RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 ZNF253O75346 499 aa1.59□□□□□ -2.16
VPS13A-206ENST00000376646 PIGRP01833 764 aa1.59□□□□□ -2.16
VPS13A-206ENST00000376646 KRT6AP02538 564 aa1.59□□□□□ -2.16
VPS13A-206ENST00000376646 IGFBP1P08833 259 aaPredicted RBP1.59□□□□□ -2.16
VPS13A-206ENST00000376646 SNRPCP09234 159 aaKnown RBP1.59□□□□□ -2.16
VPS13A-206ENST00000376646 ANXA3P12429 323 aa1.59□□□□□ -2.16
VPS13A-206ENST00000376646 XRCC1P18887 633 aaPredicted RBP1.59□□□□□ -2.16
VPS13A-206ENST00000376646 KIF5BP33176 963 aa1.59□□□□□ -2.16
VPS13A-206ENST00000376646 METAP1P53582 386 aa1.59□□□□□ -2.16
VPS13A-206ENST00000376646 IST1P53990 364 aa1.59□□□□□ -2.16
VPS13A-206ENST00000376646 DCAF4L1Q3SXM0 396 aa1.59□□□□□ -2.16
VPS13A-206ENST00000376646 FAM74A3Q4VXF1 159 aa1.59□□□□□ -2.16
VPS13A-206ENST00000376646 NCR3LG1Q68D85 454 aa1.59□□□□□ -2.16
VPS13A-206ENST00000376646 LRRC8BQ6P9F7 803 aa1.59□□□□□ -2.16
VPS13A-206ENST00000376646 CBLN3Q6UW01 205 aa1.59□□□□□ -2.16
VPS13A-206ENST00000376646 BAIAP2L2Q6UXY1 529 aa1.59□□□□□ -2.16
VPS13A-206ENST00000376646 CENPUQ71F23 418 aa1.59□□□□□ -2.16
VPS13A-206ENST00000376646 UNC5CLQ8IV45 518 aa1.59□□□□□ -2.16
VPS13A-206ENST00000376646 FADS6Q8N9I5 356 aa1.59□□□□□ -2.16
VPS13A-206ENST00000376646 OR10T2Q8NGX3 314 aa1.59□□□□□ -2.16
VPS13A-206ENST00000376646 THRSPQ92748 146 aa1.59□□□□□ -2.16
VPS13A-206ENST00000376646 RAB7BQ96AH8 199 aa1.59□□□□□ -2.16
VPS13A-206ENST00000376646 C18orf25Q96B23 403 aaPredicted RBP1.59□□□□□ -2.16
VPS13A-206ENST00000376646 UPRTQ96BW1 309 aa1.59□□□□□ -2.16
VPS13A-206ENST00000376646 RANBP9Q96S59 729 aa1.59□□□□□ -2.16
VPS13A-206ENST00000376646 TEX13BQ9BXU2 312 aa1.59□□□□□ -2.16
VPS13A-206ENST00000376646 NFKBIZQ9BYH8 718 aa1.59□□□□□ -2.16
VPS13A-206ENST00000376646 ZBP1Q9H171 429 aa1.59□□□□□ -2.16
VPS13A-206ENST00000376646 SLC25A51Q9H1U9 297 aa1.59□□□□□ -2.16
VPS13A-206ENST00000376646 RHOJQ9H4E5 214 aa1.59□□□□□ -2.16
VPS13A-206ENST00000376646 DHX33Q9H6R0 707 aaKnown RBP1.59□□□□□ -2.16
VPS13A-206ENST00000376646 COG4Q9H9E3 785 aa1.59□□□□□ -2.16
VPS13A-206ENST00000376646 MEPEQ9NQ76 525 aaPredicted RBP1.59□□□□□ -2.16
VPS13A-206ENST00000376646 TIGARQ9NQ88 270 aa1.59□□□□□ -2.16
VPS13A-206ENST00000376646 ANAPC11Q9NYG5 84 aa1.59□□□□□ -2.16
VPS13A-206ENST00000376646 DUSP12Q9UNI6 340 aa1.59□□□□□ -2.16
VPS13A-206ENST00000376646 AP4B1Q9Y6B7 739 aa1.59□□□□□ -2.16
VPS13A-206ENST00000376646 CCDC7Q96M83 1385 aa1.59□□□□□ -2.16
VPS13A-206ENST00000376646 TRBV7-9A0A0J9YWB2 115 aa1.58□□□□□ -2.16
VPS13A-206ENST00000376646 A0A1B0GWJ7 208 aa1.58□□□□□ -2.16
VPS13A-206ENST00000376646 ZSCAN5BA6NJL1 495 aa1.58□□□□□ -2.16
VPS13A-206ENST00000376646 EFCAB7A8K855 629 aa1.58□□□□□ -2.16
VPS13A-206ENST00000376646 TM9SF1O15321 606 aa1.58□□□□□ -2.16
VPS13A-206ENST00000376646 DUX1O43812 170 aa1.58□□□□□ -2.16
VPS13A-206ENST00000376646 LCMT2O60294 686 aaKnown RBP1.58□□□□□ -2.16
VPS13A-206ENST00000376646 JAK2O60674 1132 aa1.58□□□□□ -2.16
VPS13A-206ENST00000376646 KBTBD11O94819 623 aa1.58□□□□□ -2.16
VPS13A-206ENST00000376646 ANP32DO95626 131 aa1.58□□□□□ -2.16
VPS13A-206ENST00000376646 LY6G6DO95868 133 aa1.58□□□□□ -2.16
VPS13A-206ENST00000376646 JCHAINP01591 159 aa1.58□□□□□ -2.16
VPS13A-206ENST00000376646 CSF2P04141 144 aa1.58□□□□□ -2.16
VPS13A-206ENST00000376646 ASNSP08243 561 aa1.58□□□□□ -2.16
VPS13A-206ENST00000376646 GIG44P09565 113 aaPredicted RBP1.58□□□□□ -2.16
VPS13A-206ENST00000376646 SDC1P18827 310 aa1.58□□□□□ -2.16
VPS13A-206ENST00000376646 ELK3P41970 407 aa1.58□□□□□ -2.16
VPS13A-206ENST00000376646 MAGEA5P43359 124 aa1.58□□□□□ -2.16
VPS13A-206ENST00000376646 NOVA1P51513 510 aaKnown RBP1.58□□□□□ -2.16
VPS13A-206ENST00000376646 ARHGDIBP52566 201 aa1.58□□□□□ -2.16
VPS13A-206ENST00000376646 OSTNP61366 133 aa1.58□□□□□ -2.16
VPS13A-206ENST00000376646 PLOD1Q02809 727 aaPredicted RBP1.58□□□□□ -2.16
VPS13A-206ENST00000376646 IL18R1Q13478 541 aa1.58□□□□□ -2.16
VPS13A-206ENST00000376646 CHI3L2Q15782 390 aa1.58□□□□□ -2.16
VPS13A-206ENST00000376646 ZNF79Q15937 498 aa1.58□□□□□ -2.16
VPS13A-206ENST00000376646 MAPK6Q16659 721 aa1.58□□□□□ -2.16
VPS13A-206ENST00000376646 MICAQ29983 383 aa1.58□□□□□ -2.16
VPS13A-206ENST00000376646 CCDC57Q2TAC2 916 aa1.58□□□□□ -2.16
VPS13A-206ENST00000376646 LINC01620Q4KN68 170 aa1.58□□□□□ -2.16
VPS13A-206ENST00000376646 SLC25A24Q6NUK1 477 aa1.58□□□□□ -2.16
VPS13A-206ENST00000376646 FAM43BQ6ZT52 329 aaPredicted RBP1.58□□□□□ -2.16
VPS13A-206ENST00000376646 LANCL3Q6ZV70 420 aa1.58□□□□□ -2.16
VPS13A-206ENST00000376646 PARGQ86W56 976 aa1.58□□□□□ -2.16
VPS13A-206ENST00000376646 NAXDQ8IW45 347 aa1.58□□□□□ -2.16
VPS13A-206ENST00000376646 ZNF540Q8NDQ6 660 aa1.58□□□□□ -2.16
VPS13A-206ENST00000376646 OR2T34Q8NGX1 318 aa1.58□□□□□ -2.16
VPS13A-206ENST00000376646 BADQ92934 168 aa1.58□□□□□ -2.16
VPS13A-206ENST00000376646 ZBED6CLQ96FA7 236 aaPredicted RBP1.58□□□□□ -2.16
VPS13A-206ENST00000376646 CYYR1Q96J86 154 aa1.58□□□□□ -2.16
VPS13A-206ENST00000376646 C9orf85Q96MD7 179 aa1.58□□□□□ -2.16
VPS13A-206ENST00000376646 GPA33Q99795 319 aa1.58□□□□□ -2.16
VPS13A-206ENST00000376646 TMEM121Q9BTD3 319 aa1.58□□□□□ -2.16
VPS13A-206ENST00000376646 COMMD4Q9H0A8 199 aa1.58□□□□□ -2.16
VPS13A-206ENST00000376646 RIBC2Q9H4K1 309 aa1.58□□□□□ -2.16
VPS13A-206ENST00000376646 CUTCQ9NTM9 273 aa1.58□□□□□ -2.16
VPS13A-206ENST00000376646 SDAD1Q9NVU7 687 aaKnown RBP eCLIP1.58□□□□□ -2.16
VPS13A-206ENST00000376646 AATFQ9NY61 560 aaKnown RBP eCLIP1.58□□□□□ -2.16
VPS13A-206ENST00000376646 NTNG1Q9Y2I2 539 aa1.58□□□□□ -2.16
VPS13A-206ENST00000376646 GRIN2DO15399 1336 aa1.58□□□□□ -2.16
VPS13A-206ENST00000376646 STX11O75558 287 aa1.57□□□□□ -2.16
VPS13A-206ENST00000376646 RHBDL1O75783 438 aa1.57□□□□□ -2.16
VPS13A-206ENST00000376646 TM7SF2O76062 418 aa1.57□□□□□ -2.16
VPS13A-206ENST00000376646 PRAMEF12O95522 483 aa1.57□□□□□ -2.16
VPS13A-206ENST00000376646 CHRNA1P02708 482 aa1.57□□□□□ -2.16
VPS13A-206ENST00000376646 CLUP10909 449 aa1.57□□□□□ -2.16
VPS13A-206ENST00000376646 UMPSP11172 480 aa1.57□□□□□ -2.16
VPS13A-206ENST00000376646 ATP6V1C1P21283 382 aa1.57□□□□□ -2.16
VPS13A-206ENST00000376646 DRD5P21918 477 aa1.57□□□□□ -2.16
VPS13A-206ENST00000376646 PAX7P23759 505 aa1.57□□□□□ -2.16
VPS13A-206ENST00000376646 SOX6P35712 828 aa1.57□□□□□ -2.16
VPS13A-206ENST00000376646 RPL4P36578 427 aaKnown RBP1.57□□□□□ -2.16
VPS13A-206ENST00000376646 ACVR1BP36896 505 aa1.57□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms