RNA–Protein interactions for RNA: ENST00000414879.5

PTPRF-205, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,836 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-205ENST00000414879 ZNF597Q96LX8 424 aa11.24□□□□□ -0.61
PTPRF-205ENST00000414879 GPR78Q96P69 363 aa11.24□□□□□ -0.61
PTPRF-205ENST00000414879 SMIM14Q96QK8 99 aa11.24□□□□□ -0.61
PTPRF-205ENST00000414879 LRRN3Q9H3W5 708 aa11.24□□□□□ -0.61
PTPRF-205ENST00000414879 ZNF639Q9UID6 485 aa11.24□□□□□ -0.61
PTPRF-205ENST00000414879 MCTS1Q9ULC4 181 aaKnown RBP11.24□□□□□ -0.61
PTPRF-205ENST00000414879 HOXC4P09017 264 aaPredicted RBP11.24□□□□□ -0.61
PTPRF-205ENST00000414879 PRKAR1BP31321 381 aa11.24□□□□□ -0.61
PTPRF-205ENST00000414879 GGT2P36268 569 aa11.24□□□□□ -0.61
PTPRF-205ENST00000414879 MS4A2Q01362 244 aa11.24□□□□□ -0.61
PTPRF-205ENST00000414879 TLE3Q04726 772 aa11.24□□□□□ -0.61
PTPRF-205ENST00000414879 NNATQ16517 81 aa11.24□□□□□ -0.61
PTPRF-205ENST00000414879 SLC6A19Q695T7 634 aa11.24□□□□□ -0.61
PTPRF-205ENST00000414879 SYT13Q7L8C5 426 aa11.24□□□□□ -0.61
PTPRF-205ENST00000414879 MAL2Q969L2 176 aa11.24□□□□□ -0.61
PTPRF-205ENST00000414879 STACQ99469 402 aa11.24□□□□□ -0.61
PTPRF-205ENST00000414879 SLC30A3Q99726 388 aa11.24□□□□□ -0.61
PTPRF-205ENST00000414879 EMC3Q9P0I2 261 aa11.24□□□□□ -0.61
PTPRF-205ENST00000414879 BRCA1P38398 1863 aaKnown RBP11.24□□□□□ -0.61
PTPRF-205ENST00000414879 H3BSA7 217 aa11.24□□□□□ -0.61
PTPRF-205ENST00000414879 PCDH17O14917 1159 aa11.24□□□□□ -0.61
PTPRF-205ENST00000414879 RBMXL2O75526 392 aaKnown RBP11.24□□□□□ -0.61
PTPRF-205ENST00000414879 IFNA21P01568 189 aa11.24□□□□□ -0.61
PTPRF-205ENST00000414879 CSNK1EP49674 416 aaKnown RBP11.24□□□□□ -0.61
PTPRF-205ENST00000414879 HBA1P69905 142 aa11.24□□□□□ -0.61
PTPRF-205ENST00000414879 SGCAQ16586 387 aa11.24□□□□□ -0.61
PTPRF-205ENST00000414879 C6orf132Q5T0Z8 1188 aa11.24□□□□□ -0.61
PTPRF-205ENST00000414879 FAM71E1Q6IPT2 247 aa11.24□□□□□ -0.61
PTPRF-205ENST00000414879 FAM217AQ8IXS0 508 aa11.24□□□□□ -0.61
PTPRF-205ENST00000414879 PELI3Q8N2H9 469 aa11.24□□□□□ -0.61
PTPRF-205ENST00000414879 EID2Q8N6I1 236 aa11.24□□□□□ -0.61
PTPRF-205ENST00000414879 HTRA1Q92743 480 aa11.24□□□□□ -0.61
PTPRF-205ENST00000414879 FER1L6-AS2Q96M78 137 aa11.24□□□□□ -0.61
PTPRF-205ENST00000414879 SGPP1Q9BX95 441 aa11.24□□□□□ -0.61
PTPRF-205ENST00000414879 TEX101Q9BY14 249 aa11.24□□□□□ -0.61
PTPRF-205ENST00000414879 PAK1IP1Q9NWT1 392 aaPredicted RBP11.24□□□□□ -0.61
PTPRF-205ENST00000414879 SPHK1Q9NYA1 384 aa11.24□□□□□ -0.61
PTPRF-205ENST00000414879 EME2A4GXA9 379 aaPredicted RBP11.23□□□□□ -0.61
PTPRF-205ENST00000414879 SOCS2O14508 198 aa11.23□□□□□ -0.61
PTPRF-205ENST00000414879 TAPBPO15533 448 aa11.23□□□□□ -0.61
PTPRF-205ENST00000414879 TPD52L2O43399 206 aaKnown RBP11.23□□□□□ -0.61
PTPRF-205ENST00000414879 MSX1P28360 303 aa11.23□□□□□ -0.61
PTPRF-205ENST00000414879 CNR2P34972 360 aa11.23□□□□□ -0.61
PTPRF-205ENST00000414879 PXNP49023 591 aaPredicted RBP11.23□□□□□ -0.61
PTPRF-205ENST00000414879 KCNJ10P78508 379 aa11.23□□□□□ -0.61
PTPRF-205ENST00000414879 CBX3Q13185 183 aa11.23□□□□□ -0.61
PTPRF-205ENST00000414879 KCTD20Q7Z5Y7 419 aa11.23□□□□□ -0.61
PTPRF-205ENST00000414879 OR1E3Q8WZA6 343 aa11.23□□□□□ -0.61
PTPRF-205ENST00000414879 WNT16Q9UBV4 365 aa11.23□□□□□ -0.61
PTPRF-205ENST00000414879 A0A1B0GVT2 93 aa11.23□□□□□ -0.61
PTPRF-205ENST00000414879 A0A1W2PPC4 97 aa11.23□□□□□ -0.61
PTPRF-205ENST00000414879 GPR39O43194 453 aa11.23□□□□□ -0.61
PTPRF-205ENST00000414879 FUT1P19526 365 aa11.23□□□□□ -0.61
PTPRF-205ENST00000414879 LCN1P31025 176 aa11.23□□□□□ -0.61
PTPRF-205ENST00000414879 UGT2B10P36537 528 aa11.23□□□□□ -0.61
PTPRF-205ENST00000414879 EPHA4P54764 986 aa11.23□□□□□ -0.61
PTPRF-205ENST00000414879 EXT1Q16394 746 aa11.23□□□□□ -0.61
PTPRF-205ENST00000414879 CDKN3Q16667 212 aa11.23□□□□□ -0.61
PTPRF-205ENST00000414879 CYP27C1Q4G0S4 372 aa11.23□□□□□ -0.61
PTPRF-205ENST00000414879 OLFML2AQ68BL7 652 aa11.23□□□□□ -0.61
PTPRF-205ENST00000414879 GHDCQ8N2G8 530 aa11.23□□□□□ -0.61
PTPRF-205ENST00000414879 ANKK1Q8NFD2 765 aa11.23□□□□□ -0.61
PTPRF-205ENST00000414879 SNIP1Q8TAD8 396 aaKnown RBP11.23□□□□□ -0.61
PTPRF-205ENST00000414879 HOXB13Q92826 284 aaPredicted RBP11.23□□□□□ -0.61
PTPRF-205ENST00000414879 CDS1Q92903 461 aa11.23□□□□□ -0.61
PTPRF-205ENST00000414879 PGAM5Q96HS1 289 aa11.23□□□□□ -0.61
PTPRF-205ENST00000414879 FAM46AQ96IP4 442 aaKnown RBP11.23□□□□□ -0.61
PTPRF-205ENST00000414879 SFXN2Q96NB2 322 aa11.23□□□□□ -0.61
PTPRF-205ENST00000414879 TRPV4Q9HBA0 871 aa11.23□□□□□ -0.61
PTPRF-205ENST00000414879 SLC7A7Q9UM01 511 aa11.23□□□□□ -0.61
PTPRF-205ENST00000414879 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP11.23□□□□□ -0.61
PTPRF-205ENST00000414879 FAM25EA8MYX2 175 aa11.23□□□□□ -0.61
PTPRF-205ENST00000414879 GPX2P18283 190 aa11.23□□□□□ -0.61
PTPRF-205ENST00000414879 AZGP1P25311 298 aaKnown RBP11.23□□□□□ -0.61
PTPRF-205ENST00000414879 GPR4P46093 362 aa11.23□□□□□ -0.61
PTPRF-205ENST00000414879 LAPTM4AQ15012 233 aa11.23□□□□□ -0.61
PTPRF-205ENST00000414879 HMBOX1Q6NT76 420 aa11.23□□□□□ -0.61
PTPRF-205ENST00000414879 OR52E2Q8NGJ4 325 aa11.23□□□□□ -0.61
PTPRF-205ENST00000414879 OR9A4Q8NGU2 314 aa11.23□□□□□ -0.61
PTPRF-205ENST00000414879 ZFP90Q8TF47 636 aa11.23□□□□□ -0.61
PTPRF-205ENST00000414879 ZFAND2BQ8WV99 257 aa11.23□□□□□ -0.61
PTPRF-205ENST00000414879 SPTSSAQ969W0 71 aa11.23□□□□□ -0.61
PTPRF-205ENST00000414879 FGF21Q9NSA1 209 aa11.23□□□□□ -0.61
PTPRF-205ENST00000414879 CIB4A0PJX0 185 aa11.23□□□□□ -0.61
PTPRF-205ENST00000414879 PPP6CO00743 305 aa11.23□□□□□ -0.61
PTPRF-205ENST00000414879 SEC14L5O43304 696 aa11.23□□□□□ -0.61
PTPRF-205ENST00000414879 PSMB5P28074 263 aa11.23□□□□□ -0.61
PTPRF-205ENST00000414879 PDE7AQ13946 482 aa11.23□□□□□ -0.61
PTPRF-205ENST00000414879 OCLNQ16625 522 aa11.23□□□□□ -0.61
PTPRF-205ENST00000414879 THOC7Q6I9Y2 204 aaKnown RBP11.23□□□□□ -0.61
PTPRF-205ENST00000414879 CADM4Q8NFZ8 388 aa11.23□□□□□ -0.61
PTPRF-205ENST00000414879 CNIH3Q8TBE1 160 aa11.23□□□□□ -0.61
PTPRF-205ENST00000414879 THAP3Q8WTV1 239 aaPredicted RBP11.23□□□□□ -0.61
PTPRF-205ENST00000414879 CREB3L1Q96BA8 519 aa11.23□□□□□ -0.61
PTPRF-205ENST00000414879 ISOC1Q96CN7 298 aa11.23□□□□□ -0.61
PTPRF-205ENST00000414879 SLC22A7Q9Y694 548 aa11.23□□□□□ -0.61
PTPRF-205ENST00000414879 CDC40O60508 579 aaKnown RBP eCLIP11.22□□□□□ -0.61
PTPRF-205ENST00000414879 IDUAP35475 653 aa11.22□□□□□ -0.61
PTPRF-205ENST00000414879 GNG2P59768 71 aa11.22□□□□□ -0.61
PTPRF-205ENST00000414879 GLO1Q04760 184 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms