RNA–Protein interactions for RNA: ENST00000490557.1

HMGB1P38-201, Transcript of high mobility group box 1 pseudogene 38, humanhuman

BASIC

Gene HMGB1P38, Length 577 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P38-201ENST00000490557 RALGAPA1Q6GYQ0 2036 aa3.68□□□□□ -1.82
HMGB1P38-201ENST00000490557 EIF4G1Q04637 1599 aaKnown RBP3.68□□□□□ -1.82
HMGB1P38-201ENST00000490557 MFSD2BA6NFX1 497 aa3.67□□□□□ -1.82
HMGB1P38-201ENST00000490557 NCF1BA6NI72 391 aaPredicted RBP3.67□□□□□ -1.82
HMGB1P38-201ENST00000490557 ZSCAN5BA6NJL1 495 aa3.67□□□□□ -1.82
HMGB1P38-201ENST00000490557 NCF1CA8MVU1 366 aaPredicted RBP3.67□□□□□ -1.82
HMGB1P38-201ENST00000490557 HAT1O14929 419 aa3.67□□□□□ -1.82
HMGB1P38-201ENST00000490557 SLITRK3O94933 977 aa3.67□□□□□ -1.82
HMGB1P38-201ENST00000490557 ECDO95905 644 aaPredicted RBP3.67□□□□□ -1.82
HMGB1P38-201ENST00000490557 PAHP00439 452 aa3.67□□□□□ -1.82
HMGB1P38-201ENST00000490557 PGK2P07205 417 aa3.67□□□□□ -1.82
HMGB1P38-201ENST00000490557 CD9P21926 228 aa3.67□□□□□ -1.82
HMGB1P38-201ENST00000490557 CALB2P22676 271 aa3.67□□□□□ -1.82
HMGB1P38-201ENST00000490557 CYP2F1P24903 491 aa3.67□□□□□ -1.82
HMGB1P38-201ENST00000490557 SLC25A1P53007 311 aa3.67□□□□□ -1.82
HMGB1P38-201ENST00000490557 SNTB2Q13425 540 aaKnown RBP3.67□□□□□ -1.82
HMGB1P38-201ENST00000490557 IDI1Q13907 227 aa3.67□□□□□ -1.82
HMGB1P38-201ENST00000490557 WDR43Q15061 677 aaKnown RBP eCLIP3.67□□□□□ -1.82
HMGB1P38-201ENST00000490557 RCN1Q15293 331 aa3.67□□□□□ -1.82
HMGB1P38-201ENST00000490557 SYCP1Q15431 976 aa3.67□□□□□ -1.82
HMGB1P38-201ENST00000490557 HADHQ16836 314 aaKnown RBP3.67□□□□□ -1.82
HMGB1P38-201ENST00000490557 TPD52L1Q16890 204 aaPredicted RBP3.67□□□□□ -1.82
HMGB1P38-201ENST00000490557 USH1GQ495M9 461 aa3.67□□□□□ -1.82
HMGB1P38-201ENST00000490557 CCDC152Q4G0S7 254 aa3.67□□□□□ -1.82
HMGB1P38-201ENST00000490557 SULT1C3Q6IMI6 304 aa3.67□□□□□ -1.82
HMGB1P38-201ENST00000490557 DPY19L2P2Q6ZN68 376 aa3.67□□□□□ -1.82
HMGB1P38-201ENST00000490557 YRDCQ86U90 279 aaKnown RBP3.67□□□□□ -1.82
HMGB1P38-201ENST00000490557 CENPSQ8N2Z9 138 aa3.67□□□□□ -1.82
HMGB1P38-201ENST00000490557 PDCL2Q8N4E4 241 aa3.67□□□□□ -1.82
HMGB1P38-201ENST00000490557 LRRC17Q8N6Y2 441 aa3.67□□□□□ -1.82
HMGB1P38-201ENST00000490557 OR2T34Q8NGX1 318 aa3.67□□□□□ -1.82
HMGB1P38-201ENST00000490557 RFESDQ8TAC1 157 aa3.67□□□□□ -1.82
HMGB1P38-201ENST00000490557 MRAPQ8TCY5 172 aa3.67□□□□□ -1.82
HMGB1P38-201ENST00000490557 U2AF1L4Q8WU68 220 aaKnown RBP3.67□□□□□ -1.82
HMGB1P38-201ENST00000490557 SIGLEC12Q96PQ1 595 aa3.67□□□□□ -1.82
HMGB1P38-201ENST00000490557 OR5M11Q96RB7 305 aa3.67□□□□□ -1.82
HMGB1P38-201ENST00000490557 RANBP9Q96S59 729 aa3.67□□□□□ -1.82
HMGB1P38-201ENST00000490557 TBC1D10AQ9BXI6 508 aa3.67□□□□□ -1.82
HMGB1P38-201ENST00000490557 ATG10Q9H0Y0 220 aa3.67□□□□□ -1.82
HMGB1P38-201ENST00000490557 FAM124BQ9H5Z6 455 aaPredicted RBP3.67□□□□□ -1.82
HMGB1P38-201ENST00000490557 RAB20Q9NX57 234 aa3.67□□□□□ -1.82
HMGB1P38-201ENST00000490557 GDAP2Q9NXN4 497 aa3.67□□□□□ -1.82
HMGB1P38-201ENST00000490557 MROH5Q6ZUA9 1318 aa3.67□□□□□ -1.82
HMGB1P38-201ENST00000490557 GPAA1O43292 621 aa3.66□□□□□ -1.82
HMGB1P38-201ENST00000490557 LRP3O75074 770 aa3.66□□□□□ -1.82
HMGB1P38-201ENST00000490557 S100A9P06702 114 aaKnown RBP3.66□□□□□ -1.82
HMGB1P38-201ENST00000490557 FUT1P19526 365 aa3.66□□□□□ -1.82
HMGB1P38-201ENST00000490557 GDF1P27539 372 aa3.66□□□□□ -1.82
HMGB1P38-201ENST00000490557 PTPN4P29074 926 aa3.66□□□□□ -1.82
HMGB1P38-201ENST00000490557 CCR1P32246 355 aa3.66□□□□□ -1.82
HMGB1P38-201ENST00000490557 RDXP35241 583 aaKnown RBP3.66□□□□□ -1.82
HMGB1P38-201ENST00000490557 ARHGDIBP52566 201 aa3.66□□□□□ -1.82
HMGB1P38-201ENST00000490557 PRRX1P54821 245 aa3.66□□□□□ -1.82
HMGB1P38-201ENST00000490557 ATP5IP56385 69 aaPredicted RBP3.66□□□□□ -1.82
HMGB1P38-201ENST00000490557 TNFRSF17Q02223 184 aa3.66□□□□□ -1.82
HMGB1P38-201ENST00000490557 EIF2B1Q14232 305 aaKnown RBP3.66□□□□□ -1.82
HMGB1P38-201ENST00000490557 CD226Q15762 336 aa3.66□□□□□ -1.82
HMGB1P38-201ENST00000490557 CCDC57Q2TAC2 916 aa3.66□□□□□ -1.82
HMGB1P38-201ENST00000490557 SLC36A3Q495N2 470 aa3.66□□□□□ -1.82
HMGB1P38-201ENST00000490557 CFAP221Q4G0U5 840 aa3.66□□□□□ -1.82
HMGB1P38-201ENST00000490557 LDLRAP1Q5SW96 308 aa3.66□□□□□ -1.82
HMGB1P38-201ENST00000490557 FHL5Q5TD97 284 aa3.66□□□□□ -1.82
HMGB1P38-201ENST00000490557 AADACL4Q5VUY2 407 aa3.66□□□□□ -1.82
HMGB1P38-201ENST00000490557 PMF1Q6P1K2 205 aa3.66□□□□□ -1.82
HMGB1P38-201ENST00000490557 ATRAIDQ6UW56 229 aa3.66□□□□□ -1.82
HMGB1P38-201ENST00000490557 C2orf66Q6UXQ4 117 aa3.66□□□□□ -1.82
HMGB1P38-201ENST00000490557 ADAMTSL5Q6ZMM2 481 aa3.66□□□□□ -1.82
HMGB1P38-201ENST00000490557 GPBP1Q86WP2 473 aa3.66□□□□□ -1.82
HMGB1P38-201ENST00000490557 SLC22A9Q8IVM8 553 aa3.66□□□□□ -1.82
HMGB1P38-201ENST00000490557 C11orf53Q8IXP5 236 aa3.66□□□□□ -1.82
HMGB1P38-201ENST00000490557 TTC5Q8N0Z6 440 aa3.66□□□□□ -1.82
HMGB1P38-201ENST00000490557 OR56B1Q8NGI3 324 aa3.66□□□□□ -1.82
HMGB1P38-201ENST00000490557 OR10T2Q8NGX3 314 aa3.66□□□□□ -1.82
HMGB1P38-201ENST00000490557 AKR7LQ8NHP1 331 aa3.66□□□□□ -1.82
HMGB1P38-201ENST00000490557 TFB1MQ8WVM0 346 aaKnown RBP3.66□□□□□ -1.82
HMGB1P38-201ENST00000490557 P3H4Q92791 437 aa3.66□□□□□ -1.82
HMGB1P38-201ENST00000490557 FBXO32Q969P5 355 aa3.66□□□□□ -1.82
HMGB1P38-201ENST00000490557 PIWIL1Q96J94 861 aaKnown RBP3.66□□□□□ -1.82
HMGB1P38-201ENST00000490557 C9orf85Q96MD7 179 aa3.66□□□□□ -1.82
HMGB1P38-201ENST00000490557 COQ7Q99807 217 aa3.66□□□□□ -1.82
HMGB1P38-201ENST00000490557 CBWD1Q9BRT8 395 aa3.66□□□□□ -1.82
HMGB1P38-201ENST00000490557 FTHL17Q9BXU8 183 aa3.66□□□□□ -1.82
HMGB1P38-201ENST00000490557 CAPS2Q9BXY5 557 aa3.66□□□□□ -1.82
HMGB1P38-201ENST00000490557 VCX2Q9H322 139 aa3.66□□□□□ -1.82
HMGB1P38-201ENST00000490557 LHX3Q9UBR4 397 aa3.66□□□□□ -1.82
HMGB1P38-201ENST00000490557 MIOXQ9UGB7 285 aa3.66□□□□□ -1.82
HMGB1P38-201ENST00000490557 GOLGA6L7A0A1B0GV03 622 aa3.65□□□□□ -1.83
HMGB1P38-201ENST00000490557 FAM168BA1KXE4 195 aa3.65□□□□□ -1.83
HMGB1P38-201ENST00000490557 KLLNB2CW77 178 aa3.65□□□□□ -1.83
HMGB1P38-201ENST00000490557 KIF2AO00139 706 aaPredicted RBP3.65□□□□□ -1.83
HMGB1P38-201ENST00000490557 MAPK13O15264 365 aa3.65□□□□□ -1.83
HMGB1P38-201ENST00000490557 SPOPO43791 374 aa3.65□□□□□ -1.83
HMGB1P38-201ENST00000490557 TYROBPO43914 113 aa3.65□□□□□ -1.83
HMGB1P38-201ENST00000490557 LCMT2O60294 686 aaKnown RBP3.65□□□□□ -1.83
HMGB1P38-201ENST00000490557 SURF6O75683 361 aaKnown RBP3.65□□□□□ -1.83
HMGB1P38-201ENST00000490557 IGHV3-9P01782 118 aa3.65□□□□□ -1.83
HMGB1P38-201ENST00000490557 POLR2MP0CAP2 368 aa3.65□□□□□ -1.83
HMGB1P38-201ENST00000490557 CCDC130P13994 396 aa3.65□□□□□ -1.83
HMGB1P38-201ENST00000490557 MAT2AP31153 395 aaKnown RBP3.65□□□□□ -1.83
HMGB1P38-201ENST00000490557 OTX2P32243 289 aa3.65□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms