RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 PTTG1O95997 202 aa14.03□□□□□ -0.16
LDLR-202ENST00000455727 IL1AP01583 271 aa14.03□□□□□ -0.16
LDLR-202ENST00000455727 HMGN1P05114 100 aa14.03□□□□□ -0.16
LDLR-202ENST00000455727 NID1P14543 1247 aa14.03□□□□□ -0.16
LDLR-202ENST00000455727 GLULP15104 373 aa14.03□□□□□ -0.16
LDLR-202ENST00000455727 PVRP15151 417 aa14.03□□□□□ -0.16
LDLR-202ENST00000455727 MGAT2Q10469 447 aa14.03□□□□□ -0.16
LDLR-202ENST00000455727 GPR68Q15743 365 aa14.03□□□□□ -0.16
LDLR-202ENST00000455727 PLK5Q496M5 336 aa14.03□□□□□ -0.16
LDLR-202ENST00000455727 PRSS41Q7RTY9 318 aa14.03□□□□□ -0.16
LDLR-202ENST00000455727 LAPTM4BQ86VI4 370 aa14.03□□□□□ -0.16
LDLR-202ENST00000455727 CADM3Q8N126 398 aa14.03□□□□□ -0.16
LDLR-202ENST00000455727 CA13Q8N1Q1 262 aa14.03□□□□□ -0.16
LDLR-202ENST00000455727 CSNK1A1LQ8N752 337 aa14.03□□□□□ -0.16
LDLR-202ENST00000455727 SLC37A2Q8TED4 501 aa14.03□□□□□ -0.16
LDLR-202ENST00000455727 CTHRC1Q96CG8 243 aa14.03□□□□□ -0.16
LDLR-202ENST00000455727 TRMT61AQ96FX7 289 aaKnown RBP14.03□□□□□ -0.16
LDLR-202ENST00000455727 SLC30A2Q9BRI3 323 aa14.03□□□□□ -0.16
LDLR-202ENST00000455727 CCDC32Q9BV29 185 aa14.03□□□□□ -0.16
LDLR-202ENST00000455727 BARHL1Q9BZE3 327 aa14.03□□□□□ -0.16
LDLR-202ENST00000455727 EVA1AQ9H8M9 152 aa14.03□□□□□ -0.16
LDLR-202ENST00000455727 ADAP2Q9NPF8 381 aa14.03□□□□□ -0.16
LDLR-202ENST00000455727 POLE3Q9NRF9 147 aa14.03□□□□□ -0.16
LDLR-202ENST00000455727 SLC7A7Q9UM01 511 aa14.03□□□□□ -0.16
LDLR-202ENST00000455727 TRAPPC4Q9Y296 219 aa14.03□□□□□ -0.16
LDLR-202ENST00000455727 WWP2O00308 870 aa14.02□□□□□ -0.16
LDLR-202ENST00000455727 CTDSP2O14595 271 aa14.02□□□□□ -0.16
LDLR-202ENST00000455727 NTN1O95631 604 aa14.02□□□□□ -0.16
LDLR-202ENST00000455727 NT5EP21589 574 aa14.02□□□□□ -0.16
LDLR-202ENST00000455727 EIF2B5Q13144 721 aaKnown RBP14.02□□□□□ -0.16
LDLR-202ENST00000455727 PGGHGQ32M88 737 aa14.02□□□□□ -0.16
LDLR-202ENST00000455727 FLYWCH1Q4VC44 716 aa14.02□□□□□ -0.16
LDLR-202ENST00000455727 CLEC12AQ5QGZ9 265 aa14.02□□□□□ -0.16
LDLR-202ENST00000455727 CCNJQ5T5M9 372 aa14.02□□□□□ -0.16
LDLR-202ENST00000455727 SLC44A3Q8N4M1 653 aa14.02□□□□□ -0.16
LDLR-202ENST00000455727 ZBTB8BQ8NAP8 495 aaPredicted RBP14.02□□□□□ -0.16
LDLR-202ENST00000455727 TMEM52Q8NDY8 209 aa14.02□□□□□ -0.16
LDLR-202ENST00000455727 HMGB4Q8WW32 186 aa14.02□□□□□ -0.16
LDLR-202ENST00000455727 KCNS3Q9BQ31 491 aa14.02□□□□□ -0.16
LDLR-202ENST00000455727 PRSS27Q9BQR3 290 aa14.02□□□□□ -0.16
LDLR-202ENST00000455727 SMURF1Q9HCE7 757 aa14.02□□□□□ -0.16
LDLR-202ENST00000455727 POLE4Q9NR33 117 aa14.02□□□□□ -0.16
LDLR-202ENST00000455727 GPR27Q9NS67 375 aa14.02□□□□□ -0.16
LDLR-202ENST00000455727 TXNL4BQ9NX01 149 aaKnown RBP14.02□□□□□ -0.16
LDLR-202ENST00000455727 MAT2BQ9NZL9 334 aa14.02□□□□□ -0.16
LDLR-202ENST00000455727 CARD8Q9Y2G2 431 aa14.02□□□□□ -0.16
LDLR-202ENST00000455727 SPTY2D1-AS1A0A0U1RR47 76 aa14.02□□□□□ -0.17
LDLR-202ENST00000455727 IQCMA0A1B0GVH7 501 aa14.02□□□□□ -0.17
LDLR-202ENST00000455727 TSPAN19P0C672 248 aa14.02□□□□□ -0.17
LDLR-202ENST00000455727 LIMS3P0CW19 117 aa14.02□□□□□ -0.17
LDLR-202ENST00000455727 LIMS4P0CW20 117 aa14.02□□□□□ -0.17
LDLR-202ENST00000455727 TNFSF8P32971 234 aa14.02□□□□□ -0.17
LDLR-202ENST00000455727 GPR4P46093 362 aa14.02□□□□□ -0.17
LDLR-202ENST00000455727 CDH11P55287 796 aa14.02□□□□□ -0.17
LDLR-202ENST00000455727 ID2Q02363 134 aa14.02□□□□□ -0.17
LDLR-202ENST00000455727 MAPK14Q16539 360 aa14.02□□□□□ -0.17
LDLR-202ENST00000455727 NXNL2Q5VZ03 156 aa14.02□□□□□ -0.17
LDLR-202ENST00000455727 KIAA0895LQ68EN5 471 aa14.02□□□□□ -0.17
LDLR-202ENST00000455727 SLC30A6Q6NXT4 461 aa14.02□□□□□ -0.17
LDLR-202ENST00000455727 TMEFF1Q8IYR6 380 aa14.02□□□□□ -0.17
LDLR-202ENST00000455727 COX18Q8N8Q8 333 aa14.02□□□□□ -0.17
LDLR-202ENST00000455727 POC5Q8NA72 575 aa14.02□□□□□ -0.17
LDLR-202ENST00000455727 ZNF485Q8NCK3 441 aa14.02□□□□□ -0.17
LDLR-202ENST00000455727 FAM83FQ8NEG4 500 aaPredicted RBP14.02□□□□□ -0.17
LDLR-202ENST00000455727 OR2T33Q8NG76 320 aa14.02□□□□□ -0.17
LDLR-202ENST00000455727 HOXB13Q92826 284 aaPredicted RBP14.02□□□□□ -0.17
LDLR-202ENST00000455727 NELL2Q99435 816 aa14.02□□□□□ -0.17
LDLR-202ENST00000455727 ARHGAP9Q9BRR9 750 aa14.02□□□□□ -0.17
LDLR-202ENST00000455727 TCEAL2Q9H3H9 227 aaPredicted RBP14.02□□□□□ -0.17
LDLR-202ENST00000455727 ZNF229Q9UJW7 825 aa14.02□□□□□ -0.17
LDLR-202ENST00000455727 EXOGQ9Y2C4 368 aaKnown RBP14.02□□□□□ -0.17
LDLR-202ENST00000455727 SPIN1Q9Y657 262 aaPredicted RBP14.02□□□□□ -0.17
LDLR-202ENST00000455727 SZT2Q5T011 3432 aa14.01□□□□□ -0.17
LDLR-202ENST00000455727 CENPVL1A0A0U1RR11 272 aa14.01□□□□□ -0.17
LDLR-202ENST00000455727 SLC35F4A4IF30 521 aa14.01□□□□□ -0.17
LDLR-202ENST00000455727 CDHR4A6H8M9 788 aa14.01□□□□□ -0.17
LDLR-202ENST00000455727 SHC2P98077 582 aa14.01□□□□□ -0.17
LDLR-202ENST00000455727 RUNX1T1Q06455 604 aa14.01□□□□□ -0.17
LDLR-202ENST00000455727 CBX3Q13185 183 aa14.01□□□□□ -0.17
LDLR-202ENST00000455727 OOSP2Q86WS3 158 aa14.01□□□□□ -0.17
LDLR-202ENST00000455727 BRIX1Q8TDN6 353 aaKnown RBP14.01□□□□□ -0.17
LDLR-202ENST00000455727 TM9SF4Q92544 642 aa14.01□□□□□ -0.17
LDLR-202ENST00000455727 SLC25A46Q96AG3 418 aa14.01□□□□□ -0.17
LDLR-202ENST00000455727 CEP19Q96LK0 163 aa14.01□□□□□ -0.17
LDLR-202ENST00000455727 WDFY2Q96P53 400 aa14.01□□□□□ -0.17
LDLR-202ENST00000455727 MED18Q9BUE0 208 aa14.01□□□□□ -0.17
LDLR-202ENST00000455727 FBXL21Q9UKT6 434 aa14.01□□□□□ -0.17
LDLR-202ENST00000455727 SF3B6Q9Y3B4 125 aaKnown RBP14.01□□□□□ -0.17
LDLR-202ENST00000455727 OR5K3A6NET4 321 aa14.01□□□□□ -0.17
LDLR-202ENST00000455727 PIP5K1CO60331 668 aa14.01□□□□□ -0.17
LDLR-202ENST00000455727 GUSBP08236 651 aa14.01□□□□□ -0.17
LDLR-202ENST00000455727 GTF2E2P29084 291 aaKnown RBP14.01□□□□□ -0.17
LDLR-202ENST00000455727 HTR1FP30939 366 aa14.01□□□□□ -0.17
LDLR-202ENST00000455727 RAB38P57729 211 aa14.01□□□□□ -0.17
LDLR-202ENST00000455727 SLC13A2Q13183 592 aa14.01□□□□□ -0.17
LDLR-202ENST00000455727 COL9A2Q14055 689 aaPredicted RBP14.01□□□□□ -0.17
LDLR-202ENST00000455727 MRPL2Q5T653 305 aaKnown RBP14.01□□□□□ -0.17
LDLR-202ENST00000455727 OR2G6Q5TZ20 316 aa14.01□□□□□ -0.17
LDLR-202ENST00000455727 GALNT12Q8IXK2 581 aa14.01□□□□□ -0.17
LDLR-202ENST00000455727 OR5T3Q8NGG3 340 aa14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms