RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 TBL1XR1Q9BZK7 514 aa12.37□□□□□ -0.43
VPS29-201ENST00000360579 GRIP2Q9C0E4 1043 aa12.37□□□□□ -0.43
VPS29-201ENST00000360579 DPH5Q9H2P9 285 aa12.37□□□□□ -0.43
VPS29-201ENST00000360579 Q9N2J8 555 aa12.37□□□□□ -0.43
VPS29-201ENST00000360579 FAIMQ9NVQ4 179 aa12.37□□□□□ -0.43
VPS29-201ENST00000360579 TMEM160Q9NX00 188 aa12.37□□□□□ -0.43
VPS29-201ENST00000360579 VPS29Q9UBQ0 182 aa12.37□□□□□ -0.43
VPS29-201ENST00000360579 MCM8Q9UJA3 840 aa12.37□□□□□ -0.43
VPS29-201ENST00000360579 A0A087WZY1 265 aa12.36□□□□□ -0.43
VPS29-201ENST00000360579 FAM187AA6NFU0 413 aa12.36□□□□□ -0.43
VPS29-201ENST00000360579 SMIM24O75264 130 aa12.36□□□□□ -0.43
VPS29-201ENST00000360579 NME6O75414 186 aaPredicted RBP12.36□□□□□ -0.43
VPS29-201ENST00000360579 IL3P08700 152 aa12.36□□□□□ -0.43
VPS29-201ENST00000360579 PABPC4LP0CB38 370 aaKnown RBP12.36□□□□□ -0.43
VPS29-201ENST00000360579 HSD3B1P14060 373 aa12.36□□□□□ -0.43
VPS29-201ENST00000360579 HSD3B2P26439 372 aa12.36□□□□□ -0.43
VPS29-201ENST00000360579 TYK2P29597 1187 aa12.36□□□□□ -0.43
VPS29-201ENST00000360579 SERPINB8P50452 374 aa12.36□□□□□ -0.43
VPS29-201ENST00000360579 ZNF844Q08AG5 666 aa12.36□□□□□ -0.43
VPS29-201ENST00000360579 ZNHIT3Q15649 155 aaPredicted RBP12.36□□□□□ -0.43
VPS29-201ENST00000360579 NRF1Q16656 503 aa12.36□□□□□ -0.43
VPS29-201ENST00000360579 PDSS1Q5T2R2 415 aa12.36□□□□□ -0.43
VPS29-201ENST00000360579 C6orf52Q5T4I8 152 aa12.36□□□□□ -0.43
VPS29-201ENST00000360579 LGSNQ5TDP6 509 aa12.36□□□□□ -0.43
VPS29-201ENST00000360579 OR7G2Q8NG99 324 aa12.36□□□□□ -0.43
VPS29-201ENST00000360579 NSUN5Q96P11 429 aaKnown RBP12.36□□□□□ -0.43
VPS29-201ENST00000360579 SLC35C2Q9NQQ7 365 aa12.36□□□□□ -0.43
VPS29-201ENST00000360579 FARSBQ9NSD9 589 aaKnown RBP12.36□□□□□ -0.43
VPS29-201ENST00000360579 RNF14Q9UBS8 474 aa12.36□□□□□ -0.43
VPS29-201ENST00000360579 LPAR3Q9UBY5 353 aa12.36□□□□□ -0.43
VPS29-201ENST00000360579 SAR1BQ9Y6B6 198 aa12.36□□□□□ -0.43
VPS29-201ENST00000360579 A0A087WV62 115 aa12.35□□□□□ -0.43
VPS29-201ENST00000360579 GNG14A0A1W2PPG7 69 aa12.35□□□□□ -0.43
VPS29-201ENST00000360579 ADAMDEC1O15204 470 aa12.35□□□□□ -0.43
VPS29-201ENST00000360579 IL33O95760 270 aa12.35□□□□□ -0.43
VPS29-201ENST00000360579 ME2P23368 584 aa12.35□□□□□ -0.43
VPS29-201ENST00000360579 IL32P24001 234 aa12.35□□□□□ -0.43
VPS29-201ENST00000360579 ADH6P28332 368 aa12.35□□□□□ -0.43
VPS29-201ENST00000360579 AGTR1P30556 359 aa12.35□□□□□ -0.43
VPS29-201ENST00000360579 THBS2P35442 1172 aa12.35□□□□□ -0.43
VPS29-201ENST00000360579 MAGEA4P43358 317 aa12.35□□□□□ -0.43
VPS29-201ENST00000360579 CAV1Q03135 178 aa12.35□□□□□ -0.43
VPS29-201ENST00000360579 FAPQ12884 760 aa12.35□□□□□ -0.43
VPS29-201ENST00000360579 ESPNLQ6ZVH7 1005 aa12.35□□□□□ -0.43
VPS29-201ENST00000360579 MARCH3Q86UD3 253 aa12.35□□□□□ -0.43
VPS29-201ENST00000360579 OR2V1Q8NHB1 315 aa12.35□□□□□ -0.43
VPS29-201ENST00000360579 ADGRG7Q96K78 797 aa12.35□□□□□ -0.43
VPS29-201ENST00000360579 BBS4Q96RK4 519 aa12.35□□□□□ -0.43
VPS29-201ENST00000360579 BEX2Q9BXY8 128 aa12.35□□□□□ -0.43
VPS29-201ENST00000360579 VPS11Q9H270 941 aa12.35□□□□□ -0.43
VPS29-201ENST00000360579 C3orf14Q9HBI5 128 aa12.35□□□□□ -0.43
VPS29-201ENST00000360579 XPR1Q9UBH6 696 aa12.35□□□□□ -0.43
VPS29-201ENST00000360579 SVEP1Q4LDE5 3571 aa12.35□□□□□ -0.43
VPS29-201ENST00000360579 CR1P17927 2039 aa12.34□□□□□ -0.43
VPS29-201ENST00000360579 HMX2A2RU54 273 aa12.34□□□□□ -0.43
VPS29-201ENST00000360579 CXCL13O43927 109 aa12.34□□□□□ -0.43
VPS29-201ENST00000360579 PCDH7O60245 1069 aa12.34□□□□□ -0.43
VPS29-201ENST00000360579 ANGPTL1O95841 491 aa12.34□□□□□ -0.43
VPS29-201ENST00000360579 KRT6AP02538 564 aa12.34□□□□□ -0.43
VPS29-201ENST00000360579 KRT6BP04259 564 aa12.34□□□□□ -0.43
VPS29-201ENST00000360579 GSTM5P46439 218 aa12.34□□□□□ -0.43
VPS29-201ENST00000360579 KRT6CP48668 564 aa12.34□□□□□ -0.43
VPS29-201ENST00000360579 DSCR9P59020 149 aa12.34□□□□□ -0.43
VPS29-201ENST00000360579 RAC1P63000 192 aa12.34□□□□□ -0.43
VPS29-201ENST00000360579 PRR5P85299 388 aa12.34□□□□□ -0.43
VPS29-201ENST00000360579 CSTF3Q12996 717 aaKnown RBP12.34□□□□□ -0.43
VPS29-201ENST00000360579 PGGHGQ32M88 737 aa12.34□□□□□ -0.43
VPS29-201ENST00000360579 SPIN4Q56A73 249 aa12.34□□□□□ -0.43
VPS29-201ENST00000360579 TMEM201Q5SNT2 666 aa12.34□□□□□ -0.43
VPS29-201ENST00000360579 SFRP5Q5T4F7 317 aa12.34□□□□□ -0.43
VPS29-201ENST00000360579 LETMD1Q6P1Q0 360 aa12.34□□□□□ -0.43
VPS29-201ENST00000360579 FIGNL1Q6PIW4 674 aa12.34□□□□□ -0.43
VPS29-201ENST00000360579 SSX8Q7RTT4 187 aa12.34□□□□□ -0.43
VPS29-201ENST00000360579 ZC3HAV1Q7Z2W4 902 aaKnown RBP12.34□□□□□ -0.43
VPS29-201ENST00000360579 GALNT10Q86SR1 603 aa12.34□□□□□ -0.43
VPS29-201ENST00000360579 CCDC25Q86WR0 208 aa12.34□□□□□ -0.43
VPS29-201ENST00000360579 GTPBP8Q8N3Z3 284 aaPredicted RBP12.34□□□□□ -0.43
VPS29-201ENST00000360579 ZBTB8AQ96BR9 441 aa12.34□□□□□ -0.43
VPS29-201ENST00000360579 REXO5Q96IC2 774 aaKnown RBP12.34□□□□□ -0.43
VPS29-201ENST00000360579 TRAF4Q9BUZ4 470 aaPredicted RBP12.34□□□□□ -0.43
VPS29-201ENST00000360579 RTN4RQ9BZR6 473 aa12.34□□□□□ -0.43
VPS29-201ENST00000360579 C12orf49Q9H741 205 aa12.34□□□□□ -0.43
VPS29-201ENST00000360579 FBXO34Q9NWN3 711 aa12.34□□□□□ -0.43
VPS29-201ENST00000360579 FLRT3Q9NZU0 649 aa12.34□□□□□ -0.43
VPS29-201ENST00000360579 C19orf53Q9UNZ5 99 aaPredicted RBP12.34□□□□□ -0.43
VPS29-201ENST00000360579 VDAC3Q9Y277 283 aa12.34□□□□□ -0.43
VPS29-201ENST00000360579 C7orf72A4D263 438 aa12.33□□□□□ -0.44
VPS29-201ENST00000360579 TTC36A6NLP5 189 aa12.33□□□□□ -0.44
VPS29-201ENST00000360579 SHISA8B8ZZ34 492 aa12.33□□□□□ -0.44
VPS29-201ENST00000360579 SSX4O60224 188 aa12.33□□□□□ -0.44
VPS29-201ENST00000360579 GCM2O75603 506 aaPredicted RBP12.33□□□□□ -0.44
VPS29-201ENST00000360579 KCNH1O95259 989 aa12.33□□□□□ -0.44
VPS29-201ENST00000360579 RPS17P08708 135 aaKnown RBP12.33□□□□□ -0.44
VPS29-201ENST00000360579 CTAGE8P0CG41 777 aa12.33□□□□□ -0.44
VPS29-201ENST00000360579 BSPH1Q075Z2 132 aa12.33□□□□□ -0.44
VPS29-201ENST00000360579 P2RY6Q15077 328 aa12.33□□□□□ -0.44
VPS29-201ENST00000360579 RNPS1Q15287 305 aaKnown RBP12.33□□□□□ -0.44
VPS29-201ENST00000360579 TAB1Q15750 504 aa12.33□□□□□ -0.44
VPS29-201ENST00000360579 TSNAXIP1Q2TAA8 658 aa12.33□□□□□ -0.44
VPS29-201ENST00000360579 TMEM249Q2WGJ8 235 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms