RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 SPPL2AQ8TCT8 520 aa11.24□□□□□ -0.61
SDC1-206ENST00000482879 FIG4Q92562 907 aa11.24□□□□□ -0.61
SDC1-206ENST00000482879 PMM1Q92871 262 aa11.24□□□□□ -0.61
SDC1-206ENST00000482879 ZG16BQ96DA0 208 aa11.24□□□□□ -0.61
SDC1-206ENST00000482879 ABHD17AQ96GS6 310 aa11.24□□□□□ -0.61
SDC1-206ENST00000482879 NODALQ96S42 347 aa11.24□□□□□ -0.61
SDC1-206ENST00000482879 ZNF607Q96SK3 696 aa11.24□□□□□ -0.61
SDC1-206ENST00000482879 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP11.24□□□□□ -0.612e-6■■■□□ 14.8
SDC1-206ENST00000482879 UBQLN4Q9NRR5 601 aa11.24□□□□□ -0.61
SDC1-206ENST00000482879 PCDHGA10Q9Y5H3 936 aa11.24□□□□□ -0.61
SDC1-206ENST00000482879 HEATR5AQ86XA9 2040 aa11.24□□□□□ -0.61
SDC1-206ENST00000482879 FREM3P0C091 2139 aa11.24□□□□□ -0.61
SDC1-206ENST00000482879 CACNA1BQ00975 2339 aa11.23□□□□□ -0.61
SDC1-206ENST00000482879 M0QX08 132 aa11.23□□□□□ -0.61
SDC1-206ENST00000482879 GMNNO75496 209 aa11.23□□□□□ -0.61
SDC1-206ENST00000482879 GCM2O75603 506 aaPredicted RBP11.23□□□□□ -0.61
SDC1-206ENST00000482879 PDE9AO76083 593 aa11.23□□□□□ -0.61
SDC1-206ENST00000482879 ETS2P15036 469 aa11.23□□□□□ -0.61
SDC1-206ENST00000482879 HPGDP15428 266 aa11.23□□□□□ -0.61
SDC1-206ENST00000482879 NCK1P16333 377 aa11.23□□□□□ -0.61
SDC1-206ENST00000482879 GGT1P19440 569 aa11.23□□□□□ -0.61
SDC1-206ENST00000482879 TBXA2RP21731 343 aa11.23□□□□□ -0.61
SDC1-206ENST00000482879 CLK3P49761 638 aaKnown RBP11.23□□□□□ -0.61
SDC1-206ENST00000482879 PCBP3P57721 371 aaKnown RBP11.23□□□□□ -0.61
SDC1-206ENST00000482879 BNIP2Q12982 314 aa11.23□□□□□ -0.61
SDC1-206ENST00000482879 ZNF141Q15928 474 aa11.23□□□□□ -0.61
SDC1-206ENST00000482879 ST3GAL2Q16842 350 aa11.23□□□□□ -0.61
SDC1-206ENST00000482879 GLYATQ6IB77 296 aa11.23□□□□□ -0.61
SDC1-206ENST00000482879 PGM2L1Q6PCE3 622 aa11.23□□□□□ -0.61
SDC1-206ENST00000482879 CCDC80Q76M96 950 aa11.23□□□□□ -0.61
SDC1-206ENST00000482879 MDGA2Q7Z553 956 aa11.23□□□□□ -0.61
SDC1-206ENST00000482879 PATL1Q86TB9 770 aaKnown RBP11.23□□□□□ -0.61
SDC1-206ENST00000482879 ZNF227Q86WZ6 799 aa11.23□□□□□ -0.61
SDC1-206ENST00000482879 PEX5LQ8IYB4 626 aa11.23□□□□□ -0.61
SDC1-206ENST00000482879 ULK2Q8IYT8 1036 aa11.23□□□□□ -0.61
SDC1-206ENST00000482879 ZADH2Q8N4Q0 377 aa11.23□□□□□ -0.61
SDC1-206ENST00000482879 ZNF614Q8N883 585 aa11.23□□□□□ -0.61
SDC1-206ENST00000482879 ZNF527Q8NB42 609 aa11.23□□□□□ -0.61
SDC1-206ENST00000482879 GOLM1Q8NBJ4 401 aa11.23□□□□□ -0.61
SDC1-206ENST00000482879 CATSPER1Q8NEC5 780 aa11.23□□□□□ -0.61
SDC1-206ENST00000482879 TM9SF4Q92544 642 aa11.23□□□□□ -0.61
SDC1-206ENST00000482879 SIGLEC12Q96PQ1 595 aa11.23□□□□□ -0.61
SDC1-206ENST00000482879 SECISBP2Q96T21 854 aaKnown RBP11.23□□□□□ -0.61
SDC1-206ENST00000482879 QRSL1Q9H0R6 528 aaKnown RBP11.23□□□□□ -0.61
SDC1-206ENST00000482879 PCDHAC1Q9H158 963 aa11.23□□□□□ -0.61
SDC1-206ENST00000482879 MMADHCQ9H3L0 296 aaPredicted RBP11.23□□□□□ -0.61
SDC1-206ENST00000482879 METTL7AQ9H8H3 244 aa11.23□□□□□ -0.61
SDC1-206ENST00000482879 CACYBPQ9HB71 228 aaKnown RBP11.23□□□□□ -0.61
SDC1-206ENST00000482879 SH2D2AQ9NP31 389 aa11.23□□□□□ -0.61
SDC1-206ENST00000482879 TIMMDC1Q9NPL8 285 aa11.23□□□□□ -0.61
SDC1-206ENST00000482879 SUCOQ9UBS9 1254 aaKnown RBP11.23□□□□□ -0.61
SDC1-206ENST00000482879 KCNE5Q9UJ90 142 aa11.23□□□□□ -0.61
SDC1-206ENST00000482879 ZNF232Q9UNY5 417 aa11.23□□□□□ -0.61
SDC1-206ENST00000482879 PCDHGB7Q9Y5F8 929 aa11.23□□□□□ -0.61
SDC1-206ENST00000482879 CHCHD2Q9Y6H1 151 aaPredicted RBP11.23□□□□□ -0.61
SDC1-206ENST00000482879 LOC400499M0QZD8 3231 aa11.22□□□□□ -0.61
SDC1-206ENST00000482879 PRAMEF25A6NGN4 478 aa11.22□□□□□ -0.61
SDC1-206ENST00000482879 AGAP5A6NIR3 686 aa11.22□□□□□ -0.61
SDC1-206ENST00000482879 NPIPB9F8W1W9 429 aa11.22□□□□□ -0.61
SDC1-206ENST00000482879 K7EM74 188 aa11.22□□□□□ -0.61
SDC1-206ENST00000482879 SCDO00767 359 aa11.22□□□□□ -0.61
SDC1-206ENST00000482879 FADS1O60427 444 aa11.22□□□□□ -0.61
SDC1-206ENST00000482879 SERPINB7O75635 380 aa11.22□□□□□ -0.61
SDC1-206ENST00000482879 UGT2B17O75795 530 aa11.22□□□□□ -0.61
SDC1-206ENST00000482879 NEURL1O76050 574 aa11.22□□□□□ -0.61
SDC1-206ENST00000482879 OXSR1O95747 527 aaPredicted RBP11.22□□□□□ -0.61
SDC1-206ENST00000482879 P04436 131 aa11.22□□□□□ -0.61
SDC1-206ENST00000482879 DBIP07108 87 aaKnown RBP11.22□□□□□ -0.61
SDC1-206ENST00000482879 NGFRP08138 427 aa11.22□□□□□ -0.61
SDC1-206ENST00000482879 FAM87AP0C7U9 286 aa11.22□□□□□ -0.61
SDC1-206ENST00000482879 CCL3P10147 92 aa11.22□□□□□ -0.61
SDC1-206ENST00000482879 CD46P15529 392 aa11.22□□□□□ -0.61
SDC1-206ENST00000482879 IL7RP16871 459 aa11.22□□□□□ -0.61
SDC1-206ENST00000482879 KDELR2P33947 212 aa11.22□□□□□ -0.61
SDC1-206ENST00000482879 EVI2BP34910 448 aa11.22□□□□□ -0.61
SDC1-206ENST00000482879 CASP3P42574 277 aa11.22□□□□□ -0.61
SDC1-206ENST00000482879 RNF144AP50876 292 aaPredicted RBP11.22□□□□□ -0.61
SDC1-206ENST00000482879 RHDQ02161 417 aa11.22□□□□□ -0.61
SDC1-206ENST00000482879 KCNAB2Q13303 367 aa11.22□□□□□ -0.61
SDC1-206ENST00000482879 TRIM25Q14258 630 aaKnown RBP11.22□□□□□ -0.61
SDC1-206ENST00000482879 MAPK14Q16539 360 aa11.22□□□□□ -0.61
SDC1-206ENST00000482879 FXNQ16595 210 aa11.22□□□□□ -0.61
SDC1-206ENST00000482879 KLHL26Q53HC5 615 aa11.22□□□□□ -0.61
SDC1-206ENST00000482879 PDZK1Q5T2W1 519 aa11.22□□□□□ -0.61
SDC1-206ENST00000482879 BICRALQ6AI39 1079 aa11.22□□□□□ -0.61
SDC1-206ENST00000482879 IGFL3Q6UXB1 125 aa11.22□□□□□ -0.61
SDC1-206ENST00000482879 MARCH3Q86UD3 253 aa11.22□□□□□ -0.61
SDC1-206ENST00000482879 PTRH1Q86Y79 214 aaKnown RBP11.22□□□□□ -0.61
SDC1-206ENST00000482879 POGLUT1Q8NBL1 392 aa11.22□□□□□ -0.61
SDC1-206ENST00000482879 MDS2Q8NDY4 140 aa11.22□□□□□ -0.61
SDC1-206ENST00000482879 OR52P1PQ8NH57 321 aa11.22□□□□□ -0.61
SDC1-206ENST00000482879 GRHL3Q8TE85 626 aa11.22□□□□□ -0.61
SDC1-206ENST00000482879 PAQR8Q8TEZ7 354 aa11.22□□□□□ -0.61
SDC1-206ENST00000482879 FAM162AQ96A26 154 aa11.22□□□□□ -0.61
SDC1-206ENST00000482879 CCDC124Q96CT7 223 aaKnown RBP11.22□□□□□ -0.61
SDC1-206ENST00000482879 SPATA5L1Q9BVQ7 753 aa11.22□□□□□ -0.61
SDC1-206ENST00000482879 TBL1XR1Q9BZK7 514 aa11.22□□□□□ -0.61
SDC1-206ENST00000482879 SACM1LQ9NTJ5 587 aa11.22□□□□□ -0.61
SDC1-206ENST00000482879 KLRF1Q9NZS2 232 aa11.22□□□□□ -0.61
SDC1-206ENST00000482879 DSPPQ9NZW4 1301 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 62.9 ms