RNA–Protein interactions for RNA: ENST00000504761.6

TCOF1-207, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 4,467 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-207ENST00000504761 ASIC5Q9NY37 505 aa13.2□□□□□ -0.3
TCOF1-207ENST00000504761 DICER1Q9UPY3 1922 aaKnown RBP13.19□□□□□ -0.3
TCOF1-207ENST00000504761 RP1P56715 2156 aa13.19□□□□□ -0.3
TCOF1-207ENST00000504761 PPP1R3DO95685 299 aa13.19□□□□□ -0.3
TCOF1-207ENST00000504761 HLA-DPB1P04440 258 aa13.19□□□□□ -0.3
TCOF1-207ENST00000504761 IL9P15248 144 aa13.19□□□□□ -0.3
TCOF1-207ENST00000504761 LIM2P55344 173 aa13.19□□□□□ -0.3
TCOF1-207ENST00000504761 RPS15P62841 145 aaKnown RBP13.19□□□□□ -0.3
TCOF1-207ENST00000504761 SMAD2Q15796 467 aaKnown RBP13.19□□□□□ -0.3
TCOF1-207ENST00000504761 C14orf28Q4W4Y0 310 aa13.19□□□□□ -0.3
TCOF1-207ENST00000504761 CARD17Q5XLA6 110 aa13.19□□□□□ -0.3
TCOF1-207ENST00000504761 TMCO6Q96DC7 493 aa13.19□□□□□ -0.3
TCOF1-207ENST00000504761 LGALS12Q96DT0 336 aa13.19□□□□□ -0.3
TCOF1-207ENST00000504761 ZNF559Q9BR84 538 aa13.19□□□□□ -0.3
TCOF1-207ENST00000504761 NFKBIL1Q9UBC1 381 aaPredicted RBP13.19□□□□□ -0.3
TCOF1-207ENST00000504761 DAPP1Q9UN19 280 aa13.19□□□□□ -0.3
TCOF1-207ENST00000504761 RPH3AQ9Y2J0 694 aaPredicted RBP13.19□□□□□ -0.3
TCOF1-207ENST00000504761 CASC3O15234 703 aaKnown RBP13.19□□□□□ -0.3
TCOF1-207ENST00000504761 SCRG1O75711 98 aa13.19□□□□□ -0.3
TCOF1-207ENST00000504761 DCKP27707 260 aa13.19□□□□□ -0.3
TCOF1-207ENST00000504761 RAB38P57729 211 aa13.19□□□□□ -0.3
TCOF1-207ENST00000504761 PHC1P78364 1004 aa13.19□□□□□ -0.3
TCOF1-207ENST00000504761 RAET1LQ5VY80 246 aa13.19□□□□□ -0.3
TCOF1-207ENST00000504761 KLBQ86Z14 1044 aa13.19□□□□□ -0.3
TCOF1-207ENST00000504761 PRRC1Q96M27 445 aa13.19□□□□□ -0.3
TCOF1-207ENST00000504761 HS6ST2Q96MM7 605 aa13.19□□□□□ -0.3
TCOF1-207ENST00000504761 TTYH2Q9BSA4 534 aa13.19□□□□□ -0.3
TCOF1-207ENST00000504761 PISDQ9UG56 409 aa13.19□□□□□ -0.3
TCOF1-207ENST00000504761 SPATA2Q9UM82 520 aa13.19□□□□□ -0.3
TCOF1-207ENST00000504761 CARD8Q9Y2G2 431 aa13.19□□□□□ -0.3
TCOF1-207ENST00000504761 CXorf51AA0A1B0GTR3 108 aa13.19□□□□□ -0.3
TCOF1-207ENST00000504761 TLCD2A6NGC4 264 aa13.19□□□□□ -0.3
TCOF1-207ENST00000504761 GYPBP06028 91 aa13.19□□□□□ -0.3
TCOF1-207ENST00000504761 SPARCP09486 303 aa13.19□□□□□ -0.3
TCOF1-207ENST00000504761 DAPP51397 102 aa13.19□□□□□ -0.3
TCOF1-207ENST00000504761 ELOAQ14241 798 aaKnown RBP13.19□□□□□ -0.3
TCOF1-207ENST00000504761 PROX2Q3B8N5 592 aa13.19□□□□□ -0.3
TCOF1-207ENST00000504761 LRIF1Q5T3J3 769 aa13.19□□□□□ -0.3
TCOF1-207ENST00000504761 OR6T1Q8NGN1 323 aa13.19□□□□□ -0.3
TCOF1-207ENST00000504761 UBE2FQ969M7 185 aa13.19□□□□□ -0.3
TCOF1-207ENST00000504761 RBP7Q96R05 134 aa13.19□□□□□ -0.3
TCOF1-207ENST00000504761 WSB2Q9NYS7 404 aaPredicted RBP13.19□□□□□ -0.3
TCOF1-207ENST00000504761 LAMP5Q9UJQ1 280 aa13.19□□□□□ -0.3
TCOF1-207ENST00000504761 SRPK3Q9UPE1 567 aa13.19□□□□□ -0.3
TCOF1-207ENST00000504761 SEC14L5O43304 696 aa13.19□□□□□ -0.3
TCOF1-207ENST00000504761 TRIM3O75382 744 aaPredicted RBP13.19□□□□□ -0.3
TCOF1-207ENST00000504761 GASTP01350 101 aa13.19□□□□□ -0.3
TCOF1-207ENST00000504761 TACSTD2P09758 323 aa13.19□□□□□ -0.3
TCOF1-207ENST00000504761 ARFIP1P53367 373 aa13.19□□□□□ -0.3
TCOF1-207ENST00000504761 CTXN1P60606 82 aa13.19□□□□□ -0.3
TCOF1-207ENST00000504761 MSLNLQ96KJ4 702 aa13.19□□□□□ -0.3
TCOF1-207ENST00000504761 CMKLR1Q99788 373 aa13.19□□□□□ -0.3
TCOF1-207ENST00000504761 HDHD5Q9BXW7 423 aa13.19□□□□□ -0.3
TCOF1-207ENST00000504761 CBLCQ9ULV8 474 aa13.19□□□□□ -0.3
TCOF1-207ENST00000504761 TRAV27A0A087WT01 109 aa13.18□□□□□ -0.3
TCOF1-207ENST00000504761 SPTY2D1-AS1A0A0U1RR47 76 aa13.18□□□□□ -0.3
TCOF1-207ENST00000504761 A0A1W2PRG6 482 aa13.18□□□□□ -0.3
TCOF1-207ENST00000504761 CLCA1A8K7I4 914 aa13.18□□□□□ -0.3
TCOF1-207ENST00000504761 PPM1BO75688 479 aa13.18□□□□□ -0.3
TCOF1-207ENST00000504761 HOXB3P14651 431 aaPredicted RBP13.18□□□□□ -0.3
TCOF1-207ENST00000504761 SFTPDP35247 375 aa13.18□□□□□ -0.3
TCOF1-207ENST00000504761 PDX1P52945 283 aa13.18□□□□□ -0.3
TCOF1-207ENST00000504761 MAD2L1BPQ15013 274 aaPredicted RBP13.18□□□□□ -0.3
TCOF1-207ENST00000504761 C1orf94Q6P1W5 598 aa13.18□□□□□ -0.3
TCOF1-207ENST00000504761 B3GLCTQ6Y288 498 aa13.18□□□□□ -0.3
TCOF1-207ENST00000504761 ABHD11Q8NFV4 315 aa13.18□□□□□ -0.3
TCOF1-207ENST00000504761 KIAA1143Q96AT1 154 aaPredicted RBP13.18□□□□□ -0.3
TCOF1-207ENST00000504761 NEK6Q9HC98 313 aa13.18□□□□□ -0.3
TCOF1-207ENST00000504761 SNPHO15079 494 aa13.18□□□□□ -0.3
TCOF1-207ENST00000504761 MT-ND5P03915 603 aa13.18□□□□□ -0.3
TCOF1-207ENST00000504761 BSGP35613 385 aa13.18□□□□□ -0.3
TCOF1-207ENST00000504761 TUBA3CQ13748 450 aa13.18□□□□□ -0.3
TCOF1-207ENST00000504761 ZNF404Q494X3 552 aa13.18□□□□□ -0.3
TCOF1-207ENST00000504761 DTX3Q8N9I9 347 aa13.18□□□□□ -0.3
TCOF1-207ENST00000504761 LINC01555Q8NAE3 123 aa13.18□□□□□ -0.3
TCOF1-207ENST00000504761 NSMAFQ92636 917 aa13.18□□□□□ -0.3
TCOF1-207ENST00000504761 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP13.18□□□□□ -0.3
TCOF1-207ENST00000504761 TMEM138Q9NPI0 162 aa13.18□□□□□ -0.3
TCOF1-207ENST00000504761 TAS2R7Q9NYW3 318 aa13.18□□□□□ -0.3
TCOF1-207ENST00000504761 NDUFAF4Q9P032 175 aa13.18□□□□□ -0.3
TCOF1-207ENST00000504761 ZNF443Q9Y2A4 671 aaPredicted RBP13.18□□□□□ -0.3
TCOF1-207ENST00000504761 PCDHGB1Q9Y5G3 927 aa13.18□□□□□ -0.3
TCOF1-207ENST00000504761 IGHV3-20A0A0C4DH32 117 aa13.18□□□□□ -0.3
TCOF1-207ENST00000504761 PRKAR1AP10644 381 aa13.18□□□□□ -0.3
TCOF1-207ENST00000504761 FUT1P19526 365 aa13.18□□□□□ -0.3
TCOF1-207ENST00000504761 SYT13Q7L8C5 426 aa13.18□□□□□ -0.3
TCOF1-207ENST00000504761 KLHDC8BQ8IXV7 354 aa13.18□□□□□ -0.3
TCOF1-207ENST00000504761 SPEM1Q8N4L4 309 aa13.18□□□□□ -0.3
TCOF1-207ENST00000504761 ACBD7Q8N6N7 88 aa13.18□□□□□ -0.3
TCOF1-207ENST00000504761 METTL25Q8N6Q8 603 aa13.18□□□□□ -0.3
TCOF1-207ENST00000504761 CHDHQ8NE62 594 aaPredicted RBP13.18□□□□□ -0.3
TCOF1-207ENST00000504761 ANKK1Q8NFD2 765 aa13.18□□□□□ -0.3
TCOF1-207ENST00000504761 SFXN5Q8TD22 340 aa13.18□□□□□ -0.3
TCOF1-207ENST00000504761 BMFQ96LC9 184 aa13.18□□□□□ -0.3
TCOF1-207ENST00000504761 TRPV5Q9NQA5 729 aa13.18□□□□□ -0.3
TCOF1-207ENST00000504761 DOCK6Q96HP0 2047 aa13.18□□□□□ -0.3
TCOF1-207ENST00000504761 ZNF670-ZNF695F2Z2N8 137 aa13.17□□□□□ -0.3
TCOF1-207ENST00000504761 ENTPD6O75354 484 aa13.17□□□□□ -0.3
TCOF1-207ENST00000504761 STT3AP46977 705 aa13.17□□□□□ -0.3
TCOF1-207ENST00000504761 PSMD7P51665 324 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 58.8 ms