RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 SIX2Q9NPC8 291 aa12.24□□□□□ -0.45
COL6A3-206ENST00000409809 SARDHQ9UL12 918 aa12.24□□□□□ -0.45
COL6A3-206ENST00000409809 NOX1Q9Y5S8 564 aa12.24□□□□□ -0.45
COL6A3-206ENST00000409809 ARGFXA6NJG6 315 aa12.23□□□□□ -0.45
COL6A3-206ENST00000409809 TP53I11O14683 189 aa12.23□□□□□ -0.45
COL6A3-206ENST00000409809 FGF7P21781 194 aa12.23□□□□□ -0.45
COL6A3-206ENST00000409809 OR6N2Q8NGY6 317 aa12.23□□□□□ -0.45
COL6A3-206ENST00000409809 WFIKKN2Q8TEU8 576 aa12.23□□□□□ -0.45
COL6A3-206ENST00000409809 A8MX80 341 aa12.23□□□□□ -0.45
COL6A3-206ENST00000409809 NLE1Q9NVX2 485 aaPredicted RBP12.23□□□□□ -0.45
COL6A3-206ENST00000409809 A0A1B0GVG6 124 aa12.23□□□□□ -0.45
COL6A3-206ENST00000409809 TISP43B9A030 160 aa12.23□□□□□ -0.45
COL6A3-206ENST00000409809 FUT2Q10981 343 aa12.23□□□□□ -0.45
COL6A3-206ENST00000409809 SYT6Q5T7P8 510 aaPredicted RBP12.23□□□□□ -0.45
COL6A3-206ENST00000409809 SFRP4Q6FHJ7 346 aaPredicted RBP12.23□□□□□ -0.45
COL6A3-206ENST00000409809 HEPHL1Q6MZM0 1159 aa12.23□□□□□ -0.45
COL6A3-206ENST00000409809 KIAA0319LQ8IZA0 1049 aa12.23□□□□□ -0.45
COL6A3-206ENST00000409809 DUSP19Q8WTR2 217 aa12.23□□□□□ -0.45
COL6A3-206ENST00000409809 SIGLEC10Q96LC7 697 aa12.23□□□□□ -0.45
COL6A3-206ENST00000409809 PAPOLGQ9BWT3 736 aaKnown RBP12.23□□□□□ -0.45
COL6A3-206ENST00000409809 ZNF780AO75290 641 aaPredicted RBP12.23□□□□□ -0.45
COL6A3-206ENST00000409809 NFATC1O95644 943 aa12.23□□□□□ -0.45
COL6A3-206ENST00000409809 UBL4AP11441 157 aa12.23□□□□□ -0.45
COL6A3-206ENST00000409809 ATP1B2P14415 290 aaPredicted RBP12.23□□□□□ -0.45
COL6A3-206ENST00000409809 INHBCP55103 352 aa12.23□□□□□ -0.45
COL6A3-206ENST00000409809 FLYWCH1Q4VC44 716 aa12.23□□□□□ -0.45
COL6A3-206ENST00000409809 PDZD3Q86UT5 571 aa12.23□□□□□ -0.45
COL6A3-206ENST00000409809 NAA40Q86UY6 237 aa12.23□□□□□ -0.45
COL6A3-206ENST00000409809 CPA6Q8N4T0 437 aa12.23□□□□□ -0.45
COL6A3-206ENST00000409809 LINC00116Q8NCU8 138 aa12.23□□□□□ -0.45
COL6A3-206ENST00000409809 SYNPRQ8TBG9 265 aa12.23□□□□□ -0.45
COL6A3-206ENST00000409809 GAL3ST4Q96RP7 486 aa12.23□□□□□ -0.45
COL6A3-206ENST00000409809 SOX17Q9H6I2 414 aaPredicted RBP12.23□□□□□ -0.45
COL6A3-206ENST00000409809 C19orf25Q9UFG5 118 aaPredicted RBP12.23□□□□□ -0.45
COL6A3-206ENST00000409809 GMEB2Q9UKD1 530 aa12.23□□□□□ -0.45
COL6A3-206ENST00000409809 MTMR11A4FU01 709 aa12.23□□□□□ -0.45
COL6A3-206ENST00000409809 METTL15A6NJ78 407 aa12.23□□□□□ -0.45
COL6A3-206ENST00000409809 MSTNO14793 375 aa12.23□□□□□ -0.45
COL6A3-206ENST00000409809 EMC8O43402 210 aa12.23□□□□□ -0.45
COL6A3-206ENST00000409809 CORO1AP31146 461 aaKnown RBP12.23□□□□□ -0.45
COL6A3-206ENST00000409809 POU6F2P78424 691 aaPredicted RBP12.23□□□□□ -0.45
COL6A3-206ENST00000409809 PLP2Q04941 152 aa12.23□□□□□ -0.45
COL6A3-206ENST00000409809 ZNF439Q8NDP4 499 aa12.23□□□□□ -0.45
COL6A3-206ENST00000409809 OR51L1Q8NGJ5 315 aa12.23□□□□□ -0.45
COL6A3-206ENST00000409809 SLC25A44Q96H78 314 aaPredicted RBP12.23□□□□□ -0.45
COL6A3-206ENST00000409809 WRAP53Q9BUR4 548 aaKnown RBP12.23□□□□□ -0.45
COL6A3-206ENST00000409809 SCN3AQ9NY46 2000 aa12.23□□□□□ -0.45
COL6A3-206ENST00000409809 BCL9O00512 1426 aa12.23□□□□□ -0.45
COL6A3-206ENST00000409809 YY2O15391 372 aa12.23□□□□□ -0.45
COL6A3-206ENST00000409809 SULT1A2P50226 295 aa12.23□□□□□ -0.45
COL6A3-206ENST00000409809 BRICD5Q6PL45 260 aa12.23□□□□□ -0.45
COL6A3-206ENST00000409809 OR5M8Q8NGP6 311 aa12.23□□□□□ -0.45
COL6A3-206ENST00000409809 WDR18Q9BV38 432 aa12.23□□□□□ -0.45
COL6A3-206ENST00000409809 THSD1Q9NS62 852 aa12.23□□□□□ -0.45
COL6A3-206ENST00000409809 CAMK2AQ9UQM7 478 aa12.23□□□□□ -0.45
COL6A3-206ENST00000409809 SCN2AQ99250 2005 aa12.23□□□□□ -0.45
COL6A3-206ENST00000409809 A0A1W2PPV4 95 aa12.23□□□□□ -0.45
COL6A3-206ENST00000409809 M0R2N6 131 aa12.23□□□□□ -0.45
COL6A3-206ENST00000409809 HLA-DQB2P05538 268 aa12.23□□□□□ -0.45
COL6A3-206ENST00000409809 KITLGP21583 273 aa12.23□□□□□ -0.45
COL6A3-206ENST00000409809 BCKDHBP21953 392 aa12.23□□□□□ -0.45
COL6A3-206ENST00000409809 IL34Q6ZMJ4 242 aa12.23□□□□□ -0.45
COL6A3-206ENST00000409809 ERN2Q76MJ5 926 aaKnown RBP12.23□□□□□ -0.45
COL6A3-206ENST00000409809 LDAHQ9H6V9 325 aa12.23□□□□□ -0.45
COL6A3-206ENST00000409809 CRTAC1Q9NQ79 661 aa12.23□□□□□ -0.45
COL6A3-206ENST00000409809 A0A1W2PQH9 124 aa12.22□□□□□ -0.45
COL6A3-206ENST00000409809 A8MVM7 634 aa12.22□□□□□ -0.45
COL6A3-206ENST00000409809 ZBTB7AO95365 584 aa12.22□□□□□ -0.45
COL6A3-206ENST00000409809 C6orf47O95873 294 aa12.22□□□□□ -0.45
COL6A3-206ENST00000409809 SIRPB2Q5JXA9 342 aa12.22□□□□□ -0.45
COL6A3-206ENST00000409809 NPAS4Q8IUM7 802 aa12.22□□□□□ -0.45
COL6A3-206ENST00000409809 OR5D14Q8NGL3 314 aa12.22□□□□□ -0.45
COL6A3-206ENST00000409809 ACER1Q8TDN7 264 aa12.22□□□□□ -0.45
COL6A3-206ENST00000409809 MMP3P08254 477 aa12.22□□□□□ -0.45
COL6A3-206ENST00000409809 ACP2P11117 423 aa12.22□□□□□ -0.45
COL6A3-206ENST00000409809 PSMB3P49720 205 aa12.22□□□□□ -0.45
COL6A3-206ENST00000409809 PLK5Q496M5 336 aa12.22□□□□□ -0.45
COL6A3-206ENST00000409809 FAM110BQ8TC76 370 aa12.22□□□□□ -0.45
COL6A3-206ENST00000409809 ZNF681Q96N22 645 aa12.22□□□□□ -0.45
COL6A3-206ENST00000409809 A0A1B0GVT2 93 aa12.22□□□□□ -0.45
COL6A3-206ENST00000409809 TRIM77I1YAP6 450 aa12.22□□□□□ -0.45
COL6A3-206ENST00000409809 PNMTP11086 282 aa12.22□□□□□ -0.45
COL6A3-206ENST00000409809 TMEM183BQ1AE95 376 aa12.22□□□□□ -0.45
COL6A3-206ENST00000409809 NCBP2-AS2Q69YL0 99 aa12.22□□□□□ -0.45
COL6A3-206ENST00000409809 SIGLECL1Q8N7X8 197 aa12.22□□□□□ -0.45
COL6A3-206ENST00000409809 SPTSSAQ969W0 71 aa12.22□□□□□ -0.45
COL6A3-206ENST00000409809 FGGYQ96C11 551 aa12.22□□□□□ -0.45
COL6A3-206ENST00000409809 COL5A2P05997 1499 aaPredicted RBP12.22□□□□□ -0.45
COL6A3-206ENST00000409809 SCAMP2O15127 329 aaKnown RBP12.22□□□□□ -0.45
COL6A3-206ENST00000409809 HPGDSO60760 199 aa12.22□□□□□ -0.45
COL6A3-206ENST00000409809 HOXD13P35453 343 aa12.22□□□□□ -0.45
COL6A3-206ENST00000409809 RFX2P48378 723 aa12.22□□□□□ -0.45
COL6A3-206ENST00000409809 YIF1BQ5BJH7 314 aa12.22□□□□□ -0.45
COL6A3-206ENST00000409809 INTS5Q6P9B9 1019 aaKnown RBP12.22□□□□□ -0.45
COL6A3-206ENST00000409809 LYSMD2Q8IV50 215 aa12.22□□□□□ -0.45
COL6A3-206ENST00000409809 SMOC2Q9H3U7 446 aa12.22□□□□□ -0.45
COL6A3-206ENST00000409809 LSM5Q9Y4Y9 91 aaKnown RBP12.22□□□□□ -0.45
COL6A3-206ENST00000409809 BCL9LQ86UU0 1499 aa12.22□□□□□ -0.45
COL6A3-206ENST00000409809 OLFM2O95897 454 aa12.22□□□□□ -0.45
COL6A3-206ENST00000409809 MMP2P08253 660 aa12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 76.7 ms