RNA–Protein interactions for RNA: ENST00000362455.1

RNU4-39P-201, Transcript of RNA, U4 small nuclear 39, pseudogene, humanhuman

BASIC

Gene RNU4-39P, Length 127 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-39P-201ENST00000362455 CCM2Q9BSQ5 444 aa4.8□□□□□ -1.64
RNU4-39P-201ENST00000362455 RAB34Q9BZG1 259 aa4.8□□□□□ -1.64
RNU4-39P-201ENST00000362455 CARD9Q9H257 536 aa4.8□□□□□ -1.64
RNU4-39P-201ENST00000362455 SYTL2Q9HCH5 934 aa4.8□□□□□ -1.64
RNU4-39P-201ENST00000362455 GPN1Q9HCN4 374 aaPredicted RBP4.8□□□□□ -1.64
RNU4-39P-201ENST00000362455 PPP1R3CQ9UQK1 317 aa4.8□□□□□ -1.64
RNU4-39P-201ENST00000362455 ERVK-19Q9WJR5 959 aa4.8□□□□□ -1.64
RNU4-39P-201ENST00000362455 ATP6AP2A0A1C7CYW4 349 aa4.79□□□□□ -1.64
RNU4-39P-201ENST00000362455 KRT87PA6NCN2 255 aa4.79□□□□□ -1.64
RNU4-39P-201ENST00000362455 TRABD2BA6NFA1 517 aa4.79□□□□□ -1.64
RNU4-39P-201ENST00000362455 SRRM4A7MD48 611 aaKnown RBP4.79□□□□□ -1.64
RNU4-39P-201ENST00000362455 MAGEC1O60732 1142 aa4.79□□□□□ -1.64
RNU4-39P-201ENST00000362455 HSF2BPO75031 334 aa4.79□□□□□ -1.64
RNU4-39P-201ENST00000362455 ATP6V1G1O75348 118 aa4.79□□□□□ -1.64
RNU4-39P-201ENST00000362455 SLC4A1P02730 911 aa4.79□□□□□ -1.64
RNU4-39P-201ENST00000362455 APODP05090 189 aa4.79□□□□□ -1.64
RNU4-39P-201ENST00000362455 ALPPP05187 535 aa4.79□□□□□ -1.64
RNU4-39P-201ENST00000362455 SP1P08047 785 aa4.79□□□□□ -1.64
RNU4-39P-201ENST00000362455 ZDHHC11BP0C7U3 371 aa4.79□□□□□ -1.64
RNU4-39P-201ENST00000362455 ALPPL2P10696 532 aa4.79□□□□□ -1.64
RNU4-39P-201ENST00000362455 ANPEPP15144 967 aa4.79□□□□□ -1.64
RNU4-39P-201ENST00000362455 EZRP15311 586 aaKnown RBP4.79□□□□□ -1.64
RNU4-39P-201ENST00000362455 WARSP23381 471 aaKnown RBP4.79□□□□□ -1.64
RNU4-39P-201ENST00000362455 CLDN6P56747 220 aa4.79□□□□□ -1.64
RNU4-39P-201ENST00000362455 KCNK10P57789 538 aa4.79□□□□□ -1.64
RNU4-39P-201ENST00000362455 HMGN5P82970 282 aaKnown RBP4.79□□□□□ -1.64
RNU4-39P-201ENST00000362455 PDK1Q15118 436 aa4.79□□□□□ -1.64
RNU4-39P-201ENST00000362455 STX1AQ16623 288 aa4.79□□□□□ -1.64
RNU4-39P-201ENST00000362455 SPANXN4Q5MJ08 99 aa4.79□□□□□ -1.64
RNU4-39P-201ENST00000362455 ADAMTSL4-AS1Q5T5F5 129 aa4.79□□□□□ -1.64
RNU4-39P-201ENST00000362455 FIP1L1Q6UN15 594 aaKnown RBP4.79□□□□□ -1.64
RNU4-39P-201ENST00000362455 TMEM64Q6YI46 380 aa4.79□□□□□ -1.64
RNU4-39P-201ENST00000362455 CYP4V2Q6ZWL3 525 aaPredicted RBP4.79□□□□□ -1.64
RNU4-39P-201ENST00000362455 USP43Q70EL4 1123 aa4.79□□□□□ -1.64
RNU4-39P-201ENST00000362455 NAXDQ8IW45 347 aa4.79□□□□□ -1.64
RNU4-39P-201ENST00000362455 HDDC3Q8N4P3 179 aa4.79□□□□□ -1.64
RNU4-39P-201ENST00000362455 OR5T2Q8NGG2 359 aa4.79□□□□□ -1.64
RNU4-39P-201ENST00000362455 CCDC26Q8TAB7 109 aa4.79□□□□□ -1.64
RNU4-39P-201ENST00000362455 KIAA1524Q8TCG1 905 aa4.79□□□□□ -1.64
RNU4-39P-201ENST00000362455 MRGPRDQ8TDS7 321 aa4.79□□□□□ -1.64
RNU4-39P-201ENST00000362455 UBTD2Q8WUN7 234 aa4.79□□□□□ -1.64
RNU4-39P-201ENST00000362455 DNASE2BQ8WZ79 361 aa4.79□□□□□ -1.64
RNU4-39P-201ENST00000362455 SLCO4A1Q96BD0 722 aa4.79□□□□□ -1.64
RNU4-39P-201ENST00000362455 FBXO17Q96EF6 278 aa4.79□□□□□ -1.64
RNU4-39P-201ENST00000362455 HPDLQ96IR7 371 aa4.79□□□□□ -1.64
RNU4-39P-201ENST00000362455 RUNDC3BQ96NL0 473 aa4.79□□□□□ -1.64
RNU4-39P-201ENST00000362455 GABRG3Q99928 467 aa4.79□□□□□ -1.64
RNU4-39P-201ENST00000362455 WDR13Q9H1Z4 485 aa4.79□□□□□ -1.64
RNU4-39P-201ENST00000362455 DPEP3Q9H4B8 488 aa4.79□□□□□ -1.64
RNU4-39P-201ENST00000362455 ZNF665Q9H7R5 613 aa4.79□□□□□ -1.64
RNU4-39P-201ENST00000362455 C3orf14Q9HBI5 128 aa4.79□□□□□ -1.64
RNU4-39P-201ENST00000362455 SPHK2Q9NRA0 654 aa4.79□□□□□ -1.64
RNU4-39P-201ENST00000362455 PIGVQ9NUD9 493 aa4.79□□□□□ -1.64
RNU4-39P-201ENST00000362455 ATAD3AQ9NVI7 634 aa4.79□□□□□ -1.64
RNU4-39P-201ENST00000362455 TRIM10Q9UDY6 481 aa4.79□□□□□ -1.64
RNU4-39P-201ENST00000362455 TSPAN16Q9UKR8 245 aa4.79□□□□□ -1.64
RNU4-39P-201ENST00000362455 CDH9Q9ULB4 789 aa4.79□□□□□ -1.64
RNU4-39P-201ENST00000362455 PCNX2A6NKB5 2137 aa4.79□□□□□ -1.64
RNU4-39P-201ENST00000362455 ACACAQ13085 2346 aa4.79□□□□□ -1.64
RNU4-39P-201ENST00000362455 MGAQ8IWI9 3026 aa4.78□□□□□ -1.64
RNU4-39P-201ENST00000362455 GREB1Q4ZG55 1949 aa4.78□□□□□ -1.64
RNU4-39P-201ENST00000362455 NAV2Q8IVL1 2488 aa4.78□□□□□ -1.64
RNU4-39P-201ENST00000362455 KIF26AQ9ULI4 1882 aaPredicted RBP4.78□□□□□ -1.64
RNU4-39P-201ENST00000362455 hCG_38984A0A1B0GV85 526 aa4.78□□□□□ -1.64
RNU4-39P-201ENST00000362455 FAM92AA1XBS5 289 aa4.78□□□□□ -1.64
RNU4-39P-201ENST00000362455 MEIOCA2RUB1 952 aa4.78□□□□□ -1.64
RNU4-39P-201ENST00000362455 LMO7DNF2Z398 122 aa4.78□□□□□ -1.64
RNU4-39P-201ENST00000362455 SLC9A3R1O14745 358 aaPredicted RBP4.78□□□□□ -1.64
RNU4-39P-201ENST00000362455 SURF4O15260 269 aa4.78□□□□□ -1.64
RNU4-39P-201ENST00000362455 P2RX6O15547 441 aa4.78□□□□□ -1.64
RNU4-39P-201ENST00000362455 CPNE6O95741 557 aa4.78□□□□□ -1.64
RNU4-39P-201ENST00000362455 CLDN1O95832 211 aa4.78□□□□□ -1.64
RNU4-39P-201ENST00000362455 EPOP01588 193 aa4.78□□□□□ -1.64
RNU4-39P-201ENST00000362455 GSTA2P09210 222 aa4.78□□□□□ -1.64
RNU4-39P-201ENST00000362455 MBL2P11226 248 aaPredicted RBP4.78□□□□□ -1.64
RNU4-39P-201ENST00000362455 HLA-FP30511 346 aa4.78□□□□□ -1.64
RNU4-39P-201ENST00000362455 FEN1P39748 380 aaKnown RBP4.78□□□□□ -1.64
RNU4-39P-201ENST00000362455 OPRL1P41146 370 aa4.78□□□□□ -1.64
RNU4-39P-201ENST00000362455 CNN1P51911 297 aaKnown RBP4.78□□□□□ -1.64
RNU4-39P-201ENST00000362455 ATXN3P54252 364 aaPredicted RBP4.78□□□□□ -1.64
RNU4-39P-201ENST00000362455 SRP54P61011 504 aaKnown RBP4.78□□□□□ -1.64
RNU4-39P-201ENST00000362455 PPP1R8Q12972 351 aaKnown RBP4.78□□□□□ -1.64
RNU4-39P-201ENST00000362455 MSLNQ13421 630 aaPredicted RBP4.78□□□□□ -1.64
RNU4-39P-201ENST00000362455 ENPP2Q13822 863 aa4.78□□□□□ -1.64
RNU4-39P-201ENST00000362455 KRT31Q15323 416 aa4.78□□□□□ -1.64
RNU4-39P-201ENST00000362455 SGSM1Q2NKQ1 1148 aa4.78□□□□□ -1.64
RNU4-39P-201ENST00000362455 PRAMEF7Q5VXH5 474 aa4.78□□□□□ -1.64
RNU4-39P-201ENST00000362455 RFPL4BQ6ZWI9 263 aa4.78□□□□□ -1.64
RNU4-39P-201ENST00000362455 CATSPERDQ86XM0 798 aa4.78□□□□□ -1.64
RNU4-39P-201ENST00000362455 CBWD2Q8IUF1 395 aa4.78□□□□□ -1.64
RNU4-39P-201ENST00000362455 DND1Q8IYX4 353 aaKnown RBP4.78□□□□□ -1.64
RNU4-39P-201ENST00000362455 SLC22A15Q8IZD6 547 aa4.78□□□□□ -1.64
RNU4-39P-201ENST00000362455 BATF2Q8N1L9 274 aa4.78□□□□□ -1.64
RNU4-39P-201ENST00000362455 FAM184AQ8NB25 1140 aa4.78□□□□□ -1.64
RNU4-39P-201ENST00000362455 CCNYQ8ND76 341 aa4.78□□□□□ -1.64
RNU4-39P-201ENST00000362455 GANCQ8TET4 914 aa4.78□□□□□ -1.64
RNU4-39P-201ENST00000362455 PRCCQ92733 491 aaPredicted RBP4.78□□□□□ -1.64
RNU4-39P-201ENST00000362455 SSX3Q99909 188 aa4.78□□□□□ -1.64
RNU4-39P-201ENST00000362455 PKP2Q99959 881 aa4.78□□□□□ -1.64
RNU4-39P-201ENST00000362455 CLEC7AQ9BXN2 247 aa4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 68.7 ms