RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 CXCL12P48061 93 aa14.53□□□□□ -0.08
PTPRF-206ENST00000429895 B3GNT3Q9Y2A9 372 aa14.53□□□□□ -0.08
PTPRF-206ENST00000429895 CARD8Q9Y2G2 431 aa14.53□□□□□ -0.08
PTPRF-206ENST00000429895 CSNK1G3Q9Y6M4 447 aa14.53□□□□□ -0.08
PTPRF-206ENST00000429895 PVRP15151 417 aa14.53□□□□□ -0.08
PTPRF-206ENST00000429895 PRPS1P60891 318 aa14.53□□□□□ -0.08
PTPRF-206ENST00000429895 IRF4Q15306 451 aa14.53□□□□□ -0.08
PTPRF-206ENST00000429895 PLCXD3Q63HM9 321 aa14.53□□□□□ -0.08
PTPRF-206ENST00000429895 EID2Q8N6I1 236 aa14.53□□□□□ -0.08
PTPRF-206ENST00000429895 RTP3Q9BQQ7 232 aa14.53□□□□□ -0.08
PTPRF-206ENST00000429895 CD93Q9NPY3 652 aa14.53□□□□□ -0.08
PTPRF-206ENST00000429895 BMP4P12644 408 aa14.53□□□□□ -0.08
PTPRF-206ENST00000429895 IL7P13232 177 aa14.53□□□□□ -0.08
PTPRF-206ENST00000429895 DDCP20711 480 aa14.53□□□□□ -0.08
PTPRF-206ENST00000429895 HOXC5Q00444 222 aa14.53□□□□□ -0.08
PTPRF-206ENST00000429895 MFSD6LQ8IWD5 586 aa14.53□□□□□ -0.08
PTPRF-206ENST00000429895 RSC1A1Q92681 617 aa14.53□□□□□ -0.08
PTPRF-206ENST00000429895 FAIMQ9NVQ4 179 aa14.53□□□□□ -0.08
PTPRF-206ENST00000429895 MKS1Q9NXB0 559 aa14.53□□□□□ -0.08
PTPRF-206ENST00000429895 POLHQ9Y253 713 aa14.53□□□□□ -0.08
PTPRF-206ENST00000429895 PEAK1Q9H792 1746 aa14.53□□□□□ -0.08
PTPRF-206ENST00000429895 JRKO75564 520 aa14.53□□□□□ -0.08
PTPRF-206ENST00000429895 RAB3AP20336 220 aa14.53□□□□□ -0.08
PTPRF-206ENST00000429895 CRABP1P29762 137 aa14.53□□□□□ -0.08
PTPRF-206ENST00000429895 CSNK1A1P48729 337 aa14.53□□□□□ -0.08
PTPRF-206ENST00000429895 SF3B4Q15427 424 aaKnown RBP eCLIP14.53□□□□□ -0.087e-8■■■□□ 18.5
PTPRF-206ENST00000429895 PIP5KL1Q5T9C9 394 aa14.53□□□□□ -0.08
PTPRF-206ENST00000429895 VWA5B2Q8N398 1253 aa14.53□□□□□ -0.08
PTPRF-206ENST00000429895 ZNF808Q8N4W9 903 aaPredicted RBP14.53□□□□□ -0.08
PTPRF-206ENST00000429895 TXNDC15Q96J42 360 aa14.53□□□□□ -0.08
PTPRF-206ENST00000429895 OBP2BQ9NPH6 170 aa14.53□□□□□ -0.08
PTPRF-206ENST00000429895 NENFQ9UMX5 172 aa14.53□□□□□ -0.08
PTPRF-206ENST00000429895 AK6Q9Y3D8 172 aaKnown RBP14.53□□□□□ -0.08
PTPRF-206ENST00000429895 LRRTM2O43300 516 aa14.53□□□□□ -0.08
PTPRF-206ENST00000429895 SMAD6O43541 496 aaKnown RBP14.53□□□□□ -0.08
PTPRF-206ENST00000429895 CYBAP13498 195 aa14.53□□□□□ -0.08
PTPRF-206ENST00000429895 DEFB103AP81534 67 aa14.53□□□□□ -0.08
PTPRF-206ENST00000429895 NADSYN1Q6IA69 706 aa14.53□□□□□ -0.08
PTPRF-206ENST00000429895 MAMDC4Q6UXC1 1216 aa14.53□□□□□ -0.08
PTPRF-206ENST00000429895 AMIGO3Q86WK7 504 aa14.53□□□□□ -0.08
PTPRF-206ENST00000429895 SCML4Q8N228 414 aa14.53□□□□□ -0.08
PTPRF-206ENST00000429895 MINDY1Q8N5J2 469 aa14.53□□□□□ -0.08
PTPRF-206ENST00000429895 KDM1BQ8NB78 822 aa14.53□□□□□ -0.08
PTPRF-206ENST00000429895 STK35Q8TDR2 534 aa14.53□□□□□ -0.08
PTPRF-206ENST00000429895 IGSF5Q9NSI5 407 aa14.53□□□□□ -0.08
PTPRF-206ENST00000429895 TMEM100Q9NV29 134 aa14.53□□□□□ -0.08
PTPRF-206ENST00000429895 CHRM4P08173 479 aa14.52□□□□□ -0.08
PTPRF-206ENST00000429895 CHMP24386 653 aa14.52□□□□□ -0.08
PTPRF-206ENST00000429895 ERVK-25P63136 954 aa14.52□□□□□ -0.08
PTPRF-206ENST00000429895 CEACAM7Q14002 265 aa14.52□□□□□ -0.08
PTPRF-206ENST00000429895 LETMD1Q6P1Q0 360 aa14.52□□□□□ -0.08
PTPRF-206ENST00000429895 TMEM184AQ6ZMB5 413 aa14.52□□□□□ -0.08
PTPRF-206ENST00000429895 CPOQ8IVL8 374 aa14.52□□□□□ -0.08
PTPRF-206ENST00000429895 MCATQ8IVS2 390 aaKnown RBP14.52□□□□□ -0.08
PTPRF-206ENST00000429895 CMTM1Q8IZ96 169 aa14.52□□□□□ -0.08
PTPRF-206ENST00000429895 LRRC15Q8TF66 581 aa14.52□□□□□ -0.08
PTPRF-206ENST00000429895 ALG8Q9BVK2 526 aa14.52□□□□□ -0.08
PTPRF-206ENST00000429895 ENKD1Q9H0I2 346 aa14.52□□□□□ -0.08
PTPRF-206ENST00000429895 HIF1ANQ9NWT6 349 aa14.52□□□□□ -0.08
PTPRF-206ENST00000429895 EFCAB7A8K855 629 aa14.52□□□□□ -0.08
PTPRF-206ENST00000429895 LTC4SQ16873 150 aa14.52□□□□□ -0.08
PTPRF-206ENST00000429895 GPR149Q86SP6 731 aa14.52□□□□□ -0.08
PTPRF-206ENST00000429895 LMO3Q8TAP4 145 aa14.52□□□□□ -0.08
PTPRF-206ENST00000429895 ATPIF1Q9UII2 106 aa14.52□□□□□ -0.08
PTPRF-206ENST00000429895 APOC3P02656 99 aa14.52□□□□□ -0.09
PTPRF-206ENST00000429895 SLC6A11P48066 632 aa14.52□□□□□ -0.09
PTPRF-206ENST00000429895 SEC61A1P61619 476 aaKnown RBP14.52□□□□□ -0.09
PTPRF-206ENST00000429895 TMEM135Q86UB9 458 aa14.52□□□□□ -0.09
PTPRF-206ENST00000429895 OR5W2Q8NH69 310 aa14.52□□□□□ -0.09
PTPRF-206ENST00000429895 ZNF420Q8TAQ5 688 aaPredicted RBP14.52□□□□□ -0.09
PTPRF-206ENST00000429895 NUDT22Q9BRQ3 303 aa14.52□□□□□ -0.09
PTPRF-206ENST00000429895 DMRT3Q9NQL9 472 aa14.52□□□□□ -0.09
PTPRF-206ENST00000429895 SERTAD4Q9NUC0 356 aa14.52□□□□□ -0.09
PTPRF-206ENST00000429895 RIMS3Q9UJD0 308 aa14.52□□□□□ -0.09
PTPRF-206ENST00000429895 ABCC6O95255 1503 aa14.52□□□□□ -0.09
PTPRF-206ENST00000429895 IFNA4P05014 189 aa14.52□□□□□ -0.09
PTPRF-206ENST00000429895 SLC45A3Q96JT2 553 aa14.52□□□□□ -0.09
PTPRF-206ENST00000429895 PBDC1Q9BVG4 233 aa14.52□□□□□ -0.09
PTPRF-206ENST00000429895 HAPLN2Q9GZV7 340 aa14.52□□□□□ -0.09
PTPRF-206ENST00000429895 CHRDQ9H2X0 955 aa14.52□□□□□ -0.09
PTPRF-206ENST00000429895 EBF1Q9UH73 591 aa14.52□□□□□ -0.09
PTPRF-206ENST00000429895 LTBP3Q9NS15 1303 aa14.52□□□□□ -0.09
PTPRF-206ENST00000429895 OSMP13725 252 aa14.52□□□□□ -0.09
PTPRF-206ENST00000429895 P2RY14Q15391 338 aa14.52□□□□□ -0.09
PTPRF-206ENST00000429895 DCST2Q5T1A1 773 aa14.52□□□□□ -0.09
PTPRF-206ENST00000429895 TAS1R1Q7RTX1 841 aa14.52□□□□□ -0.09
PTPRF-206ENST00000429895 KANSL1Q7Z3B3 1105 aa14.52□□□□□ -0.09
PTPRF-206ENST00000429895 CDRT4Q8N9R6 151 aa14.52□□□□□ -0.09
PTPRF-206ENST00000429895 OR51Q1Q8NH59 317 aa14.52□□□□□ -0.09
PTPRF-206ENST00000429895 PCDHA9Q9Y5H5 950 aa14.52□□□□□ -0.09
PTPRF-206ENST00000429895 PRKYO43930 277 aa14.51□□□□□ -0.09
PTPRF-206ENST00000429895 SNAPC5O75971 98 aa14.51□□□□□ -0.09
PTPRF-206ENST00000429895 SLC6A8P48029 635 aa14.51□□□□□ -0.09
PTPRF-206ENST00000429895 PDZD3Q86UT5 571 aa14.51□□□□□ -0.09
PTPRF-206ENST00000429895 SFXN5Q8TD22 340 aa14.51□□□□□ -0.09
PTPRF-206ENST00000429895 DCUN1D4Q92564 292 aa14.51□□□□□ -0.09
PTPRF-206ENST00000429895 PPIL3Q9H2H8 161 aaKnown RBP14.51□□□□□ -0.09
PTPRF-206ENST00000429895 HEBP1Q9NRV9 189 aa14.51□□□□□ -0.09
PTPRF-206ENST00000429895 A6NIZ1 184 aa14.51□□□□□ -0.09
PTPRF-206ENST00000429895 CX3CR1P49238 355 aa14.51□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 79.6 ms