RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 GDPD3Q7L5L3 318 aa3.4□□□□□ -1.87
USP53-205ENST00000509769 KIAA0907Q7Z7F0 614 aaPredicted RBP3.4□□□□□ -1.87
USP53-205ENST00000509769 FJX1Q86VR8 437 aa3.4□□□□□ -1.87
USP53-205ENST00000509769 ANKRD46Q86W74 232 aa3.4□□□□□ -1.87
USP53-205ENST00000509769 NUDT13Q86X67 352 aa3.4□□□□□ -1.87
USP53-205ENST00000509769 TGIF2LXQ8IUE1 241 aa3.4□□□□□ -1.87
USP53-205ENST00000509769 DND1Q8IYX4 353 aaKnown RBP3.4□□□□□ -1.87
USP53-205ENST00000509769 CISD2Q8N5K1 135 aaKnown RBP3.4□□□□□ -1.87
USP53-205ENST00000509769 POC1AQ8NBT0 407 aa3.4□□□□□ -1.87
USP53-205ENST00000509769 CD200R1Q8TD46 325 aa3.4□□□□□ -1.87
USP53-205ENST00000509769 CA5BP1Q8WTZ4 195 aa3.4□□□□□ -1.87
USP53-205ENST00000509769 SLC5A11Q8WWX8 675 aa3.4□□□□□ -1.87
USP53-205ENST00000509769 CPA5Q8WXQ8 436 aa3.4□□□□□ -1.87
USP53-205ENST00000509769 MCHR2Q969V1 340 aa3.4□□□□□ -1.87
USP53-205ENST00000509769 BORCS6Q96GS4 357 aa3.4□□□□□ -1.87
USP53-205ENST00000509769 GMPPAQ96IJ6 420 aaPredicted RBP3.4□□□□□ -1.87
USP53-205ENST00000509769 BMFQ96LC9 184 aa3.4□□□□□ -1.87
USP53-205ENST00000509769 SLC22A12Q96S37 553 aa3.4□□□□□ -1.87
USP53-205ENST00000509769 SLC38A3Q99624 504 aa3.4□□□□□ -1.87
USP53-205ENST00000509769 KCNJ15Q99712 375 aa3.4□□□□□ -1.87
USP53-205ENST00000509769 TMEM191AQ9H0A3 160 aa3.4□□□□□ -1.87
USP53-205ENST00000509769 RAB18Q9NP72 206 aa3.4□□□□□ -1.87
USP53-205ENST00000509769 ACSS1Q9NUB1 689 aaPredicted RBP3.4□□□□□ -1.87
USP53-205ENST00000509769 MED17Q9NVC6 651 aa3.4□□□□□ -1.87
USP53-205ENST00000509769 RASL12Q9NYN1 266 aa3.4□□□□□ -1.87
USP53-205ENST00000509769 TAS2R14Q9NYV8 317 aa3.4□□□□□ -1.87
USP53-205ENST00000509769 CDC42EP3Q9UKI2 254 aa3.4□□□□□ -1.87
USP53-205ENST00000509769 VWA7Q9Y334 891 aa3.4□□□□□ -1.87
USP53-205ENST00000509769 TMED3Q9Y3Q3 217 aa3.4□□□□□ -1.87
USP53-205ENST00000509769 NID2Q14112 1375 aa3.39□□□□□ -1.87
USP53-205ENST00000509769 TCRBV9S1A1TA0A576 114 aa3.39□□□□□ -1.87
USP53-205ENST00000509769 TMEM82A0PJX8 343 aa3.39□□□□□ -1.87
USP53-205ENST00000509769 LINC00862A6NCI5 91 aa3.39□□□□□ -1.87
USP53-205ENST00000509769 USP17L13C9JLJ4 530 aa3.39□□□□□ -1.87
USP53-205ENST00000509769 PRKAB2O43741 272 aa3.39□□□□□ -1.87
USP53-205ENST00000509769 SPDEFO95238 335 aa3.39□□□□□ -1.87
USP53-205ENST00000509769 NDUFB10O96000 172 aa3.39□□□□□ -1.87
USP53-205ENST00000509769 KNG1P01042 644 aa3.39□□□□□ -1.87
USP53-205ENST00000509769 SHBGP04278 402 aa3.39□□□□□ -1.87
USP53-205ENST00000509769 GNSP15586 552 aa3.39□□□□□ -1.87
USP53-205ENST00000509769 HSD11B1P28845 292 aa3.39□□□□□ -1.87
USP53-205ENST00000509769 AKT2P31751 481 aa3.39□□□□□ -1.87
USP53-205ENST00000509769 SHMT2P34897 504 aa3.39□□□□□ -1.87
USP53-205ENST00000509769 AVPR1AP37288 418 aa3.39□□□□□ -1.87
USP53-205ENST00000509769 BCL6P41182 706 aa3.39□□□□□ -1.87
USP53-205ENST00000509769 BUD31P41223 144 aaPredicted RBP3.39□□□□□ -1.87
USP53-205ENST00000509769 ZNF136P52737 540 aa3.39□□□□□ -1.87
USP53-205ENST00000509769 UBE2MP61081 183 aaKnown RBP3.39□□□□□ -1.87
USP53-205ENST00000509769 GBE1Q04446 702 aa3.39□□□□□ -1.87
USP53-205ENST00000509769 RAB40BQ12829 278 aa3.39□□□□□ -1.87
USP53-205ENST00000509769 ELAVL2Q12926 359 aaKnown RBP3.39□□□□□ -1.87
USP53-205ENST00000509769 SEMA3BQ13214 749 aa3.39□□□□□ -1.87
USP53-205ENST00000509769 MEP1AQ16819 746 aa3.39□□□□□ -1.87
USP53-205ENST00000509769 TATDN3Q17R31 274 aa3.39□□□□□ -1.87
USP53-205ENST00000509769 FAM74A3Q4VXF1 159 aa3.39□□□□□ -1.87
USP53-205ENST00000509769 CRB2Q5IJ48 1285 aa3.39□□□□□ -1.87
USP53-205ENST00000509769 CAPN13Q6MZZ7 669 aaPredicted RBP3.39□□□□□ -1.87
USP53-205ENST00000509769 C5orf46Q6UWT4 87 aa3.39□□□□□ -1.87
USP53-205ENST00000509769 GK5Q6ZS86 529 aa3.39□□□□□ -1.87
USP53-205ENST00000509769 TMEM150AQ86TG1 271 aa3.39□□□□□ -1.87
USP53-205ENST00000509769 CLEC10AQ8IUN9 316 aa3.39□□□□□ -1.87
USP53-205ENST00000509769 HS6ST3Q8IZP7 471 aa3.39□□□□□ -1.87
USP53-205ENST00000509769 ACBD7Q8N6N7 88 aa3.39□□□□□ -1.87
USP53-205ENST00000509769 PRELID2Q8N945 189 aa3.39□□□□□ -1.87
USP53-205ENST00000509769 UBAC2Q8NBM4 344 aa3.39□□□□□ -1.87
USP53-205ENST00000509769 OR56A1Q8NGH5 318 aa3.39□□□□□ -1.87
USP53-205ENST00000509769 GPR119Q8TDV5 335 aa3.39□□□□□ -1.87
USP53-205ENST00000509769 CANT1Q8WVQ1 401 aa3.39□□□□□ -1.87
USP53-205ENST00000509769 PABPC5Q96DU9 382 aaKnown RBP3.39□□□□□ -1.87
USP53-205ENST00000509769 ADGRG7Q96K78 797 aa3.39□□□□□ -1.87
USP53-205ENST00000509769 LRR1Q96L50 414 aa3.39□□□□□ -1.87
USP53-205ENST00000509769 PKP2Q99959 881 aa3.39□□□□□ -1.87
USP53-205ENST00000509769 MXRA8Q9BRK3 442 aa3.39□□□□□ -1.87
USP53-205ENST00000509769 THAP7Q9BT49 309 aaPredicted RBP3.39□□□□□ -1.87
USP53-205ENST00000509769 DOHHQ9BU89 302 aa3.39□□□□□ -1.87
USP53-205ENST00000509769 MUC3BQ9H195 1237 aa3.39□□□□□ -1.87
USP53-205ENST00000509769 CDT1Q9H211 546 aa3.39□□□□□ -1.87
USP53-205ENST00000509769 OR51I2Q9H344 312 aa3.39□□□□□ -1.87
USP53-205ENST00000509769 HRH4Q9H3N8 390 aa3.39□□□□□ -1.87
USP53-205ENST00000509769 MEAF6Q9HAF1 191 aa3.39□□□□□ -1.87
USP53-205ENST00000509769 ACKR4Q9NPB9 350 aa3.39□□□□□ -1.87
USP53-205ENST00000509769 PIH1D1Q9NWS0 290 aaKnown RBP3.39□□□□□ -1.87
USP53-205ENST00000509769 P4HTMQ9NXG6 502 aa3.39□□□□□ -1.87
USP53-205ENST00000509769 PPM1HQ9ULR3 514 aa3.39□□□□□ -1.87
USP53-205ENST00000509769 MRPS23Q9Y3D9 190 aaKnown RBP3.39□□□□□ -1.87
USP53-205ENST00000509769 BRCA1P38398 1863 aaKnown RBP3.39□□□□□ -1.87
USP53-205ENST00000509769 COL15A1P39059 1388 aa3.39□□□□□ -1.87
USP53-205ENST00000509769 MTMR11A4FU01 709 aa3.39□□□□□ -1.87
USP53-205ENST00000509769 AGPSO00116 658 aa3.39□□□□□ -1.87
USP53-205ENST00000509769 GTPBP1O00178 669 aaKnown RBP3.39□□□□□ -1.87
USP53-205ENST00000509769 PDHXO00330 501 aa3.39□□□□□ -1.87
USP53-205ENST00000509769 SLC16A4O15374 487 aa3.39□□□□□ -1.87
USP53-205ENST00000509769 ERAL1O75616 437 aaKnown RBP3.39□□□□□ -1.87
USP53-205ENST00000509769 VAMP5O95183 116 aa3.39□□□□□ -1.87
USP53-205ENST00000509769 PLGP00747 810 aaPredicted RBP3.39□□□□□ -1.87
USP53-205ENST00000509769 CSTAP01040 98 aa3.39□□□□□ -1.87
USP53-205ENST00000509769 PMP2P02689 132 aa3.39□□□□□ -1.87
USP53-205ENST00000509769 CREB1P16220 341 aa3.39□□□□□ -1.87
USP53-205ENST00000509769 AMY2BP19961 511 aa3.39□□□□□ -1.87
USP53-205ENST00000509769 PSMB1P20618 241 aaKnown RBP3.39□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms