RNA–Protein interactions for RNA: ENST00000473373.1

CPNE1-222, Transcript of copine 1, human

TSL 2

Gene CPNE1, Length 821 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPNE1-222	ENST00000473373	PDZD2	O15018	2839 aa		10.48	□□□□□ -0.73
CPNE1-222	ENST00000473373	TRPC5OS	A6NMA1	111 aa		10.47	□□□□□ -0.73
CPNE1-222	ENST00000473373	EEF1E1-BLOC1S5	C9J1V9	151 aa		10.47	□□□□□ -0.73
CPNE1-222	ENST00000473373	SEC14L5	O43304	696 aa		10.47	□□□□□ -0.73
CPNE1-222	ENST00000473373	EEF1E1	O43324	174 aa	Known RBP	10.47	□□□□□ -0.73
CPNE1-222	ENST00000473373	NKX2-2	O95096	273 aa		10.47	□□□□□ -0.73
CPNE1-222	ENST00000473373	ANGPTL1	O95841	491 aa		10.47	□□□□□ -0.73
CPNE1-222	ENST00000473373	EPPIN	O95925	133 aa		10.47	□□□□□ -0.73
CPNE1-222	ENST00000473373	HMGN2	P05204	90 aa	Known RBP	10.47	□□□□□ -0.73
CPNE1-222	ENST00000473373	DHRS4L1	P0CG22	281 aa		10.47	□□□□□ -0.73
CPNE1-222	ENST00000473373	SSTR2	P30874	369 aa		10.47	□□□□□ -0.73
CPNE1-222	ENST00000473373	FRK	P42685	505 aa	Predicted RBP	10.47	□□□□□ -0.73
CPNE1-222	ENST00000473373	KIR3DL1	P43629	444 aa		10.47	□□□□□ -0.73
CPNE1-222	ENST00000473373	STAR	P49675	285 aa		10.47	□□□□□ -0.73
CPNE1-222	ENST00000473373	ZNF41	P51814	821 aa	Predicted RBP	10.47	□□□□□ -0.73
CPNE1-222	ENST00000473373	CLNS1A	P54105	237 aa	Known RBP	10.47	□□□□□ -0.73
CPNE1-222	ENST00000473373	NME5	P56597	212 aa		10.47	□□□□□ -0.73
CPNE1-222	ENST00000473373	CLDN8	P56748	225 aa		10.47	□□□□□ -0.73
CPNE1-222	ENST00000473373	GANAB	Q14697	944 aa	Known RBP	10.47	□□□□□ -0.73
CPNE1-222	ENST00000473373	CASP8	Q14790	479 aa		10.47	□□□□□ -0.73
CPNE1-222	ENST00000473373	MLC1	Q15049	377 aa		10.47	□□□□□ -0.73
CPNE1-222	ENST00000473373	DUSP5	Q16690	384 aa		10.47	□□□□□ -0.73
CPNE1-222	ENST00000473373	SMU1	Q2TAY7	513 aa		10.47	□□□□□ -0.73
CPNE1-222	ENST00000473373	DCST1	Q5T197	706 aa		10.47	□□□□□ -0.73
CPNE1-222	ENST00000473373	CCNJ	Q5T5M9	372 aa		10.47	□□□□□ -0.73
CPNE1-222	ENST00000473373	FBXW10	Q5XX13	1052 aa		10.47	□□□□□ -0.73
CPNE1-222	ENST00000473373	OR4F3	Q6IEY1	312 aa		10.47	□□□□□ -0.73
CPNE1-222	ENST00000473373	MFSD12	Q6NUT3	480 aa		10.47	□□□□□ -0.73
CPNE1-222	ENST00000473373	ZNF527	Q8NB42	609 aa		10.47	□□□□□ -0.73
CPNE1-222	ENST00000473373	SLC16A11	Q8NCK7	471 aa		10.47	□□□□□ -0.73
CPNE1-222	ENST00000473373	TNIP2	Q8NFZ5	429 aa		10.47	□□□□□ -0.73
CPNE1-222	ENST00000473373	DYDC1	Q8WWB3	177 aa		10.47	□□□□□ -0.73
CPNE1-222	ENST00000473373	CDS1	Q92903	461 aa		10.47	□□□□□ -0.73
CPNE1-222	ENST00000473373	C16orf58	Q96GQ5	468 aa		10.47	□□□□□ -0.73
CPNE1-222	ENST00000473373	WDYHV1	Q96HA8	205 aa		10.47	□□□□□ -0.73
CPNE1-222	ENST00000473373	SH3YL1	Q96HL8	342 aa	Predicted RBP	10.47	□□□□□ -0.73
CPNE1-222	ENST00000473373	SLC35G5	Q96KT7	338 aa		10.47	□□□□□ -0.73
CPNE1-222	ENST00000473373	ZBTB18	Q99592	522 aa		10.47	□□□□□ -0.73
CPNE1-222	ENST00000473373	ZNF559	Q9BR84	538 aa		10.47	□□□□□ -0.73
CPNE1-222	ENST00000473373	ACTRT3	Q9BYD9	372 aa		10.47	□□□□□ -0.73
CPNE1-222	ENST00000473373	PRDM14	Q9GZV8	571 aa		10.47	□□□□□ -0.73
CPNE1-222	ENST00000473373	SLC24A3	Q9HC58	644 aa		10.47	□□□□□ -0.73
CPNE1-222	ENST00000473373	PNPO	Q9NVS9	261 aa		10.47	□□□□□ -0.73
CPNE1-222	ENST00000473373	GIN1	Q9NXP7	522 aa		10.47	□□□□□ -0.73
CPNE1-222	ENST00000473373	VDAC3	Q9Y277	283 aa		10.47	□□□□□ -0.73
CPNE1-222	ENST00000473373	GOLGA8Q	A0A0J9YX86	632 aa		10.46	□□□□□ -0.73
CPNE1-222	ENST00000473373	GOLGA8O	A6NCC3	632 aa		10.46	□□□□□ -0.73
CPNE1-222	ENST00000473373	GOLGA8N	F8WBI6	632 aa		10.46	□□□□□ -0.73
CPNE1-222	ENST00000473373		H3BNH8	94 aa		10.46	□□□□□ -0.73
CPNE1-222	ENST00000473373	GTPBP1	O00178	669 aa	Known RBP	10.46	□□□□□ -0.73
CPNE1-222	ENST00000473373	KCNK2	O95069	426 aa		10.46	□□□□□ -0.73
CPNE1-222	ENST00000473373	PSMG1	O95456	288 aa		10.46	□□□□□ -0.73
CPNE1-222	ENST00000473373	OXSR1	O95747	527 aa	Predicted RBP	10.46	□□□□□ -0.73
CPNE1-222	ENST00000473373	TMIGD3	P0DMS9	266 aa	Predicted RBP	10.46	□□□□□ -0.73
CPNE1-222	ENST00000473373	PEPD	P12955	493 aa		10.46	□□□□□ -0.73
CPNE1-222	ENST00000473373	S100A3	P33764	101 aa		10.46	□□□□□ -0.73
CPNE1-222	ENST00000473373	CHI3L1	P36222	383 aa	Predicted RBP	10.46	□□□□□ -0.73
CPNE1-222	ENST00000473373	ADH7	P40394	386 aa		10.46	□□□□□ -0.73
CPNE1-222	ENST00000473373	CPA2	P48052	419 aa		10.46	□□□□□ -0.73
CPNE1-222	ENST00000473373	AGFG1	P52594	562 aa	Known RBP	10.46	□□□□□ -0.73
CPNE1-222	ENST00000473373	DIO3	P55073	304 aa		10.46	□□□□□ -0.73
CPNE1-222	ENST00000473373	EEFSEC	P57772	596 aa	Known RBP	10.46	□□□□□ -0.73
CPNE1-222	ENST00000473373	RPS3A	P61247	264 aa	Known RBP	10.46	□□□□□ -0.73
CPNE1-222	ENST00000473373	TLE4	Q04727	773 aa		10.46	□□□□□ -0.73
CPNE1-222	ENST00000473373	SGCB	Q16585	318 aa		10.46	□□□□□ -0.73
CPNE1-222	ENST00000473373	NHSL2	Q5HYW2	709 aa		10.46	□□□□□ -0.73
CPNE1-222	ENST00000473373	BEND6	Q5SZJ8	279 aa	Predicted RBP	10.46	□□□□□ -0.73
CPNE1-222	ENST00000473373	ANXA8L1	Q5VT79	327 aa		10.46	□□□□□ -0.73
CPNE1-222	ENST00000473373	NSUN5P2	Q63ZY6	315 aa		10.46	□□□□□ -0.73
CPNE1-222	ENST00000473373	CDC73	Q6P1J9	531 aa		10.46	□□□□□ -0.73
CPNE1-222	ENST00000473373	TMEM200A	Q86VY9	491 aa		10.46	□□□□□ -0.73
CPNE1-222	ENST00000473373	TMCO5A	Q8N6Q1	288 aa		10.46	□□□□□ -0.73
CPNE1-222	ENST00000473373	OR2M3	Q8NG83	312 aa		10.46	□□□□□ -0.73
CPNE1-222	ENST00000473373	PHOSPHO1	Q8TCT1	267 aa		10.46	□□□□□ -0.73
CPNE1-222	ENST00000473373	SFXN5	Q8TD22	340 aa		10.46	□□□□□ -0.73
CPNE1-222	ENST00000473373	SORT1	Q99523	831 aa		10.46	□□□□□ -0.73
CPNE1-222	ENST00000473373	TM9SF2	Q99805	663 aa		10.46	□□□□□ -0.73
CPNE1-222	ENST00000473373	PIGQ	Q9BRB3	760 aa		10.46	□□□□□ -0.73
CPNE1-222	ENST00000473373	BTBD2	Q9BX70	525 aa		10.46	□□□□□ -0.73
CPNE1-222	ENST00000473373	PRRG4	Q9BZD6	226 aa		10.46	□□□□□ -0.73
CPNE1-222	ENST00000473373	C20orf27	Q9GZN8	174 aa		10.46	□□□□□ -0.73
CPNE1-222	ENST00000473373	CXorf36	Q9H7Y0	433 aa		10.46	□□□□□ -0.73
CPNE1-222	ENST00000473373	MANSC1	Q9H8J5	431 aa		10.46	□□□□□ -0.73
CPNE1-222	ENST00000473373	TMBIM4	Q9HC24	238 aa		10.46	□□□□□ -0.73
CPNE1-222	ENST00000473373	THAP1	Q9NVV9	213 aa		10.46	□□□□□ -0.73
CPNE1-222	ENST00000473373	MPDZ	O75970	2070 aa		10.46	□□□□□ -0.74
CPNE1-222	ENST00000473373	HEATR5A	Q86XA9	2040 aa		10.45	□□□□□ -0.74
CPNE1-222	ENST00000473373	RNF103-CHMP3	A0A140T963	221 aa		10.45	□□□□□ -0.74
CPNE1-222	ENST00000473373	CLCA1	A8K7I4	914 aa		10.45	□□□□□ -0.74
CPNE1-222	ENST00000473373	C17orf51	A8MQB3	221 aa		10.45	□□□□□ -0.74
CPNE1-222	ENST00000473373	SLCO1B7	G3V0H7	640 aa		10.45	□□□□□ -0.74
CPNE1-222	ENST00000473373	FADS1	O60427	444 aa		10.45	□□□□□ -0.74
CPNE1-222	ENST00000473373	TOX	O94900	526 aa		10.45	□□□□□ -0.74
CPNE1-222	ENST00000473373	SOX30	O94993	753 aa		10.45	□□□□□ -0.74
CPNE1-222	ENST00000473373	IGKV1D-16	P01601	117 aa		10.45	□□□□□ -0.74
CPNE1-222	ENST00000473373	MATN1	P21941	496 aa		10.45	□□□□□ -0.74
CPNE1-222	ENST00000473373	ME2	P23368	584 aa		10.45	□□□□□ -0.74
CPNE1-222	ENST00000473373	CHM	P24386	653 aa		10.45	□□□□□ -0.74
CPNE1-222	ENST00000473373	MSX1	P28360	303 aa		10.45	□□□□□ -0.74
CPNE1-222	ENST00000473373	OPRM1	P35372	400 aa		10.45	□□□□□ -0.74

Retrieved 100 of 20,778 RNA–protein pairs in 58 ms