□□□ -1.86
CD44-223ENST00000526553 ERASQ7Z444 233 aa3.42□□□□□ -1.86
CD44-223ENST00000526553 VASH2Q86V25 355 aa3.42□□□□□ -1.86
CD44-223ENST00000526553 EFCAB13Q8IY85 973 aa3.42□□□□□ -1.86
CD44-223ENST00000526553 SLC22A18ASQ8N1D0 253 aa3.42□□□□□ -1.86
CD44-223ENST00000526553 ARL14Q8N4G2 192 aa3.42□□□□□ -1.86
CD44-223ENST00000526553 RELL2Q8NC24 303 aaPredicted RBP3.42□□□□□ -1.86
CD44-223ENST00000526553 STEAP2Q8NFT2 490 aa3.42□□□□□ -1.86
CD44-223ENST00000526553 OR5AU1Q8NGC0 362 aa3.42□□□□□ -1.86
CD44-223ENST00000526553 OR52M1Q8NGK5 317 aa3.42□□□□□ -1.86
CD44-223ENST00000526553 DLX4Q92988 240 aaPredicted RBP3.42□□□□□ -1.86
CD44-223ENST00000526553 PPP1R16AQ96I34 528 aa3.42□□□□□ -1.86
CD44-223ENST00000526553 ZNF414Q96IQ9 312 aa3.42□□□□□ -1.86
CD44-223ENST00000526553 TTYH2Q9BSA4 534 aa3.42□□□□□ -1.86
CD44-223ENST00000526553 GPR174Q9BXC1 333 aa3.42□□□□□ -1.86
CD44-223ENST00000526553 TMEM117Q9H0C3 514 aa3.42□□□□□ -1.86
CD44-223ENST00000526553 ELL3Q9HB65 397 aaPredicted RBP3.42□□□□□ -1.86
CD44-223ENST00000526553 NRN1Q9NPD7 142 aa3.42□□□□□ -1.86
CD44-223ENST00000526553 AGPAT5Q9NUQ2 364 aa3.42□□□□□ -1.86
CD44-223ENST00000526553 RDH8Q9NYR8 311 aa3.42□□□□□ -1.86
CD44-223ENST00000526553 MBD2Q9UBB5 411 aa3.42□□□□□ -1.86
CD44-223ENST00000526553 GHRLQ9UBU3 117 aa3.42□□□□□ -1.86
CD44-223ENST00000526553 MLXQ9UH92 298 aa3.42□□□□□ -1.86
CD44-223ENST00000526553 RNF24Q9Y225 148 aa3.42□□□□□ -1.86
CD44-223ENST00000526553 EIF3LQ9Y262 564 aaKnown RBP3.42□□□□□ -1.86
CD44-223ENST00000526553 AP4B1Q9Y6B7 739 aa3.42□□□□□ -1.86
CD44-223ENST00000526553 CEP170Q5SW79 1584 aa3.42□□□□□ -1.86
CD44-223ENST00000526553 ATRXP46100 2492 aa3.42□□□□□ -1.86
CD44-223ENST00000526553 KDRP35968 1356 aa3.41□□□□□ -1.86
CD44-223ENST00000526553 C15orf38-AP3S2A0A0A6YYH1 394 aa3.41□□□□□ -1.86
CD44-223ENST00000526553 A0A0J9YVX5 310 aa3.41□□□□□ -1.86
CD44-223ENST00000526553 GSAPA4D1B5 854 aa3.41□□□□□ -1.86
CD44-223ENST00000526553 RIPK2O43353 540 aa3.41□□□□□ -1.86
CD44-223ENST00000526553 JAK2O60674 1132 aa3.41□□□□□ -1.86
CD44-223ENST00000526553 GOT2P00505 430 aaKnown RBP3.41□□□□□ -1.86
CD44-223ENST00000526553 GIG44P09565 113 aaPredicted RBP3.41□□□□□ -1.86
CD44-223ENST00000526553 CLUP10909 449 aa3.41□□□□□ -1.86
CD44-223ENST00000526553 HSD17B1P14061 328 aa3.41□□□□□ -1.86
CD44-223ENST00000526553 TSPAN8P19075 237 aa3.41□□□□□ -1.86
CD44-223ENST00000526553 CHI3L1P36222 383 aaPredicted RBP3.41□□□□□ -1.86
CD44-223ENST00000526553 SLC7A2P52569 658 aa3.41□□□□□ -1.86
CD44-223ENST00000526553 LRRC74AQ0VAA2 488 aa3.41□□□□□ -1.86
CD44-223ENST00000526553 ZKSCAN8Q15776 578 aaPredicted RBP3.41□□□□□ -1.86
CD44-223ENST00000526553 UNC50Q53HI1 259 aa3.41□□□□□ -1.86
CD44-223ENST00000526553 BEND6Q5SZJ8 279 aaPredicted RBP3.41□□□□□ -1.86
CD44-223ENST00000526553 TAF3Q5VWG9 929 aa3.41□□□□□ -1.86
CD44-223ENST00000526553 ASPHD2Q6ICH7 369 aa3.41□□□□□ -1.86
CD44-223ENST00000526553 TMEM184AQ6ZMB5 413 aa3.41□□□□□ -1.86
CD44-223ENST00000526553 STOX1Q6ZVD7 989 aa3.41□□□□□ -1.86
CD44-223ENST00000526553 UNC5CLQ8IV45 518 aa3.41□□□□□ -1.86
CD44-223ENST00000526553 NAXDQ8IW45 347 aa3.41□□□□□ -1.86
CD44-223ENST00000526553 TBCKQ8TEA7 893 aa3.41□□□□□ -1.86
CD44-223ENST00000526553 GTSF1Q8WW33 167 aa3.41□□□□□ -1.86
CD44-223ENST00000526553 CYYR1Q96J86 154 aa3.41□□□□□ -1.86
CD44-223ENST00000526553 SENP8Q96LD8 212 aa3.41□□□□□ -1.86
CD44-223ENST00000526553 FEM1AQ9BSK4 669 aa3.41□□□□□ -1.86
CD44-223ENST00000526553 APOOQ9BUR5 198 aa3.41□□□□□ -1.86
CD44-223ENST00000526553 ALG12Q9BV10 488 aa3.41□□□□□ -1.86
CD44-223ENST00000526553 ST6GALNAC5Q9BVH7 336 aa3.41□□□□□ -1.86
CD44-223ENST00000526553 SEC14L4Q9UDX3 406 aa3.41□□□□□ -1.86
CD44-223ENST00000526553 RSPH14Q9UHP6 348 aa3.41□□□□□ -1.86
CD44-223ENST00000526553 CELA1Q9UNI1 258 aa3.41□□□□□ -1.86
CD44-223ENST00000526553 CUX1P39880 1505 aa3.4□□□□□ -1.86
CD44-223ENST00000526553 PPIAL4CA0A0B4J2A2 164 aa3.4□□□□□ -1.87
CD44-223ENST00000526553 A0A1W2PNU3 283 aaPredicted RBP3.4□□□□□ -1.87
CD44-223ENST00000526553 MBLAC1A4D2B0 266 aaPredicted RBP3.4□□□□□ -1.87
CD44-223ENST00000526553 TRIM64CA6NLI5 447 aa3.4□□□□□ -1.87
CD44-223ENST00000526553 PPIAL4DF5H284 164 aa3.4□□□□□ -1.87
CD44-223ENST00000526553 H0YL77 283 aa3.4□□□□□ -1.87
CD44-223ENST00000526553 SDHDO14521 159 aa3.4□□□□□ -1.87
CD44-223ENST00000526553 XPO1O14980 1071 aaKnown RBP3.4□□□□□ -1.87
CD44-223ENST00000526553 KIAA0754O94854 1291 aa3.4□□□□□ -1.87
CD44-223ENST00000526553 PRAMEF12O95522 483 aa3.4□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms