RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 FUNDC2Q9BWH2 189 aa16.9■□□□□ 0.3
CCDC88C-203ENST00000389856 CCDC90BQ9GZT6 254 aa16.9■□□□□ 0.3
CCDC88C-203ENST00000389856 IRF2BPLQ9H1B7 796 aa16.9■□□□□ 0.3
CCDC88C-203ENST00000389856 MKL2Q9ULH7 1088 aa16.9■□□□□ 0.3
CCDC88C-203ENST00000389856 HCN4Q9Y3Q4 1203 aa16.9■□□□□ 0.3
CCDC88C-203ENST00000389856 PCDHGA10Q9Y5H3 936 aa16.9■□□□□ 0.3
CCDC88C-203ENST00000389856 B4E171 279 aa16.89■□□□□ 0.29
CCDC88C-203ENST00000389856 SLC22A1O15245 554 aa16.89■□□□□ 0.29
CCDC88C-203ENST00000389856 GABARAPO95166 117 aa16.89■□□□□ 0.29
CCDC88C-203ENST00000389856 LGI1O95970 557 aa16.89■□□□□ 0.29
CCDC88C-203ENST00000389856 CYP4B1P13584 511 aa16.89■□□□□ 0.29
CCDC88C-203ENST00000389856 CD59P13987 128 aa16.89■□□□□ 0.29
CCDC88C-203ENST00000389856 TRHRP34981 398 aaPredicted RBP16.89■□□□□ 0.29
CCDC88C-203ENST00000389856 TSPAN7P41732 249 aa16.89■□□□□ 0.29
CCDC88C-203ENST00000389856 LIMS1P48059 325 aa16.89■□□□□ 0.29
CCDC88C-203ENST00000389856 EMDP50402 254 aa16.89■□□□□ 0.29
CCDC88C-203ENST00000389856 PSMD4P55036 377 aaKnown RBP16.89■□□□□ 0.29
CCDC88C-203ENST00000389856 PSPHP78330 225 aa16.89■□□□□ 0.29
CCDC88C-203ENST00000389856 LAPTM4AQ15012 233 aa16.89■□□□□ 0.29
CCDC88C-203ENST00000389856 FRRS1Q6ZNA5 592 aa16.89■□□□□ 0.29
CCDC88C-203ENST00000389856 ZNF605Q86T29 641 aa16.89■□□□□ 0.29
CCDC88C-203ENST00000389856 P3H2Q8IVL5 708 aa16.89■□□□□ 0.29
CCDC88C-203ENST00000389856 TAGAPQ8N103 731 aa16.89■□□□□ 0.29
CCDC88C-203ENST00000389856 GPR32P1Q8NGA4 272 aa16.89■□□□□ 0.29
CCDC88C-203ENST00000389856 TBC1D15Q8TC07 691 aa16.89■□□□□ 0.29
CCDC88C-203ENST00000389856 PHF10Q8WUB8 498 aaKnown RBP16.89■□□□□ 0.29
CCDC88C-203ENST00000389856 VSTM2LQ96N03 204 aa16.89■□□□□ 0.29
CCDC88C-203ENST00000389856 SLC46A1Q96NT5 459 aa16.89■□□□□ 0.29
CCDC88C-203ENST00000389856 FEVQ99581 238 aa16.89■□□□□ 0.29
CCDC88C-203ENST00000389856 NAA50Q9GZZ1 169 aaKnown RBP16.89■□□□□ 0.29
CCDC88C-203ENST00000389856 SAP130Q9H0E3 1048 aa16.89■□□□□ 0.29
CCDC88C-203ENST00000389856 COPS7AQ9UBW8 275 aa16.89■□□□□ 0.29
CCDC88C-203ENST00000389856 MRTO4Q9UKD2 239 aaKnown RBP16.89■□□□□ 0.29
CCDC88C-203ENST00000389856 NXT1Q9UKK6 140 aaKnown RBP16.89■□□□□ 0.29
CCDC88C-203ENST00000389856 TMCC3Q9ULS5 477 aa16.89■□□□□ 0.29
CCDC88C-203ENST00000389856 TESMINQ9Y4I5 508 aa16.89■□□□□ 0.29
CCDC88C-203ENST00000389856 XPNPEP2O43895 674 aa16.88■□□□□ 0.29
CCDC88C-203ENST00000389856 GADD45GO95257 159 aa16.88■□□□□ 0.29
CCDC88C-203ENST00000389856 KLK3P07288 261 aaPredicted RBP16.88■□□□□ 0.29
CCDC88C-203ENST00000389856 SSTR4P31391 388 aa16.88■□□□□ 0.29
CCDC88C-203ENST00000389856 FMO3P31513 532 aa16.88■□□□□ 0.29
CCDC88C-203ENST00000389856 ST13P50502 369 aaKnown RBP16.88■□□□□ 0.29
CCDC88C-203ENST00000389856 GP2P55259 537 aaKnown RBP16.88■□□□□ 0.29
CCDC88C-203ENST00000389856 DCAF7P61962 342 aa16.88■□□□□ 0.29
CCDC88C-203ENST00000389856 DUSP8Q13202 625 aa16.88■□□□□ 0.29
CCDC88C-203ENST00000389856 SF3A2Q15428 464 aaKnown RBP16.88■□□□□ 0.29
CCDC88C-203ENST00000389856 VWA2Q5GFL6 755 aa16.88■□□□□ 0.29
CCDC88C-203ENST00000389856 TYW3Q6IPR3 259 aaKnown RBP16.88■□□□□ 0.29
CCDC88C-203ENST00000389856 DGAT2L6Q6ZPD8 337 aa16.88■□□□□ 0.29
CCDC88C-203ENST00000389856 OVCH1Q7RTY7 1134 aa16.88■□□□□ 0.29
CCDC88C-203ENST00000389856 WDR53Q7Z5U6 358 aaPredicted RBP16.88■□□□□ 0.29
CCDC88C-203ENST00000389856 SUMF1Q8NBK3 374 aa16.88■□□□□ 0.29
CCDC88C-203ENST00000389856 ZNF540Q8NDQ6 660 aa16.88■□□□□ 0.29
CCDC88C-203ENST00000389856 APOBEC4Q8WW27 367 aaKnown RBP16.88■□□□□ 0.29
CCDC88C-203ENST00000389856 OIT3Q8WWZ8 545 aa16.88■□□□□ 0.29
CCDC88C-203ENST00000389856 METTL21AQ8WXB1 218 aa16.88■□□□□ 0.29
CCDC88C-203ENST00000389856 MYDGFQ969H8 173 aa16.88■□□□□ 0.29
CCDC88C-203ENST00000389856 LRFN5Q96NI6 719 aa16.88■□□□□ 0.29
CCDC88C-203ENST00000389856 SIGLEC11Q96RL6 698 aa16.88■□□□□ 0.29
CCDC88C-203ENST00000389856 C11orf16Q9NQ32 467 aa16.88■□□□□ 0.29
CCDC88C-203ENST00000389856 RXFP3Q9NSD7 469 aa16.88■□□□□ 0.29
CCDC88C-203ENST00000389856 TBC1D23Q9NUY8 699 aa16.88■□□□□ 0.29
CCDC88C-203ENST00000389856 OCIAD1Q9NX40 245 aa16.88■□□□□ 0.29
CCDC88C-203ENST00000389856 ERVK-18Q9QC07 812 aa16.88■□□□□ 0.29
CCDC88C-203ENST00000389856 GPN3Q9UHW5 284 aaPredicted RBP16.88■□□□□ 0.29
CCDC88C-203ENST00000389856 KCND3Q9UK17 655 aa16.88■□□□□ 0.29
CCDC88C-203ENST00000389856 PCDHGA6Q9Y5G7 932 aa16.88■□□□□ 0.29
CCDC88C-203ENST00000389856 SH3PXD2BA1X283 911 aa16.88■□□□□ 0.29
CCDC88C-203ENST00000389856 ANKRD33BA6NCL7 494 aa16.88■□□□□ 0.29
CCDC88C-203ENST00000389856 CDX4O14627 284 aaPredicted RBP16.88■□□□□ 0.29
CCDC88C-203ENST00000389856 KIAA0513O60268 411 aa16.88■□□□□ 0.29
CCDC88C-203ENST00000389856 MPZL2O60487 215 aa16.88■□□□□ 0.29
CCDC88C-203ENST00000389856 CLPXO76031 633 aa16.88■□□□□ 0.29
CCDC88C-203ENST00000389856 CCNB2O95067 398 aa16.88■□□□□ 0.29
CCDC88C-203ENST00000389856 HEXBP07686 556 aa16.88■□□□□ 0.29
CCDC88C-203ENST00000389856 TNFRSF1BP20333 461 aa16.88■□□□□ 0.29
CCDC88C-203ENST00000389856 CDH12P55289 794 aa16.88■□□□□ 0.29
CCDC88C-203ENST00000389856 CSRP2Q16527 193 aa16.88■□□□□ 0.29
CCDC88C-203ENST00000389856 COLEC12Q5KU26 742 aa16.88■□□□□ 0.29
CCDC88C-203ENST00000389856 SHISA5Q8N114 240 aa16.88■□□□□ 0.29
CCDC88C-203ENST00000389856 LINC00471Q8N535 108 aa16.88■□□□□ 0.29
CCDC88C-203ENST00000389856 SLC5A8Q8N695 610 aa16.88■□□□□ 0.29
CCDC88C-203ENST00000389856 SIMC1Q8NDZ2 872 aa16.88■□□□□ 0.29
CCDC88C-203ENST00000389856 STT3BQ8TCJ2 826 aa16.88■□□□□ 0.29
CCDC88C-203ENST00000389856 SGCDQ92629 289 aa16.88■□□□□ 0.29
CCDC88C-203ENST00000389856 ATOH1Q92858 354 aaPredicted RBP16.88■□□□□ 0.29
CCDC88C-203ENST00000389856 SENP5Q96HI0 755 aaPredicted RBP16.88■□□□□ 0.29
CCDC88C-203ENST00000389856 DGCR6LQ9BY27 220 aa16.88■□□□□ 0.29
CCDC88C-203ENST00000389856 VN1R1Q9GZP7 353 aa16.88■□□□□ 0.29
CCDC88C-203ENST00000389856 NCDNQ9UBB6 729 aa16.88■□□□□ 0.29
CCDC88C-203ENST00000389856 MKLN1Q9UL63 735 aa16.88■□□□□ 0.29
CCDC88C-203ENST00000389856 ZNF443Q9Y2A4 671 aaPredicted RBP16.88■□□□□ 0.29
CCDC88C-203ENST00000389856 OR10H1Q9Y4A9 318 aa16.88■□□□□ 0.29
CCDC88C-203ENST00000389856 CCDC88CQ9P219 2028 aa16.87■□□□□ 0.29
CCDC88C-203ENST00000389856 AGAP5A6NIR3 686 aa16.87■□□□□ 0.29
CCDC88C-203ENST00000389856 OR6C76A6NM76 312 aa16.87■□□□□ 0.29
CCDC88C-203ENST00000389856 WBP4O75554 376 aaKnown RBP16.87■□□□□ 0.29
CCDC88C-203ENST00000389856 RFPL3O75679 317 aa16.87■□□□□ 0.29
CCDC88C-203ENST00000389856 UGT2B17O75795 530 aa16.87■□□□□ 0.29
CCDC88C-203ENST00000389856 OXSR1O95747 527 aaPredicted RBP16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms