RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 KLRC4-KLRK1H3BQV0 150 aa6.5□□□□□ -1.37
SCN1A-204ENST00000423058 TK1P04183 234 aa6.5□□□□□ -1.37
SCN1A-204ENST00000423058 FUT4P22083 530 aa6.5□□□□□ -1.37
SCN1A-204ENST00000423058 CPOXP36551 454 aa6.5□□□□□ -1.37
SCN1A-204ENST00000423058 CD79BP40259 229 aa6.5□□□□□ -1.37
SCN1A-204ENST00000423058 AGTR2P50052 363 aa6.5□□□□□ -1.37
SCN1A-204ENST00000423058 ADARB1P78563 741 aaKnown RBP6.5□□□□□ -1.37
SCN1A-204ENST00000423058 SF3A2Q15428 464 aaKnown RBP6.5□□□□□ -1.37
SCN1A-204ENST00000423058 OR8B8Q15620 311 aa6.5□□□□□ -1.37
SCN1A-204ENST00000423058 PAN3Q58A45 887 aaKnown RBP6.5□□□□□ -1.37
SCN1A-204ENST00000423058 LIPKQ5VXJ0 399 aa6.5□□□□□ -1.37
SCN1A-204ENST00000423058 TSPAN33Q86UF1 283 aa6.5□□□□□ -1.37
SCN1A-204ENST00000423058 CNTN4Q8IWV2 1026 aa6.5□□□□□ -1.37
SCN1A-204ENST00000423058 FRZBQ92765 325 aa6.5□□□□□ -1.37
SCN1A-204ENST00000423058 SDSLQ96GA7 329 aa6.5□□□□□ -1.37
SCN1A-204ENST00000423058 PREBQ9HCU5 417 aa6.5□□□□□ -1.37
SCN1A-204ENST00000423058 RBPJLQ9UBG7 517 aa6.5□□□□□ -1.37
SCN1A-204ENST00000423058 C10orf71Q711Q0 1435 aa6.5□□□□□ -1.37
SCN1A-204ENST00000423058 ABCC6O95255 1503 aa6.5□□□□□ -1.37
SCN1A-204ENST00000423058 ZBTB22O15209 634 aa6.5□□□□□ -1.37
SCN1A-204ENST00000423058 MED6O75586 246 aa6.5□□□□□ -1.37
SCN1A-204ENST00000423058 ZNF182P17025 639 aaPredicted RBP6.5□□□□□ -1.37
SCN1A-204ENST00000423058 BMI1P35226 326 aa6.5□□□□□ -1.37
SCN1A-204ENST00000423058 ACVR1BP36896 505 aa6.5□□□□□ -1.37
SCN1A-204ENST00000423058 GDF5P43026 501 aa6.5□□□□□ -1.37
SCN1A-204ENST00000423058 OR1E2P47887 323 aa6.5□□□□□ -1.37
SCN1A-204ENST00000423058 UBE2G2P60604 165 aa6.5□□□□□ -1.37
SCN1A-204ENST00000423058 EIF2B1Q14232 305 aaKnown RBP6.5□□□□□ -1.37
SCN1A-204ENST00000423058 SLC14A2Q15849 920 aa6.5□□□□□ -1.37
SCN1A-204ENST00000423058 SPANXN4Q5MJ08 99 aa6.5□□□□□ -1.37
SCN1A-204ENST00000423058 ZNF678Q5SXM1 525 aa6.5□□□□□ -1.37
SCN1A-204ENST00000423058 FAM182AQ5T1J6 154 aa6.5□□□□□ -1.37
SCN1A-204ENST00000423058 Q6ZVL8 140 aa6.5□□□□□ -1.37
SCN1A-204ENST00000423058 ANKLE1Q8NAG6 615 aa6.5□□□□□ -1.37
SCN1A-204ENST00000423058 ZNF420Q8TAQ5 688 aaPredicted RBP6.5□□□□□ -1.37
SCN1A-204ENST00000423058 TSSK2Q96PF2 358 aa6.5□□□□□ -1.37
SCN1A-204ENST00000423058 BCL7BQ9BQE9 202 aa6.5□□□□□ -1.37
SCN1A-204ENST00000423058 ACTR10Q9NZ32 417 aa6.5□□□□□ -1.37
SCN1A-204ENST00000423058 TRBV11-1A0A0K0K1C0 115 aa6.49□□□□□ -1.37
SCN1A-204ENST00000423058 FAM159BA6NKW6 160 aa6.49□□□□□ -1.37
SCN1A-204ENST00000423058 F6UZH7 168 aa6.49□□□□□ -1.37
SCN1A-204ENST00000423058 H0YAE9 185 aa6.49□□□□□ -1.37
SCN1A-204ENST00000423058 H7C1Q1 480 aa6.49□□□□□ -1.37
SCN1A-204ENST00000423058 TULP2O00295 520 aa6.49□□□□□ -1.37
SCN1A-204ENST00000423058 KIAA0355O15063 1070 aa6.49□□□□□ -1.37
SCN1A-204ENST00000423058 ARHGEF15O94989 841 aa6.49□□□□□ -1.37
SCN1A-204ENST00000423058 IGHG1P01857 330 aa6.49□□□□□ -1.37
SCN1A-204ENST00000423058 GSK3BP49841 420 aa6.49□□□□□ -1.37
SCN1A-204ENST00000423058 MEF2DQ14814 521 aa6.49□□□□□ -1.37
SCN1A-204ENST00000423058 CES4AQ5XG92 561 aa6.49□□□□□ -1.37
SCN1A-204ENST00000423058 VHLLQ6RSH7 139 aa6.49□□□□□ -1.37
SCN1A-204ENST00000423058 SLC7A13Q8TCU3 470 aa6.49□□□□□ -1.37
SCN1A-204ENST00000423058 FAM46AQ96IP4 442 aaKnown RBP6.49□□□□□ -1.37
SCN1A-204ENST00000423058 MAELQ96JY0 434 aaKnown RBP6.49□□□□□ -1.37
SCN1A-204ENST00000423058 NKX3-1Q99801 234 aaPredicted RBP6.49□□□□□ -1.37
SCN1A-204ENST00000423058 OR51B6Q9H340 312 aa6.49□□□□□ -1.37
SCN1A-204ENST00000423058 OR2S2Q9NQN1 319 aa6.49□□□□□ -1.37
SCN1A-204ENST00000423058 KLHL9Q9P2J3 617 aa6.49□□□□□ -1.37
SCN1A-204ENST00000423058 SIT1Q9Y3P8 196 aa6.49□□□□□ -1.37
SCN1A-204ENST00000423058 CEBPZOSA8MTT3 80 aa6.49□□□□□ -1.37
SCN1A-204ENST00000423058 AHSGP02765 367 aa6.49□□□□□ -1.37
SCN1A-204ENST00000423058 NPBWR1P48145 328 aa6.49□□□□□ -1.37
SCN1A-204ENST00000423058 PPP5CP53041 499 aa6.49□□□□□ -1.37
SCN1A-204ENST00000423058 TAS2R30P59541 319 aa6.49□□□□□ -1.37
SCN1A-204ENST00000423058 NKX6-1P78426 367 aaPredicted RBP6.49□□□□□ -1.37
SCN1A-204ENST00000423058 CHRNEQ04844 493 aa6.49□□□□□ -1.37
SCN1A-204ENST00000423058 INCA1Q0VD86 236 aa6.49□□□□□ -1.37
SCN1A-204ENST00000423058 QPCTQ16769 361 aa6.49□□□□□ -1.37
SCN1A-204ENST00000423058 SFRP5Q5T4F7 317 aa6.49□□□□□ -1.37
SCN1A-204ENST00000423058 EPGNQ6UW88 154 aa6.49□□□□□ -1.37
SCN1A-204ENST00000423058 SLC46A3Q7Z3Q1 461 aa6.49□□□□□ -1.37
SCN1A-204ENST00000423058 CHFRQ96EP1 664 aa6.49□□□□□ -1.37
SCN1A-204ENST00000423058 SLC41A3Q96GZ6 507 aa6.49□□□□□ -1.37
SCN1A-204ENST00000423058 PITHD1Q9GZP4 211 aaPredicted RBP6.49□□□□□ -1.37
SCN1A-204ENST00000423058 TWSG1Q9GZX9 223 aa6.49□□□□□ -1.37
SCN1A-204ENST00000423058 FOLH1BQ9HBA9 442 aa6.49□□□□□ -1.37
SCN1A-204ENST00000423058 SLC39A9Q9NUM3 307 aa6.49□□□□□ -1.37
SCN1A-204ENST00000423058 TMEM45AQ9NWC5 275 aa6.49□□□□□ -1.37
SCN1A-204ENST00000423058 PISDQ9UG56 409 aa6.49□□□□□ -1.37
SCN1A-204ENST00000423058 NME7Q9Y5B8 376 aa6.49□□□□□ -1.37
SCN1A-204ENST00000423058 TDRD6O60522 2096 aaKnown RBP6.49□□□□□ -1.37
SCN1A-204ENST00000423058 RFPL1O75677 317 aa6.49□□□□□ -1.37
SCN1A-204ENST00000423058 F2P00734 622 aa6.49□□□□□ -1.37
SCN1A-204ENST00000423058 CRYBA1P05813 215 aa6.49□□□□□ -1.37
SCN1A-204ENST00000423058 BDKRB2P30411 391 aa6.49□□□□□ -1.37
SCN1A-204ENST00000423058 IDH3GP51553 393 aaPredicted RBP6.49□□□□□ -1.37
SCN1A-204ENST00000423058 SCAPQ12770 1279 aa6.49□□□□□ -1.37
SCN1A-204ENST00000423058 SLC36A2Q495M3 483 aa6.49□□□□□ -1.37
SCN1A-204ENST00000423058 DCST2Q5T1A1 773 aa6.49□□□□□ -1.37
SCN1A-204ENST00000423058 TMEM150AQ86TG1 271 aa6.49□□□□□ -1.37
SCN1A-204ENST00000423058 CACNG4Q9UBN1 327 aa6.49□□□□□ -1.37
SCN1A-204ENST00000423058 B3GNT3Q9Y2A9 372 aa6.49□□□□□ -1.37
SCN1A-204ENST00000423058 DDX60Q8IY21 1712 aaKnown RBP6.49□□□□□ -1.37
SCN1A-204ENST00000423058 NFKBIEO00221 500 aa6.49□□□□□ -1.37
SCN1A-204ENST00000423058 SCAMP2O15127 329 aaKnown RBP6.49□□□□□ -1.37
SCN1A-204ENST00000423058 SLC43A1O75387 559 aa6.49□□□□□ -1.37
SCN1A-204ENST00000423058 CBX7O95931 251 aa6.49□□□□□ -1.37
SCN1A-204ENST00000423058 CHRM4P08173 479 aa6.49□□□□□ -1.37
SCN1A-204ENST00000423058 IL2RGP31785 369 aa6.49□□□□□ -1.37
SCN1A-204ENST00000423058 ETV5P41161 510 aa6.49□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms