RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 CLIP3Q96DZ5 547 aa12.76□□□□□ -0.37
PTPRF-202ENST00000372405 ARSGQ96EG1 525 aa12.76□□□□□ -0.37
PTPRF-202ENST00000372405 MCHR1Q99705 422 aa12.76□□□□□ -0.37
PTPRF-202ENST00000372405 GPA33Q99795 319 aa12.76□□□□□ -0.37
PTPRF-202ENST00000372405 MESP1Q9BRJ9 268 aa12.76□□□□□ -0.37
PTPRF-202ENST00000372405 OR8D2Q9GZM6 311 aa12.76□□□□□ -0.37
PTPRF-202ENST00000372405 TGIF2Q9GZN2 237 aa12.76□□□□□ -0.37
PTPRF-202ENST00000372405 TRIM45Q9H8W5 580 aaPredicted RBP12.76□□□□□ -0.37
PTPRF-202ENST00000372405 ZNF556Q9HAH1 456 aa12.76□□□□□ -0.37
PTPRF-202ENST00000372405 A0A087WUU8 490 aa12.75□□□□□ -0.37
PTPRF-202ENST00000372405 NPIPB9F8W1W9 429 aa12.75□□□□□ -0.37
PTPRF-202ENST00000372405 CYP7B1O75881 506 aa12.75□□□□□ -0.37
PTPRF-202ENST00000372405 OR6B1O95007 311 aa12.75□□□□□ -0.37
PTPRF-202ENST00000372405 TP53P04637 393 aaPredicted RBP12.75□□□□□ -0.37
PTPRF-202ENST00000372405 IGFBP1P08833 259 aaPredicted RBP12.75□□□□□ -0.37
PTPRF-202ENST00000372405 CCNYL3P0C7X3 344 aa12.75□□□□□ -0.37
PTPRF-202ENST00000372405 GKN3PP0CG01 181 aa12.75□□□□□ -0.37
PTPRF-202ENST00000372405 HTR2AP28223 471 aa12.75□□□□□ -0.37
PTPRF-202ENST00000372405 GRK6P43250 576 aa12.75□□□□□ -0.37
PTPRF-202ENST00000372405 RPS6KA3P51812 740 aa12.75□□□□□ -0.37
PTPRF-202ENST00000372405 TUBA4AP68366 448 aa12.75□□□□□ -0.37
PTPRF-202ENST00000372405 MAD2L1BPQ15013 274 aaPredicted RBP12.75□□□□□ -0.37
PTPRF-202ENST00000372405 CLPPQ16740 277 aaPredicted RBP12.75□□□□□ -0.37
PTPRF-202ENST00000372405 NKAIN1Q4KMZ8 207 aa12.75□□□□□ -0.37
PTPRF-202ENST00000372405 EIPR1Q53HC9 387 aa12.75□□□□□ -0.37
PTPRF-202ENST00000372405 PDZK1Q5T2W1 519 aa12.75□□□□□ -0.37
PTPRF-202ENST00000372405 ZER1Q7Z7L7 766 aa12.75□□□□□ -0.37
PTPRF-202ENST00000372405 ENTHD1Q8IYW4 607 aa12.75□□□□□ -0.37
PTPRF-202ENST00000372405 BCORP1Q8N888 145 aa12.75□□□□□ -0.37
PTPRF-202ENST00000372405 BMPERQ8N8U9 685 aa12.75□□□□□ -0.37
PTPRF-202ENST00000372405 SETD9Q8NE22 299 aa12.75□□□□□ -0.37
PTPRF-202ENST00000372405 STT3BQ8TCJ2 826 aa12.75□□□□□ -0.37
PTPRF-202ENST00000372405 SLC2A12Q8TD20 617 aa12.75□□□□□ -0.37
PTPRF-202ENST00000372405 PMM1Q92871 262 aa12.75□□□□□ -0.37
PTPRF-202ENST00000372405 CTRCQ99895 268 aa12.75□□□□□ -0.37
PTPRF-202ENST00000372405 SLC7A5P2Q9GIP4 190 aa12.75□□□□□ -0.37
PTPRF-202ENST00000372405 ADNPQ9H2P0 1102 aa12.75□□□□□ -0.37
PTPRF-202ENST00000372405 Q9N2J8 555 aa12.75□□□□□ -0.37
PTPRF-202ENST00000372405 PAK1IP1Q9NWT1 392 aaPredicted RBP12.75□□□□□ -0.37
PTPRF-202ENST00000372405 FTSJ1Q9UET6 329 aa12.75□□□□□ -0.37
PTPRF-202ENST00000372405 CBLCQ9ULV8 474 aa12.75□□□□□ -0.37
PTPRF-202ENST00000372405 MGAT4BQ9UQ53 548 aa12.75□□□□□ -0.37
PTPRF-202ENST00000372405 PCDHGA5Q9Y5G8 931 aa12.75□□□□□ -0.37
PTPRF-202ENST00000372405 HSPE1-MOB4S4R3N1 261 aa12.75□□□□□ -0.37
PTPRF-202ENST00000372405 A0A087WXM4 84 aa12.74□□□□□ -0.37
PTPRF-202ENST00000372405 FAM86C2PA6NEL3 165 aa12.74□□□□□ -0.37
PTPRF-202ENST00000372405 SLC1A7O00341 560 aa12.74□□□□□ -0.37
PTPRF-202ENST00000372405 ADAM11O75078 769 aa12.74□□□□□ -0.37
PTPRF-202ENST00000372405 WBP4O75554 376 aaKnown RBP12.74□□□□□ -0.37
PTPRF-202ENST00000372405 HTR1AP08908 422 aa12.74□□□□□ -0.37
PTPRF-202ENST00000372405 MMP11P24347 488 aa12.74□□□□□ -0.37
PTPRF-202ENST00000372405 CHMP24386 653 aa12.74□□□□□ -0.37
PTPRF-202ENST00000372405 GGT2P36268 569 aa12.74□□□□□ -0.37
PTPRF-202ENST00000372405 ALDH3B2P48448 385 aa12.74□□□□□ -0.37
PTPRF-202ENST00000372405 NR1H2P55055 460 aa12.74□□□□□ -0.37
PTPRF-202ENST00000372405 SMN1Q16637 294 aaKnown RBP12.74□□□□□ -0.37
PTPRF-202ENST00000372405 RBM48Q5RL73 367 aaKnown RBP12.74□□□□□ -0.37
PTPRF-202ENST00000372405 LCN10Q6JVE6 187 aa12.74□□□□□ -0.37
PTPRF-202ENST00000372405 GDF7Q7Z4P5 450 aa12.74□□□□□ -0.37
PTPRF-202ENST00000372405 NKAIN4Q8IVV8 208 aa12.74□□□□□ -0.37
PTPRF-202ENST00000372405 APH1BQ8WW43 257 aa12.74□□□□□ -0.37
PTPRF-202ENST00000372405 APOL4Q9BPW4 351 aa12.74□□□□□ -0.37
PTPRF-202ENST00000372405 NUDT9Q9BW91 350 aa12.74□□□□□ -0.37
PTPRF-202ENST00000372405 DGCR6LQ9BY27 220 aa12.74□□□□□ -0.37
PTPRF-202ENST00000372405 TUBA8Q9NY65 449 aaPredicted RBP12.74□□□□□ -0.37
PTPRF-202ENST00000372405 PRODH2Q9UF12 536 aa12.74□□□□□ -0.37
PTPRF-202ENST00000372405 CLCA3PQ9Y6N3 262 aa12.74□□□□□ -0.37
PTPRF-202ENST00000372405 CACNA1HO95180 2353 aa12.74□□□□□ -0.37
PTPRF-202ENST00000372405 ZNF318Q5VUA4 2279 aa12.74□□□□□ -0.37
PTPRF-202ENST00000372405 XPNPEP2O43895 674 aa12.74□□□□□ -0.37
PTPRF-202ENST00000372405 CNOT3O75175 753 aaKnown RBP12.74□□□□□ -0.37
PTPRF-202ENST00000372405 LDOC1O95751 146 aaPredicted RBP12.74□□□□□ -0.37
PTPRF-202ENST00000372405 ZGLP1P0C6A0 271 aa12.74□□□□□ -0.37
PTPRF-202ENST00000372405 ACP1P24666 158 aa12.74□□□□□ -0.37
PTPRF-202ENST00000372405 FMO3P31513 532 aa12.74□□□□□ -0.37
PTPRF-202ENST00000372405 TARDBPQ13148 414 aaKnown RBP eCLIP12.74□□□□□ -0.373e-6■■■■□ 20.1
PTPRF-202ENST00000372405 PTGES3Q15185 160 aaKnown RBP12.74□□□□□ -0.37
PTPRF-202ENST00000372405 TMEM236Q5W0B7 351 aa12.74□□□□□ -0.37
PTPRF-202ENST00000372405 PLEKHM3Q6ZWE6 761 aa12.74□□□□□ -0.37
PTPRF-202ENST00000372405 PPP1R3BQ86XI6 285 aa12.74□□□□□ -0.37
PTPRF-202ENST00000372405 MEX3DQ86XN8 651 aaKnown RBP12.74□□□□□ -0.37
PTPRF-202ENST00000372405 PLPP5Q8NEB5 264 aa12.74□□□□□ -0.37
PTPRF-202ENST00000372405 CNOT9Q92600 299 aaKnown RBP12.74□□□□□ -0.37
PTPRF-202ENST00000372405 TMIGD2Q96BF3 282 aa12.74□□□□□ -0.37
PTPRF-202ENST00000372405 UCK2Q9BZX2 261 aa12.74□□□□□ -0.37
PTPRF-202ENST00000372405 CACYBPQ9HB71 228 aaKnown RBP12.74□□□□□ -0.37
PTPRF-202ENST00000372405 RASSF1Q9NS23 344 aa12.74□□□□□ -0.37
PTPRF-202ENST00000372405 RNF6Q9Y252 685 aa12.74□□□□□ -0.37
PTPRF-202ENST00000372405 PCDHGB2Q9Y5G2 931 aa12.74□□□□□ -0.37
PTPRF-202ENST00000372405 PCDHGA10Q9Y5H3 936 aa12.74□□□□□ -0.37
PTPRF-202ENST00000372405 HEATR5AQ86XA9 2040 aa12.73□□□□□ -0.37
PTPRF-202ENST00000372405 EFCAB7A8K855 629 aa12.73□□□□□ -0.37
PTPRF-202ENST00000372405 AP3D1O14617 1153 aa12.73□□□□□ -0.37
PTPRF-202ENST00000372405 OR5F1O95221 314 aa12.73□□□□□ -0.37
PTPRF-202ENST00000372405 ONECUT2O95948 504 aa12.73□□□□□ -0.37
PTPRF-202ENST00000372405 FGF5P12034 268 aa12.73□□□□□ -0.37
PTPRF-202ENST00000372405 DRD5P21918 477 aa12.73□□□□□ -0.37
PTPRF-202ENST00000372405 CRISP1P54107 249 aa12.73□□□□□ -0.37
PTPRF-202ENST00000372405 ST3GAL3Q11203 375 aa12.73□□□□□ -0.37
PTPRF-202ENST00000372405 TRAM2Q15035 370 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms