RNA–Protein interactions for RNA: ENST00000471309.1

VPS52-216, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 505 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-216ENST00000471309 ZAR1Q86SH2 424 aa8.68□□□□□ -1.02
VPS52-216ENST00000471309 RANBP3LQ86VV4 465 aaPredicted RBP8.68□□□□□ -1.02
VPS52-216ENST00000471309 GRAMD2AQ8IUY3 354 aa8.68□□□□□ -1.02
VPS52-216ENST00000471309 C9orf40Q8IXQ3 194 aa8.68□□□□□ -1.02
VPS52-216ENST00000471309 CMIPQ8IY22 773 aa8.68□□□□□ -1.02
VPS52-216ENST00000471309 CLIP4Q8N3C7 705 aa8.68□□□□□ -1.02
VPS52-216ENST00000471309 LINC00471Q8N535 108 aa8.68□□□□□ -1.02
VPS52-216ENST00000471309 SLC5A8Q8N695 610 aa8.68□□□□□ -1.02
VPS52-216ENST00000471309 BCORP1Q8N888 145 aa8.68□□□□□ -1.02
VPS52-216ENST00000471309 C17orf47Q8NEP4 570 aa8.68□□□□□ -1.02
VPS52-216ENST00000471309 OR4N2Q8NGD1 307 aa8.68□□□□□ -1.02
VPS52-216ENST00000471309 METTL21AQ8WXB1 218 aa8.68□□□□□ -1.02
VPS52-216ENST00000471309 DIO2Q92813 273 aa8.68□□□□□ -1.02
VPS52-216ENST00000471309 LIN37Q96GY3 246 aaPredicted RBP8.68□□□□□ -1.02
VPS52-216ENST00000471309 LCORQ96JN0 433 aaPredicted RBP8.68□□□□□ -1.02
VPS52-216ENST00000471309 FEVQ99581 238 aa8.68□□□□□ -1.02
VPS52-216ENST00000471309 ZPBPQ9BS86 351 aa8.68□□□□□ -1.02
VPS52-216ENST00000471309 CRB3Q9BUF7 120 aa8.68□□□□□ -1.02
VPS52-216ENST00000471309 FNDC11Q9BVV2 318 aa8.68□□□□□ -1.02
VPS52-216ENST00000471309 DDA1Q9BW61 102 aa8.68□□□□□ -1.02
VPS52-216ENST00000471309 NUDT9Q9BW91 350 aa8.68□□□□□ -1.02
VPS52-216ENST00000471309 ULBP3Q9BZM4 244 aa8.68□□□□□ -1.02
VPS52-216ENST00000471309 SOX17Q9H6I2 414 aaPredicted RBP8.68□□□□□ -1.02
VPS52-216ENST00000471309 PARD6AQ9NPB6 346 aa8.68□□□□□ -1.02
VPS52-216ENST00000471309 MAN2C1Q9NTJ4 1040 aa8.68□□□□□ -1.02
VPS52-216ENST00000471309 FAM118AQ9NWS6 357 aa8.68□□□□□ -1.02
VPS52-216ENST00000471309 C19orf25Q9UFG5 118 aaPredicted RBP8.68□□□□□ -1.02
VPS52-216ENST00000471309 TESQ9UGI8 421 aaKnown RBP8.68□□□□□ -1.02
VPS52-216ENST00000471309 ENOPH1Q9UHY7 261 aa8.68□□□□□ -1.02
VPS52-216ENST00000471309 MRTO4Q9UKD2 239 aaKnown RBP8.68□□□□□ -1.02
VPS52-216ENST00000471309 TMCC3Q9ULS5 477 aa8.68□□□□□ -1.02
VPS52-216ENST00000471309 PPIEQ9UNP9 301 aaKnown RBP8.68□□□□□ -1.02
VPS52-216ENST00000471309 NPIPA5A0A0B4J1W7 369 aa8.67□□□□□ -1.02
VPS52-216ENST00000471309 C2orf92A0A1B0GVN3 265 aa8.67□□□□□ -1.02
VPS52-216ENST00000471309 C4orf47A7E2U8 309 aa8.67□□□□□ -1.02
VPS52-216ENST00000471309 C9J4A7 227 aa8.67□□□□□ -1.02
VPS52-216ENST00000471309 NPIPA7E9PJI5 369 aa8.67□□□□□ -1.02
VPS52-216ENST00000471309 E9PQ18 207 aa8.67□□□□□ -1.02
VPS52-216ENST00000471309 AP3D1O14617 1153 aa8.67□□□□□ -1.02
VPS52-216ENST00000471309 PCDH17O14917 1159 aa8.67□□□□□ -1.02
VPS52-216ENST00000471309 TO15178 435 aa8.67□□□□□ -1.02
VPS52-216ENST00000471309 FRS3O43559 492 aa8.67□□□□□ -1.02
VPS52-216ENST00000471309 MITFO75030 526 aaPredicted RBP8.67□□□□□ -1.02
VPS52-216ENST00000471309 UGT2B11O75310 529 aa8.67□□□□□ -1.02
VPS52-216ENST00000471309 OR5F1O95221 314 aa8.67□□□□□ -1.02
VPS52-216ENST00000471309 IL33O95760 270 aa8.67□□□□□ -1.02
VPS52-216ENST00000471309 ADAP00813 363 aa8.67□□□□□ -1.02
VPS52-216ENST00000471309 CCNYL3P0C7X3 344 aa8.67□□□□□ -1.02
VPS52-216ENST00000471309 NPIPA8P0DM63 369 aa8.67□□□□□ -1.02
VPS52-216ENST00000471309 SPTBP11277 2137 aa8.67□□□□□ -1.02
VPS52-216ENST00000471309 CDK4P11802 303 aa8.67□□□□□ -1.02
VPS52-216ENST00000471309 FUT4P22083 530 aa8.67□□□□□ -1.02
VPS52-216ENST00000471309 LCN1P31025 176 aa8.67□□□□□ -1.02
VPS52-216ENST00000471309 IFNA8P32881 189 aa8.67□□□□□ -1.02
VPS52-216ENST00000471309 RFX3P48380 749 aa8.67□□□□□ -1.02
VPS52-216ENST00000471309 GPR143P51810 404 aa8.67□□□□□ -1.02
VPS52-216ENST00000471309 ZNF136P52737 540 aa8.67□□□□□ -1.02
VPS52-216ENST00000471309 ATP12AP54707 1039 aa8.67□□□□□ -1.02
VPS52-216ENST00000471309 EMP2P54851 167 aa8.67□□□□□ -1.02
VPS52-216ENST00000471309 TAS2R41P59536 307 aa8.67□□□□□ -1.02
VPS52-216ENST00000471309 PLAURQ03405 335 aa8.67□□□□□ -1.02
VPS52-216ENST00000471309 EIF3IQ13347 325 aaKnown RBP8.67□□□□□ -1.02
VPS52-216ENST00000471309 FGFBP1Q14512 234 aa8.67□□□□□ -1.02
VPS52-216ENST00000471309 TRAM2Q15035 370 aa8.67□□□□□ -1.02
VPS52-216ENST00000471309 DECR1Q16698 335 aa8.67□□□□□ -1.02
VPS52-216ENST00000471309 DCST1Q5T197 706 aa8.67□□□□□ -1.02
VPS52-216ENST00000471309 PDZK1Q5T2W1 519 aa8.67□□□□□ -1.02
VPS52-216ENST00000471309 DCAF12Q5T6F0 453 aa8.67□□□□□ -1.02
VPS52-216ENST00000471309 HLA-DQA1Q5Y7H0 255 aa8.67□□□□□ -1.02
VPS52-216ENST00000471309 LCN10Q6JVE6 187 aa8.67□□□□□ -1.02
VPS52-216ENST00000471309 TMEM205Q6UW68 189 aa8.67□□□□□ -1.02
VPS52-216ENST00000471309 PLEKHM3Q6ZWE6 761 aa8.67□□□□□ -1.02
VPS52-216ENST00000471309 RAB11FIP2Q7L804 512 aa8.67□□□□□ -1.02
VPS52-216ENST00000471309 SLC29A4Q7RTT9 530 aa8.67□□□□□ -1.02
VPS52-216ENST00000471309 GALNT5Q7Z7M9 940 aa8.67□□□□□ -1.02
VPS52-216ENST00000471309 PIP4P1Q86T03 277 aa8.67□□□□□ -1.02
VPS52-216ENST00000471309 TSPYL5Q86VY4 417 aaPredicted RBP8.67□□□□□ -1.02
VPS52-216ENST00000471309 C8orf59Q8N0T1 100 aaPredicted RBP8.67□□□□□ -1.02
VPS52-216ENST00000471309 PARP8Q8N3A8 854 aa8.67□□□□□ -1.02
VPS52-216ENST00000471309 ZNF441Q8N8Z8 693 aa8.67□□□□□ -1.02
VPS52-216ENST00000471309 AQP11Q8NBQ7 271 aa8.67□□□□□ -1.02
VPS52-216ENST00000471309 B3GNT7Q8NFL0 401 aa8.67□□□□□ -1.02
VPS52-216ENST00000471309 TOR1AIP2Q8NFQ8 470 aa8.67□□□□□ -1.02
VPS52-216ENST00000471309 OR9Q2Q8NGE9 314 aa8.67□□□□□ -1.02
VPS52-216ENST00000471309 SLC7A13Q8TCU3 470 aa8.67□□□□□ -1.02
VPS52-216ENST00000471309 PMEPA1Q969W9 287 aa8.67□□□□□ -1.02
VPS52-216ENST00000471309 ADIPOR1Q96A54 375 aa8.67□□□□□ -1.02
VPS52-216ENST00000471309 RNF31Q96EP0 1072 aa8.67□□□□□ -1.02
VPS52-216ENST00000471309 DEPDC7Q96QD5 511 aa8.67□□□□□ -1.02
VPS52-216ENST00000471309 PITX2Q99697 317 aa8.67□□□□□ -1.02
VPS52-216ENST00000471309 MCHR1Q99705 422 aa8.67□□□□□ -1.02
VPS52-216ENST00000471309 SEMA4CQ9C0C4 833 aa8.67□□□□□ -1.02
VPS52-216ENST00000471309 GRIP2Q9C0E4 1043 aa8.67□□□□□ -1.02
VPS52-216ENST00000471309 WWTR1Q9GZV5 400 aa8.67□□□□□ -1.02
VPS52-216ENST00000471309 HOXD1Q9GZZ0 328 aa8.67□□□□□ -1.02
VPS52-216ENST00000471309 NXF5Q9H1B4 397 aaKnown RBP8.67□□□□□ -1.02
VPS52-216ENST00000471309 IRF2BPLQ9H1B7 796 aa8.67□□□□□ -1.02
VPS52-216ENST00000471309 RIBC2Q9H4K1 309 aa8.67□□□□□ -1.02
VPS52-216ENST00000471309 ZNF696Q9H7X3 374 aa8.67□□□□□ -1.02
VPS52-216ENST00000471309 ZNF556Q9HAH1 456 aa8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms