RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 CTIFO43310 598 aaKnown RBP19.61■□□□□ 0.73
CCDC28B-201ENST00000373602 SKAP2O75563 359 aaPredicted RBP19.61■□□□□ 0.73
CCDC28B-201ENST00000373602 NGFRP08138 427 aa19.61■□□□□ 0.73
CCDC28B-201ENST00000373602 LAMP1P11279 417 aa19.61■□□□□ 0.73
CCDC28B-201ENST00000373602 SERPINB4P48594 390 aa19.61■□□□□ 0.73
CCDC28B-201ENST00000373602 PTGR1Q14914 329 aa19.61■□□□□ 0.73
CCDC28B-201ENST00000373602 DUSP5Q16690 384 aa19.61■□□□□ 0.73
CCDC28B-201ENST00000373602 CPEB4Q17RY0 729 aaKnown RBP eCLIP19.61■□□□□ 0.73
CCDC28B-201ENST00000373602 GLYR1Q49A26 553 aaPredicted RBP19.61■□□□□ 0.73
CCDC28B-201ENST00000373602 IL23RQ5VWK5 629 aa19.61■□□□□ 0.73
CCDC28B-201ENST00000373602 GRAMD2AQ8IUY3 354 aa19.61■□□□□ 0.73
CCDC28B-201ENST00000373602 NUDCD3Q8IVD9 361 aa19.61■□□□□ 0.73
CCDC28B-201ENST00000373602 GOT1L1Q8NHS2 421 aaPredicted RBP19.61■□□□□ 0.73
CCDC28B-201ENST00000373602 FBXO30Q8TB52 745 aa19.61■□□□□ 0.73
CCDC28B-201ENST00000373602 C1orf50Q9BV19 199 aa19.61■□□□□ 0.73
CCDC28B-201ENST00000373602 DNAJB12Q9NXW2 375 aaKnown RBP19.61■□□□□ 0.73
CCDC28B-201ENST00000373602 ZNF337Q9Y3M9 751 aa19.61■□□□□ 0.73
CCDC28B-201ENST00000373602 ANKHD1Q8IWZ3 2542 aaKnown RBP19.61■□□□□ 0.73
CCDC28B-201ENST00000373602 TACC2O95359 2948 aa19.61■□□□□ 0.73
CCDC28B-201ENST00000373602 SPG11Q96JI7 2443 aa19.6■□□□□ 0.73
CCDC28B-201ENST00000373602 PCNX3Q9H6A9 2034 aa19.6■□□□□ 0.73
CCDC28B-201ENST00000373602 A0A1W2PRB8 838 aa19.6■□□□□ 0.73
CCDC28B-201ENST00000373602 ALG1L2C9J202 215 aa19.6■□□□□ 0.73
CCDC28B-201ENST00000373602 RGS16O15492 202 aaPredicted RBP19.6■□□□□ 0.73
CCDC28B-201ENST00000373602 KCNK2O95069 426 aa19.6■□□□□ 0.73
CCDC28B-201ENST00000373602 TGM6O95932 706 aa19.6■□□□□ 0.73
CCDC28B-201ENST00000373602 ALOX5P09917 674 aa19.6■□□□□ 0.73
CCDC28B-201ENST00000373602 PRIM2P49643 509 aa19.6■□□□□ 0.73
CCDC28B-201ENST00000373602 CLDN15P56746 228 aa19.6■□□□□ 0.73
CCDC28B-201ENST00000373602 EEF1A1P68104 462 aaKnown RBP19.6■□□□□ 0.73
CCDC28B-201ENST00000373602 SORDQ00796 357 aa19.6■□□□□ 0.73
CCDC28B-201ENST00000373602 CPTPQ5TA50 214 aa19.6■□□□□ 0.73
CCDC28B-201ENST00000373602 EEF1A1P5Q5VTE0 462 aa19.6■□□□□ 0.73
CCDC28B-201ENST00000373602 GALNT10Q86SR1 603 aa19.6■□□□□ 0.73
CCDC28B-201ENST00000373602 GCNT2Q8N0V5 402 aa19.6■□□□□ 0.73
CCDC28B-201ENST00000373602 MEIOBQ8N635 442 aa19.6■□□□□ 0.73
CCDC28B-201ENST00000373602 FNDC5Q8NAU1 212 aa19.6■□□□□ 0.73
CCDC28B-201ENST00000373602 OR4C3Q8NH37 302 aa19.6■□□□□ 0.73
CCDC28B-201ENST00000373602 PKNOX2Q96KN3 472 aa19.6■□□□□ 0.73
CCDC28B-201ENST00000373602 PIGQQ9BRB3 760 aa19.6■□□□□ 0.73
CCDC28B-201ENST00000373602 SSU72Q9NP77 194 aaKnown RBP19.6■□□□□ 0.73
CCDC28B-201ENST00000373602 RASSF1Q9NS23 344 aa19.6■□□□□ 0.73
CCDC28B-201ENST00000373602 ANKRD17O75179 2603 aaKnown RBP19.6■□□□□ 0.73
CCDC28B-201ENST00000373602 MED12LQ86YW9 2145 aa19.6■□□□□ 0.73
CCDC28B-201ENST00000373602 OR2M5A3KFT3 312 aa19.59■□□□□ 0.73
CCDC28B-201ENST00000373602 TUBAL3A6NHL2 446 aa19.59■□□□□ 0.73
CCDC28B-201ENST00000373602 OXSR1O95747 527 aaPredicted RBP19.59■□□□□ 0.73
CCDC28B-201ENST00000373602 TBXA2RP21731 343 aa19.59■□□□□ 0.73
CCDC28B-201ENST00000373602 LCN1P31025 176 aa19.59■□□□□ 0.73
CCDC28B-201ENST00000373602 SUCLG1P53597 346 aaKnown RBP19.59■□□□□ 0.73
CCDC28B-201ENST00000373602 DIO3P55073 304 aa19.59■□□□□ 0.73
CCDC28B-201ENST00000373602 EEFSECP57772 596 aaKnown RBP19.59■□□□□ 0.73
CCDC28B-201ENST00000373602 DAZAP2Q15038 168 aaPredicted RBP19.59■□□□□ 0.73
CCDC28B-201ENST00000373602 FIGNL1Q6PIW4 674 aa19.59■□□□□ 0.73
CCDC28B-201ENST00000373602 CHMP1BQ7LBR1 199 aa19.59■□□□□ 0.73
CCDC28B-201ENST00000373602 ZAR1Q86SH2 424 aa19.59■□□□□ 0.73
CCDC28B-201ENST00000373602 UBQLNLQ8IYU4 475 aa19.59■□□□□ 0.73
CCDC28B-201ENST00000373602 NATD1Q8N6N6 113 aa19.59■□□□□ 0.73
CCDC28B-201ENST00000373602 OR5M1Q8NGP8 315 aa19.59■□□□□ 0.73
CCDC28B-201ENST00000373602 PSMA8Q8TAA3 256 aa19.59■□□□□ 0.73
CCDC28B-201ENST00000373602 OR5P2Q8WZ92 322 aa19.59■□□□□ 0.73
CCDC28B-201ENST00000373602 TUBGCP3Q96CW5 907 aa19.59■□□□□ 0.73
CCDC28B-201ENST00000373602 COQ8BQ96D53 544 aa19.59■□□□□ 0.73
CCDC28B-201ENST00000373602 GPATCH1Q9BRR8 931 aaKnown RBP19.59■□□□□ 0.73
CCDC28B-201ENST00000373602 YIPF4Q9BSR8 244 aa19.59■□□□□ 0.73
CCDC28B-201ENST00000373602 POLDIP3Q9BY77 421 aaKnown RBP19.59■□□□□ 0.73
CCDC28B-201ENST00000373602 PIGMQ9H3S5 423 aa19.59■□□□□ 0.73
CCDC28B-201ENST00000373602 HHATLQ9HCP6 504 aa19.59■□□□□ 0.73
CCDC28B-201ENST00000373602 ZCCHC3Q9NUD5 404 aaKnown RBP19.59■□□□□ 0.73
CCDC28B-201ENST00000373602 ATAD3AQ9NVI7 634 aa19.59■□□□□ 0.73
CCDC28B-201ENST00000373602 RAB21Q9UL25 225 aa19.59■□□□□ 0.73
CCDC28B-201ENST00000373602 A6NNC1 897 aa19.58■□□□□ 0.72
CCDC28B-201ENST00000373602 NDUFB5O43674 189 aa19.58■□□□□ 0.72
CCDC28B-201ENST00000373602 ITM2AO43736 263 aa19.58■□□□□ 0.72
CCDC28B-201ENST00000373602 HSPA4LO95757 839 aa19.58■□□□□ 0.72
CCDC28B-201ENST00000373602 HMGN2P05204 90 aaKnown RBP19.58■□□□□ 0.72
CCDC28B-201ENST00000373602 DNAJA1P31689 397 aaKnown RBP19.58■□□□□ 0.72
CCDC28B-201ENST00000373602 TMEM44Q2T9K0 475 aa19.58■□□□□ 0.72
CCDC28B-201ENST00000373602 SPNS3Q6ZMD2 512 aa19.58■□□□□ 0.72
CCDC28B-201ENST00000373602 P4HA3Q7Z4N8 544 aa19.58■□□□□ 0.72
CCDC28B-201ENST00000373602 RIMKLAQ8IXN7 391 aa19.58■□□□□ 0.72
CCDC28B-201ENST00000373602 KRTCAP2Q8N6L1 136 aa19.58■□□□□ 0.72
CCDC28B-201ENST00000373602 COX18Q8N8Q8 333 aa19.58■□□□□ 0.72
CCDC28B-201ENST00000373602 PPP1R14CQ8TAE6 165 aa19.58■□□□□ 0.72
CCDC28B-201ENST00000373602 NUDT8Q8WV74 236 aa19.58■□□□□ 0.72
CCDC28B-201ENST00000373602 NRGNQ92686 78 aa19.58■□□□□ 0.72
CCDC28B-201ENST00000373602 STACQ99469 402 aa19.58■□□□□ 0.72
CCDC28B-201ENST00000373602 PRPF18Q99633 342 aaKnown RBP19.58■□□□□ 0.72
CCDC28B-201ENST00000373602 RBM24Q9BX46 236 aaKnown RBP19.58■□□□□ 0.72
CCDC28B-201ENST00000373602 BTBD2Q9BX70 525 aa19.58■□□□□ 0.72
CCDC28B-201ENST00000373602 DUSP22Q9NRW4 184 aa19.58■□□□□ 0.72
CCDC28B-201ENST00000373602 FBXO34Q9NWN3 711 aa19.58■□□□□ 0.72
CCDC28B-201ENST00000373602 GIN1Q9NXP7 522 aa19.58■□□□□ 0.72
CCDC28B-201ENST00000373602 EIF3LQ9Y262 564 aaKnown RBP19.58■□□□□ 0.72
CCDC28B-201ENST00000373602 TNFSF12-TNFSF13A0A0A6YY99 330 aa19.57■□□□□ 0.72
CCDC28B-201ENST00000373602 A0A1W2PNV4 684 aa19.57■□□□□ 0.72
CCDC28B-201ENST00000373602 WDR91A4D1P6 747 aa19.57■□□□□ 0.72
CCDC28B-201ENST00000373602 SLC22A20A6NK97 555 aa19.57■□□□□ 0.72
CCDC28B-201ENST00000373602 H0YC42 278 aa19.57■□□□□ 0.72
CCDC28B-201ENST00000373602 H3BML4 177 aa19.57■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms