RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 AQP9O43315 295 aa19.39■□□□□ 0.69
CCDC88B-203ENST00000359902 TNFP01375 233 aa19.39■□□□□ 0.69
CCDC88B-203ENST00000359902 PRG2P13727 222 aa19.39■□□□□ 0.69
CCDC88B-203ENST00000359902 TGM4P49221 684 aa19.39■□□□□ 0.69
CCDC88B-203ENST00000359902 TPBGQ13641 420 aa19.39■□□□□ 0.69
CCDC88B-203ENST00000359902 EIPR1Q53HC9 387 aa19.39■□□□□ 0.69
CCDC88B-203ENST00000359902 ZNF619Q8N2I2 560 aa19.39■□□□□ 0.69
CCDC88B-203ENST00000359902 TPK1Q9H3S4 243 aa19.39■□□□□ 0.69
CCDC88B-203ENST00000359902 ISYNA1Q9NPH2 558 aa19.39■□□□□ 0.69
CCDC88B-203ENST00000359902 SPTBN5Q9NRC6 3674 aaKnown RBP19.39■□□□□ 0.69
CCDC88B-203ENST00000359902 HRASLS2Q9NWW9 162 aa19.39■□□□□ 0.69
CCDC88B-203ENST00000359902 SF3B6Q9Y3B4 125 aaKnown RBP19.39■□□□□ 0.69
CCDC88B-203ENST00000359902 A0A087WV62 115 aa19.39■□□□□ 0.69
CCDC88B-203ENST00000359902 PLOD3O60568 738 aa19.39■□□□□ 0.69
CCDC88B-203ENST00000359902 KCNK2O95069 426 aa19.39■□□□□ 0.69
CCDC88B-203ENST00000359902 GPR75O95800 540 aa19.39■□□□□ 0.69
CCDC88B-203ENST00000359902 RPS4Y1P22090 263 aaKnown RBP19.39■□□□□ 0.69
CCDC88B-203ENST00000359902 CDH11P55287 796 aa19.39■□□□□ 0.69
CCDC88B-203ENST00000359902 UBE2IP63279 158 aaKnown RBP19.39■□□□□ 0.69
CCDC88B-203ENST00000359902 PLK5Q496M5 336 aa19.39■□□□□ 0.69
CCDC88B-203ENST00000359902 EOGTQ5NDL2 527 aa19.39■□□□□ 0.69
CCDC88B-203ENST00000359902 DCST2Q5T1A1 773 aa19.39■□□□□ 0.69
CCDC88B-203ENST00000359902 LSRQ86X29 649 aaPredicted RBP19.39■□□□□ 0.69
CCDC88B-203ENST00000359902 PRSS27Q9BQR3 290 aa19.39■□□□□ 0.69
CCDC88B-203ENST00000359902 POT1Q9NUX5 634 aa19.39■□□□□ 0.69
CCDC88B-203ENST00000359902 CLDND1Q9NY35 253 aa19.39■□□□□ 0.69
CCDC88B-203ENST00000359902 IL20RAQ9UHF4 553 aa19.39■□□□□ 0.69
CCDC88B-203ENST00000359902 KCNE5Q9UJ90 142 aa19.39■□□□□ 0.69
CCDC88B-203ENST00000359902 YARS2Q9Y2Z4 477 aaKnown RBP19.39■□□□□ 0.69
CCDC88B-203ENST00000359902 LRP4O75096 1905 aa19.38■□□□□ 0.69
CCDC88B-203ENST00000359902 RGS5O15539 181 aa19.38■□□□□ 0.69
CCDC88B-203ENST00000359902 STX11O75558 287 aa19.38■□□□□ 0.69
CCDC88B-203ENST00000359902 CDRT1O95170 752 aa19.38■□□□□ 0.69
CCDC88B-203ENST00000359902 SEMA4FO95754 770 aa19.38■□□□□ 0.69
CCDC88B-203ENST00000359902 DLGAP3O95886 979 aa19.38■□□□□ 0.69
CCDC88B-203ENST00000359902 PTNP21246 168 aa19.38■□□□□ 0.69
CCDC88B-203ENST00000359902 NT5EP21589 574 aa19.38■□□□□ 0.69
CCDC88B-203ENST00000359902 PGGHGQ32M88 737 aa19.38■□□□□ 0.69
CCDC88B-203ENST00000359902 C22orf42Q6IC83 251 aa19.38■□□□□ 0.69
CCDC88B-203ENST00000359902 RNF44Q7L0R7 432 aa19.38■□□□□ 0.69
CCDC88B-203ENST00000359902 FRMD1Q8N878 549 aa19.38■□□□□ 0.69
CCDC88B-203ENST00000359902 ZNF485Q8NCK3 441 aa19.38■□□□□ 0.69
CCDC88B-203ENST00000359902 RFKQ969G6 155 aa19.38■□□□□ 0.69
CCDC88B-203ENST00000359902 SLC25A46Q96AG3 418 aa19.38■□□□□ 0.69
CCDC88B-203ENST00000359902 TEX12Q9BXU0 123 aa19.38■□□□□ 0.69
CCDC88B-203ENST00000359902 MED17Q9NVC6 651 aa19.38■□□□□ 0.69
CCDC88B-203ENST00000359902 ERVK13-1Q9NX77 482 aa19.38■□□□□ 0.69
CCDC88B-203ENST00000359902 TRAPPC4Q9Y296 219 aa19.38■□□□□ 0.69
CCDC88B-203ENST00000359902 CDH10Q9Y6N8 788 aa19.38■□□□□ 0.69
CCDC88B-203ENST00000359902 C10orf142B7Z368 130 aa19.37■□□□□ 0.69
CCDC88B-203ENST00000359902 IL1AP01583 271 aa19.37■□□□□ 0.69
CCDC88B-203ENST00000359902 MSL3P1P0C860 447 aa19.37■□□□□ 0.69
CCDC88B-203ENST00000359902 CD79BP40259 229 aa19.37■□□□□ 0.69
CCDC88B-203ENST00000359902 SHC2P98077 582 aa19.37■□□□□ 0.69
CCDC88B-203ENST00000359902 MXD1Q05195 221 aa19.37■□□□□ 0.69
CCDC88B-203ENST00000359902 MGAT2Q10469 447 aa19.37■□□□□ 0.69
CCDC88B-203ENST00000359902 PRICKLE4Q2TBC4 344 aa19.37■□□□□ 0.69
CCDC88B-203ENST00000359902 MANEAQ5SRI9 462 aa19.37■□□□□ 0.69
CCDC88B-203ENST00000359902 ABI3BPQ7Z7G0 1075 aa19.37■□□□□ 0.69
CCDC88B-203ENST00000359902 ASB15Q8WXK1 588 aa19.37■□□□□ 0.69
CCDC88B-203ENST00000359902 ARHGAP9Q9BRR9 750 aa19.37■□□□□ 0.69
CCDC88B-203ENST00000359902 CCDC32Q9BV29 185 aa19.37■□□□□ 0.69
CCDC88B-203ENST00000359902 DUSP22Q9NRW4 184 aa19.37■□□□□ 0.69
CCDC88B-203ENST00000359902 SATB2Q9UPW6 733 aa19.37■□□□□ 0.69
CCDC88B-203ENST00000359902 SPACA6W5XKT8 324 aa19.37■□□□□ 0.69
CCDC88B-203ENST00000359902 A0A0J9YY10 115 aa19.37■□□□□ 0.69
CCDC88B-203ENST00000359902 LRRTM2O43300 516 aa19.37■□□□□ 0.69
CCDC88B-203ENST00000359902 GALR3O60755 368 aaPredicted RBP19.37■□□□□ 0.69
CCDC88B-203ENST00000359902 DBIP07108 87 aaKnown RBP19.37■□□□□ 0.69
CCDC88B-203ENST00000359902 CELA2BP08218 269 aaPredicted RBP19.37■□□□□ 0.69
CCDC88B-203ENST00000359902 GKN3PP0CG01 181 aa19.37■□□□□ 0.69
CCDC88B-203ENST00000359902 HTR2AP28223 471 aa19.37■□□□□ 0.69
CCDC88B-203ENST00000359902 LTBRP36941 435 aa19.37■□□□□ 0.69
CCDC88B-203ENST00000359902 RPS25P62851 125 aaKnown RBP19.37■□□□□ 0.69
CCDC88B-203ENST00000359902 ZNF542PQ5EBM4 170 aa19.37■□□□□ 0.69
CCDC88B-203ENST00000359902 GDPD3Q7L5L3 318 aa19.37■□□□□ 0.69
CCDC88B-203ENST00000359902 LHFPL3Q86UP9 236 aa19.37■□□□□ 0.69
CCDC88B-203ENST00000359902 RANBP3LQ86VV4 465 aaPredicted RBP19.37■□□□□ 0.69
CCDC88B-203ENST00000359902 CDRT4Q8N9R6 151 aa19.37■□□□□ 0.69
CCDC88B-203ENST00000359902 OR4F15Q8NGB8 312 aa19.37■□□□□ 0.69
CCDC88B-203ENST00000359902 GPR151Q8TDV0 419 aa19.37■□□□□ 0.69
CCDC88B-203ENST00000359902 HMGB4Q8WW32 186 aa19.37■□□□□ 0.69
CCDC88B-203ENST00000359902 HPS1Q92902 700 aa19.37■□□□□ 0.69
CCDC88B-203ENST00000359902 SAMD8Q96LT4 415 aa19.37■□□□□ 0.69
CCDC88B-203ENST00000359902 RERGLQ9H628 205 aa19.37■□□□□ 0.69
CCDC88B-203ENST00000359902 C8orf33Q9H7E9 229 aaPredicted RBP19.37■□□□□ 0.69
CCDC88B-203ENST00000359902 TRPV5Q9NQA5 729 aa19.37■□□□□ 0.69
CCDC88B-203ENST00000359902 CD207Q9UJ71 328 aa19.37■□□□□ 0.69
CCDC88B-203ENST00000359902 COL4A2P08572 1712 aa19.37■□□□□ 0.69
CCDC88B-203ENST00000359902 IQCMA0A1B0GVH7 501 aa19.36■□□□□ 0.69
CCDC88B-203ENST00000359902 TRAPPC13A5PLN9 417 aa19.36■□□□□ 0.69
CCDC88B-203ENST00000359902 FAM221BA6H8Z2 402 aa19.36■□□□□ 0.69
CCDC88B-203ENST00000359902 PEX12O00623 359 aa19.36■□□□□ 0.69
CCDC88B-203ENST00000359902 SLC2A10O95528 541 aa19.36■□□□□ 0.69
CCDC88B-203ENST00000359902 NID1P14543 1247 aa19.36■□□□□ 0.69
CCDC88B-203ENST00000359902 RABIFP47224 123 aa19.36■□□□□ 0.69
CCDC88B-203ENST00000359902 PPP1CAP62136 330 aa19.36■□□□□ 0.69
CCDC88B-203ENST00000359902 RUNX1T1Q06455 604 aa19.36■□□□□ 0.69
CCDC88B-203ENST00000359902 MRPL2Q5T653 305 aaKnown RBP19.36■□□□□ 0.69
CCDC88B-203ENST00000359902 CA13Q8N1Q1 262 aa19.36■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms