RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 C17orf105B2RV13 164 aa12.44□□□□□ -0.42
LIMS1-204ENST00000409441 PEX12O00623 359 aa12.44□□□□□ -0.42
LIMS1-204ENST00000409441 MRPS14O60783 128 aaKnown RBP12.44□□□□□ -0.42
LIMS1-204ENST00000409441 PDE9AO76083 593 aa12.44□□□□□ -0.42
LIMS1-204ENST00000409441 GALNSP34059 522 aa12.44□□□□□ -0.42
LIMS1-204ENST00000409441 CLK3P49761 638 aaKnown RBP12.44□□□□□ -0.42
LIMS1-204ENST00000409441 IL5RAQ01344 420 aa12.44□□□□□ -0.42
LIMS1-204ENST00000409441 RAPSNQ13702 412 aa12.44□□□□□ -0.42
LIMS1-204ENST00000409441 LAIR2Q6ISS4 152 aa12.44□□□□□ -0.42
LIMS1-204ENST00000409441 LRRC69Q6ZNQ3 347 aa12.44□□□□□ -0.42
LIMS1-204ENST00000409441 NDUFAF7Q7L592 441 aa12.44□□□□□ -0.42
LIMS1-204ENST00000409441 TSEN54Q7Z6J9 526 aaKnown RBP12.44□□□□□ -0.42
LIMS1-204ENST00000409441 GALNT5Q7Z7M9 940 aa12.44□□□□□ -0.42
LIMS1-204ENST00000409441 MRGPREQ86SM8 312 aa12.44□□□□□ -0.42
LIMS1-204ENST00000409441 TSPYL5Q86VY4 417 aaPredicted RBP12.44□□□□□ -0.42
LIMS1-204ENST00000409441 OR9A2Q8NGT5 310 aa12.44□□□□□ -0.42
LIMS1-204ENST00000409441 IP6K3Q96PC2 410 aa12.44□□□□□ -0.42
LIMS1-204ENST00000409441 LPAR4Q99677 370 aa12.44□□□□□ -0.42
LIMS1-204ENST00000409441 WDR77Q9BQA1 342 aaPredicted RBP12.44□□□□□ -0.42
LIMS1-204ENST00000409441 ZNF700Q9H0M5 742 aa12.44□□□□□ -0.42
LIMS1-204ENST00000409441 SIRT3Q9NTG7 399 aaPredicted RBP12.44□□□□□ -0.42
LIMS1-204ENST00000409441 P4HTMQ9NXG6 502 aa12.44□□□□□ -0.42
LIMS1-204ENST00000409441 TPRKBQ9Y3C4 175 aa12.44□□□□□ -0.42
LIMS1-204ENST00000409441 GMPPBQ9Y5P6 360 aa12.44□□□□□ -0.42
LIMS1-204ENST00000409441 SNX8Q9Y5X2 465 aa12.44□□□□□ -0.42
LIMS1-204ENST00000409441 SNX5Q9Y5X3 404 aa12.44□□□□□ -0.42
LIMS1-204ENST00000409441 IGHV1-45A0A0A0MS14 117 aa12.44□□□□□ -0.42
LIMS1-204ENST00000409441 A0A1W2PQ72 361 aa12.44□□□□□ -0.42
LIMS1-204ENST00000409441 ZNF891A8MT65 544 aaPredicted RBP12.44□□□□□ -0.42
LIMS1-204ENST00000409441 C5orf58C9J3I9 102 aa12.44□□□□□ -0.42
LIMS1-204ENST00000409441 SNPHO15079 494 aa12.44□□□□□ -0.42
LIMS1-204ENST00000409441 NOL3O60936 208 aaKnown RBP12.44□□□□□ -0.42
LIMS1-204ENST00000409441 SEC14L2O76054 403 aa12.44□□□□□ -0.42
LIMS1-204ENST00000409441 OPN1SWP03999 348 aa12.44□□□□□ -0.42
LIMS1-204ENST00000409441 PRKAR1AP10644 381 aa12.44□□□□□ -0.42
LIMS1-204ENST00000409441 COX6A1P12074 109 aa12.44□□□□□ -0.42
LIMS1-204ENST00000409441 ANXA8P13928 327 aa12.44□□□□□ -0.42
LIMS1-204ENST00000409441 PGDP52209 483 aa12.44□□□□□ -0.42
LIMS1-204ENST00000409441 MGAT2Q10469 447 aa12.44□□□□□ -0.42
LIMS1-204ENST00000409441 MAP4K2Q12851 820 aa12.44□□□□□ -0.42
LIMS1-204ENST00000409441 HSPB3Q12988 150 aa12.44□□□□□ -0.42
LIMS1-204ENST00000409441 ZNF267Q14586 743 aaPredicted RBP12.44□□□□□ -0.42
LIMS1-204ENST00000409441 PCOLCEQ15113 449 aa12.44□□□□□ -0.42
LIMS1-204ENST00000409441 LTB4RQ15722 352 aa12.44□□□□□ -0.42
LIMS1-204ENST00000409441 PRICKLE4Q2TBC4 344 aa12.44□□□□□ -0.42
LIMS1-204ENST00000409441 SPDYE7PQ495Y7 208 aa12.44□□□□□ -0.42
LIMS1-204ENST00000409441 CRTC2Q53ET0 693 aaPredicted RBP12.44□□□□□ -0.42
LIMS1-204ENST00000409441 ATP1A1-AS1Q5TC04 95 aa12.44□□□□□ -0.42
LIMS1-204ENST00000409441 PAPD4Q6PIY7 484 aaKnown RBP12.44□□□□□ -0.42
LIMS1-204ENST00000409441 FAM111BQ6SJ93 734 aa12.44□□□□□ -0.42
LIMS1-204ENST00000409441 CCDC81Q6ZN84 652 aa12.44□□□□□ -0.42
LIMS1-204ENST00000409441 C6orf120Q7Z4R8 191 aa12.44□□□□□ -0.42
LIMS1-204ENST00000409441 SPARTQ8N0X7 666 aa12.44□□□□□ -0.42
LIMS1-204ENST00000409441 AMER2Q8N7J2 671 aa12.44□□□□□ -0.42
LIMS1-204ENST00000409441 ZSCAN1Q8NBB4 408 aa12.44□□□□□ -0.42
LIMS1-204ENST00000409441 OR4C15Q8NGM1 316 aa12.44□□□□□ -0.42
LIMS1-204ENST00000409441 OR14A16Q8NHC5 309 aa12.44□□□□□ -0.42
LIMS1-204ENST00000409441 RASSF5Q8WWW0 418 aa12.44□□□□□ -0.42
LIMS1-204ENST00000409441 ZCCHC14Q8WYQ9 949 aaKnown RBP12.44□□□□□ -0.42
LIMS1-204ENST00000409441 KAT2AQ92830 837 aa12.44□□□□□ -0.42
LIMS1-204ENST00000409441 DAZLQ92904 295 aaKnown RBP12.44□□□□□ -0.42
LIMS1-204ENST00000409441 SENP5Q96HI0 755 aaPredicted RBP12.44□□□□□ -0.42
LIMS1-204ENST00000409441 EXD2Q9NVH0 621 aa12.44□□□□□ -0.42
LIMS1-204ENST00000409441 PCDHGB1Q9Y5G3 927 aa12.44□□□□□ -0.42
LIMS1-204ENST00000409441 ENPP4Q9Y6X5 453 aa12.44□□□□□ -0.42
LIMS1-204ENST00000409441 URB1O60287 2271 aaKnown RBP12.44□□□□□ -0.42
LIMS1-204ENST00000409441 ASPMQ8IZT6 3477 aa12.43□□□□□ -0.42
LIMS1-204ENST00000409441 TMEM8BA6NDV4 472 aa12.43□□□□□ -0.42
LIMS1-204ENST00000409441 ARRDC5A6NEK1 342 aa12.43□□□□□ -0.42
LIMS1-204ENST00000409441 TRIM64BA6NI03 449 aa12.43□□□□□ -0.42
LIMS1-204ENST00000409441 HRKO00198 91 aa12.43□□□□□ -0.42
LIMS1-204ENST00000409441 DYRK3O43781 588 aa12.43□□□□□ -0.42
LIMS1-204ENST00000409441 ANGPTL1O95841 491 aa12.43□□□□□ -0.42
LIMS1-204ENST00000409441 RHCEP18577 417 aa12.43□□□□□ -0.42
LIMS1-204ENST00000409441 PCSK6P29122 969 aa12.43□□□□□ -0.42
LIMS1-204ENST00000409441 GPC1P35052 558 aa12.43□□□□□ -0.42
LIMS1-204ENST00000409441 POLR2IP36954 125 aaKnown RBP12.43□□□□□ -0.42
LIMS1-204ENST00000409441 TMBIM6P55061 237 aa12.43□□□□□ -0.42
LIMS1-204ENST00000409441 CASP9P55211 416 aa12.43□□□□□ -0.42
LIMS1-204ENST00000409441 CSNK2BP67870 215 aa12.43□□□□□ -0.42
LIMS1-204ENST00000409441 IL1RL1Q01638 556 aa12.43□□□□□ -0.42
LIMS1-204ENST00000409441 SPIBQ01892 262 aa12.43□□□□□ -0.42
LIMS1-204ENST00000409441 KCNC4Q03721 635 aa12.43□□□□□ -0.42
LIMS1-204ENST00000409441 TLE3Q04726 772 aa12.43□□□□□ -0.42
LIMS1-204ENST00000409441 NPRL3Q12980 569 aa12.43□□□□□ -0.42
LIMS1-204ENST00000409441 ATP1A4Q13733 1029 aa12.43□□□□□ -0.42
LIMS1-204ENST00000409441 LAPTM4AQ15012 233 aa12.43□□□□□ -0.42
LIMS1-204ENST00000409441 NEDD8Q15843 81 aa12.43□□□□□ -0.42
LIMS1-204ENST00000409441 TRMT12Q53H54 448 aaKnown RBP12.43□□□□□ -0.42
LIMS1-204ENST00000409441 XAF1Q6GPH4 301 aa12.43□□□□□ -0.42
LIMS1-204ENST00000409441 TMEM64Q6YI46 380 aa12.43□□□□□ -0.42
LIMS1-204ENST00000409441 GALNT12Q8IXK2 581 aa12.43□□□□□ -0.42
LIMS1-204ENST00000409441 HORMAD2Q8N7B1 307 aa12.43□□□□□ -0.42
LIMS1-204ENST00000409441 MORN4Q8NDC4 146 aa12.43□□□□□ -0.42
LIMS1-204ENST00000409441 SFXN5Q8TD22 340 aa12.43□□□□□ -0.42
LIMS1-204ENST00000409441 THAP4Q8WY91 577 aa12.43□□□□□ -0.42
LIMS1-204ENST00000409441 C12orf43Q96C57 262 aaKnown RBP12.43□□□□□ -0.42
LIMS1-204ENST00000409441 IMMP1LQ96LU5 166 aa12.43□□□□□ -0.42
LIMS1-204ENST00000409441 PIP5K1AQ99755 562 aa12.43□□□□□ -0.42
LIMS1-204ENST00000409441 OR8D2Q9GZM6 311 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms