RNA–Protein interactions for RNA: ENST00000494612.1

SMC4-224, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 3

Gene SMC4, Length 622 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-224ENST00000494612 DNAJB1P25685 340 aa3.42□□□□□ -1.86
SMC4-224ENST00000494612 PTPN6P29350 595 aa3.42□□□□□ -1.86
SMC4-224ENST00000494612 MRPS6P82932 125 aaKnown RBP3.42□□□□□ -1.86
SMC4-224ENST00000494612 EXOSC2Q13868 293 aaKnown RBP3.42□□□□□ -1.86
SMC4-224ENST00000494612 SMC1AQ14683 1233 aaKnown RBP3.42□□□□□ -1.86
SMC4-224ENST00000494612 RAB35Q15286 201 aa3.42□□□□□ -1.86
SMC4-224ENST00000494612 ZIC1Q15915 447 aa3.42□□□□□ -1.86
SMC4-224ENST00000494612 ZSWIM7Q19AV6 140 aa3.42□□□□□ -1.86
SMC4-224ENST00000494612 ACSF3Q4G176 576 aaPredicted RBP3.42□□□□□ -1.86
SMC4-224ENST00000494612 DMKNQ6E0U4 476 aaPredicted RBP3.42□□□□□ -1.86
SMC4-224ENST00000494612 LPCAT2Q7L5N7 544 aa3.42□□□□□ -1.86
SMC4-224ENST00000494612 P2RY8Q86VZ1 359 aa3.42□□□□□ -1.86
SMC4-224ENST00000494612 CDC20BQ86Y33 519 aa3.42□□□□□ -1.86
SMC4-224ENST00000494612 UNC5CLQ8IV45 518 aa3.42□□□□□ -1.86
SMC4-224ENST00000494612 FAM71CQ8NEG0 241 aa3.42□□□□□ -1.86
SMC4-224ENST00000494612 DQX1Q8TE96 717 aaKnown RBP3.42□□□□□ -1.86
SMC4-224ENST00000494612 NCLNQ969V3 563 aa3.42□□□□□ -1.86
SMC4-224ENST00000494612 RANBP9Q96S59 729 aa3.42□□□□□ -1.86
SMC4-224ENST00000494612 KCNK16Q96T55 309 aa3.42□□□□□ -1.86
SMC4-224ENST00000494612 C19orf43Q9BQ61 176 aa3.42□□□□□ -1.86
SMC4-224ENST00000494612 APOL2Q9BQE5 337 aa3.42□□□□□ -1.86
SMC4-224ENST00000494612 TRIM9Q9C026 710 aa3.42□□□□□ -1.86
SMC4-224ENST00000494612 VAT1LQ9HCJ6 419 aa3.42□□□□□ -1.86
SMC4-224ENST00000494612 AMBNQ9NP70 447 aa3.42□□□□□ -1.86
SMC4-224ENST00000494612 C1orf123Q9NWV4 160 aa3.42□□□□□ -1.86
SMC4-224ENST00000494612 RAI14Q9P0K7 980 aa3.42□□□□□ -1.86
SMC4-224ENST00000494612 ZNF581Q9P0T4 197 aa3.42□□□□□ -1.86
SMC4-224ENST00000494612 CIDEBQ9UHD4 219 aa3.42□□□□□ -1.86
SMC4-224ENST00000494612 ZNF490Q9ULM2 529 aaPredicted RBP3.42□□□□□ -1.86
SMC4-224ENST00000494612 RNF115Q9Y4L5 304 aa3.42□□□□□ -1.86
SMC4-224ENST00000494612 COL5A2P05997 1499 aaPredicted RBP3.41□□□□□ -1.86
SMC4-224ENST00000494612 MYOM2P54296 1465 aa3.41□□□□□ -1.86
SMC4-224ENST00000494612 NRXN3Q9Y4C0 1643 aa3.41□□□□□ -1.86
SMC4-224ENST00000494612 E9PCH4 1651 aa3.41□□□□□ -1.86
SMC4-224ENST00000494612 IGHV3OR16-12A0A075B7B8 117 aa3.41□□□□□ -1.86
SMC4-224ENST00000494612 PDLIM1O00151 329 aa3.41□□□□□ -1.86
SMC4-224ENST00000494612 TOM1L1O75674 476 aa3.41□□□□□ -1.86
SMC4-224ENST00000494612 KBTBD11O94819 623 aa3.41□□□□□ -1.86
SMC4-224ENST00000494612 APBB3O95704 486 aa3.41□□□□□ -1.86
SMC4-224ENST00000494612 SLC35G4P0C7Q5 338 aa3.41□□□□□ -1.86
SMC4-224ENST00000494612 SLC35E2P0CK97 266 aa3.41□□□□□ -1.86
SMC4-224ENST00000494612 UMPSP11172 480 aa3.41□□□□□ -1.86
SMC4-224ENST00000494612 CYP2F1P24903 491 aa3.41□□□□□ -1.86
SMC4-224ENST00000494612 NUCB2P80303 420 aa3.41□□□□□ -1.86
SMC4-224ENST00000494612 UBE2V2Q15819 145 aa3.41□□□□□ -1.86
SMC4-224ENST00000494612 C15orf32Q32M92 178 aa3.41□□□□□ -1.86
SMC4-224ENST00000494612 TIMM50Q3ZCQ8 353 aa3.41□□□□□ -1.86
SMC4-224ENST00000494612 SPINK14Q6IE38 97 aa3.41□□□□□ -1.86
SMC4-224ENST00000494612 CCBE1Q6UXH8 406 aaPredicted RBP3.41□□□□□ -1.86
SMC4-224ENST00000494612 ZNF562Q6V9R5 426 aa3.41□□□□□ -1.86
SMC4-224ENST00000494612 HACD2Q6Y1H2 254 aa3.41□□□□□ -1.86
SMC4-224ENST00000494612 SYVN1Q86TM6 617 aa3.41□□□□□ -1.86
SMC4-224ENST00000494612 MISPQ8IVT2 679 aa3.41□□□□□ -1.86
SMC4-224ENST00000494612 TBC1D31Q96DN5 1066 aa3.41□□□□□ -1.86
SMC4-224ENST00000494612 C14orf79Q96F83 325 aa3.41□□□□□ -1.86
SMC4-224ENST00000494612 FOXN4Q96NZ1 517 aa3.41□□□□□ -1.86
SMC4-224ENST00000494612 RPAP3Q9H6T3 665 aaPredicted RBP3.41□□□□□ -1.86
SMC4-224ENST00000494612 TRPV5Q9NQA5 729 aa3.41□□□□□ -1.86
SMC4-224ENST00000494612 CLEC5AQ9NY25 188 aa3.41□□□□□ -1.86
SMC4-224ENST00000494612 UTP6Q9NYH9 597 aaKnown RBP3.41□□□□□ -1.86
SMC4-224ENST00000494612 MBD2Q9UBB5 411 aa3.41□□□□□ -1.86
SMC4-224ENST00000494612 MGAT4BQ9UQ53 548 aa3.41□□□□□ -1.86
SMC4-224ENST00000494612 RGPD1P0DJD0 1748 aa3.41□□□□□ -1.86
SMC4-224ENST00000494612 IQGAP3Q86VI3 1631 aa3.41□□□□□ -1.86
SMC4-224ENST00000494612 METP08581 1390 aa3.4□□□□□ -1.86
SMC4-224ENST00000494612 LRPPRCP42704 1394 aaKnown RBP3.4□□□□□ -1.86
SMC4-224ENST00000494612 A0A0U1RQV5 110 aa3.4□□□□□ -1.87
SMC4-224ENST00000494612 FAM230AA0A1W2PPH8 454 aa3.4□□□□□ -1.87
SMC4-224ENST00000494612 TRIM49BA6NDI0 452 aa3.4□□□□□ -1.87
SMC4-224ENST00000494612 NPIPA2E9PIF3 369 aa3.4□□□□□ -1.87
SMC4-224ENST00000494612 PDXKO00764 312 aa3.4□□□□□ -1.87
SMC4-224ENST00000494612 LANCL1O43813 399 aa3.4□□□□□ -1.87
SMC4-224ENST00000494612 VPS26AO75436 327 aa3.4□□□□□ -1.87
SMC4-224ENST00000494612 PRAMEF12O95522 483 aa3.4□□□□□ -1.87
SMC4-224ENST00000494612 DIRAS3O95661 229 aa3.4□□□□□ -1.87
SMC4-224ENST00000494612 MBD3O95983 291 aa3.4□□□□□ -1.87
SMC4-224ENST00000494612 IFNB1P01574 187 aa3.4□□□□□ -1.87
SMC4-224ENST00000494612 IGFBP1P08833 259 aaPredicted RBP3.4□□□□□ -1.87
SMC4-224ENST00000494612 DLSTP36957 453 aa3.4□□□□□ -1.87
SMC4-224ENST00000494612 ARHGDIBP52566 201 aa3.4□□□□□ -1.87
SMC4-224ENST00000494612 ZP4Q12836 540 aa3.4□□□□□ -1.87
SMC4-224ENST00000494612 TFDP1Q14186 410 aa3.4□□□□□ -1.87
SMC4-224ENST00000494612 TRIP10Q15642 601 aa3.4□□□□□ -1.87
SMC4-224ENST00000494612 INAQ16352 499 aa3.4□□□□□ -1.87
SMC4-224ENST00000494612 BTNL3Q6UXE8 466 aa3.4□□□□□ -1.87
SMC4-224ENST00000494612 ZNF600Q6ZNG1 722 aa3.4□□□□□ -1.87
SMC4-224ENST00000494612 GET4Q7L5D6 327 aaPredicted RBP3.4□□□□□ -1.87
SMC4-224ENST00000494612 NET1Q7Z628 596 aaPredicted RBP3.4□□□□□ -1.87
SMC4-224ENST00000494612 CCDC36Q8IYA8 594 aa3.4□□□□□ -1.87
SMC4-224ENST00000494612 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP3.4□□□□□ -1.87
SMC4-224ENST00000494612 BCORP1Q8N888 145 aa3.4□□□□□ -1.87
SMC4-224ENST00000494612 GIPC3Q8TF64 312 aa3.4□□□□□ -1.87
SMC4-224ENST00000494612 C11orf24Q96F05 449 aaPredicted RBP3.4□□□□□ -1.87
SMC4-224ENST00000494612 ELMO2Q96JJ3 720 aa3.4□□□□□ -1.87
SMC4-224ENST00000494612 DPH5Q9H2P9 285 aa3.4□□□□□ -1.87
SMC4-224ENST00000494612 MEPEQ9NQ76 525 aaPredicted RBP3.4□□□□□ -1.87
SMC4-224ENST00000494612 SLC7A10Q9NS82 523 aa3.4□□□□□ -1.87
SMC4-224ENST00000494612 KLRF1Q9NZS2 232 aa3.4□□□□□ -1.87
SMC4-224ENST00000494612 ATXN10Q9UBB4 475 aa3.4□□□□□ -1.87
SMC4-224ENST00000494612 ABCD2Q9UBJ2 740 aa3.4□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms