RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 SCO2O43819 266 aa20.27■□□□□ 0.84
SHMT1-203ENST00000354098 SLC28A2O43868 658 aa20.27■□□□□ 0.84
SHMT1-203ENST00000354098 TBXA2RP21731 343 aa20.27■□□□□ 0.84
SHMT1-203ENST00000354098 RNF144AP50876 292 aaPredicted RBP20.27■□□□□ 0.84
SHMT1-203ENST00000354098 GAS1P54826 345 aa20.27■□□□□ 0.84
SHMT1-203ENST00000354098 FOXO1Q12778 655 aa20.27■□□□□ 0.84
SHMT1-203ENST00000354098 SNTA1Q13424 505 aa20.27■□□□□ 0.84
SHMT1-203ENST00000354098 GCNT6Q5T4J0 391 aa20.27■□□□□ 0.84
SHMT1-203ENST00000354098 C8orf82Q6P1X6 216 aaPredicted RBP20.27■□□□□ 0.84
SHMT1-203ENST00000354098 HMGN2P46Q86SG4 172 aa20.27■□□□□ 0.84
SHMT1-203ENST00000354098 MARCH3Q86UD3 253 aa20.27■□□□□ 0.84
SHMT1-203ENST00000354098 OR10A6Q8NH74 314 aa20.27■□□□□ 0.84
SHMT1-203ENST00000354098 JSRP1Q96MG2 331 aaPredicted RBP20.27■□□□□ 0.84
SHMT1-203ENST00000354098 FRMD6Q96NE9 622 aa20.27■□□□□ 0.84
SHMT1-203ENST00000354098 SLC38A1Q9H2H9 487 aa20.27■□□□□ 0.84
SHMT1-203ENST00000354098 PIF1Q9H611 641 aa20.27■□□□□ 0.84
SHMT1-203ENST00000354098 UBQLN4Q9NRR5 601 aa20.27■□□□□ 0.84
SHMT1-203ENST00000354098 THUMPD1Q9NXG2 353 aaKnown RBP20.27■□□□□ 0.84
SHMT1-203ENST00000354098 HRH3Q9Y5N1 445 aa20.27■□□□□ 0.84
SHMT1-203ENST00000354098 SEC23IPQ9Y6Y8 1000 aaKnown RBP20.27■□□□□ 0.84
SHMT1-203ENST00000354098 CENPVL1A0A0U1RR11 272 aa20.26■□□□□ 0.83
SHMT1-203ENST00000354098 NPIPB9F8W1W9 429 aa20.26■□□□□ 0.83
SHMT1-203ENST00000354098 TRIM3O75382 744 aaPredicted RBP20.26■□□□□ 0.83
SHMT1-203ENST00000354098 C1QL1O75973 258 aa20.26■□□□□ 0.83
SHMT1-203ENST00000354098 LCN1P31025 176 aa20.26■□□□□ 0.83
SHMT1-203ENST00000354098 DCTP40126 519 aa20.26■□□□□ 0.83
SHMT1-203ENST00000354098 RNFT1Q5M7Z0 435 aa20.26■□□□□ 0.83
SHMT1-203ENST00000354098 TBCELQ5QJ74 424 aa20.26■□□□□ 0.83
SHMT1-203ENST00000354098 FNDC7Q5VTL7 733 aa20.26■□□□□ 0.83
SHMT1-203ENST00000354098 SLC30A6Q6NXT4 461 aa20.26■□□□□ 0.83
SHMT1-203ENST00000354098 HACD2Q6Y1H2 254 aa20.26■□□□□ 0.83
SHMT1-203ENST00000354098 SNRNP40Q96DI7 357 aaKnown RBP20.26■□□□□ 0.83
SHMT1-203ENST00000354098 TMEM19Q96HH6 336 aa20.26■□□□□ 0.83
SHMT1-203ENST00000354098 NSL1Q96IY1 281 aa20.26■□□□□ 0.83
SHMT1-203ENST00000354098 SAP130Q9H0E3 1048 aa20.26■□□□□ 0.83
SHMT1-203ENST00000354098 QRSL1Q9H0R6 528 aaKnown RBP20.26■□□□□ 0.83
SHMT1-203ENST00000354098 A4GALTQ9NPC4 353 aa20.26■□□□□ 0.83
SHMT1-203ENST00000354098 ABCG2Q9UNQ0 655 aa20.26■□□□□ 0.83
SHMT1-203ENST00000354098 SPTA1P02549 2419 aa20.26■□□□□ 0.83
SHMT1-203ENST00000354098 TTLL8A6PVC2 850 aa20.26■□□□□ 0.83
SHMT1-203ENST00000354098 T-ENOLP0DO92 83 aa20.26■□□□□ 0.83
SHMT1-203ENST00000354098 ESRRAP11474 423 aaPredicted RBP20.26■□□□□ 0.83
SHMT1-203ENST00000354098 GZMMP51124 257 aa20.26■□□□□ 0.83
SHMT1-203ENST00000354098 ATP12AP54707 1039 aa20.26■□□□□ 0.83
SHMT1-203ENST00000354098 MLLT10P55197 1068 aa20.26■□□□□ 0.83
SHMT1-203ENST00000354098 RPS26P11Q5JNZ5 115 aaPredicted RBP20.26■□□□□ 0.83
SHMT1-203ENST00000354098 AP1ARQ63HQ0 302 aa20.26■□□□□ 0.83
SHMT1-203ENST00000354098 LRRC74BQ6ZQY2 392 aa20.26■□□□□ 0.83
SHMT1-203ENST00000354098 PTOV1Q86YD1 416 aa20.26■□□□□ 0.83
SHMT1-203ENST00000354098 ZFP62Q8NB50 900 aaPredicted RBP20.26■□□□□ 0.83
SHMT1-203ENST00000354098 FAM98AQ8NCA5 519 aaKnown RBP20.26■□□□□ 0.83
SHMT1-203ENST00000354098 SH3GL1Q99961 368 aa20.26■□□□□ 0.83
SHMT1-203ENST00000354098 CMTM6Q9NX76 183 aa20.26■□□□□ 0.83
SHMT1-203ENST00000354098 KIAA0513O60268 411 aa20.25■□□□□ 0.83
SHMT1-203ENST00000354098 UGT2B17O75795 530 aa20.25■□□□□ 0.83
SHMT1-203ENST00000354098 WISP2O76076 250 aa20.25■□□□□ 0.83
SHMT1-203ENST00000354098 SNX4O95219 450 aa20.25■□□□□ 0.83
SHMT1-203ENST00000354098 NGFRP08138 427 aa20.25■□□□□ 0.83
SHMT1-203ENST00000354098 ARAFP10398 606 aa20.25■□□□□ 0.83
SHMT1-203ENST00000354098 HPCAP84074 193 aa20.25■□□□□ 0.83
SHMT1-203ENST00000354098 MAPK14Q16539 360 aa20.25■□□□□ 0.83
SHMT1-203ENST00000354098 CYP51A1Q16850 503 aa20.25■□□□□ 0.83
SHMT1-203ENST00000354098 OR5M10Q6IEU7 315 aa20.25■□□□□ 0.83
SHMT1-203ENST00000354098 PACS2Q86VP3 889 aa20.25■□□□□ 0.83
SHMT1-203ENST00000354098 SLC15A3Q8IY34 581 aa20.25■□□□□ 0.83
SHMT1-203ENST00000354098 ZNF619Q8N2I2 560 aa20.25■□□□□ 0.83
SHMT1-203ENST00000354098 ZNF843Q8N446 348 aa20.25■□□□□ 0.83
SHMT1-203ENST00000354098 GATSQ8NAP1 163 aa20.25■□□□□ 0.83
SHMT1-203ENST00000354098 NFKBIDQ8NI38 313 aa20.25■□□□□ 0.83
SHMT1-203ENST00000354098 HOPXQ9BPY8 73 aaPredicted RBP20.25■□□□□ 0.83
SHMT1-203ENST00000354098 ECSITQ9BQ95 431 aa20.25■□□□□ 0.83
SHMT1-203ENST00000354098 TTTY12Q9BZ98 90 aa20.25■□□□□ 0.83
SHMT1-203ENST00000354098 TBL1XR1Q9BZK7 514 aa20.25■□□□□ 0.83
SHMT1-203ENST00000354098 POLE3Q9NRF9 147 aa20.25■□□□□ 0.83
SHMT1-203ENST00000354098 USP22Q9UPT9 525 aa20.25■□□□□ 0.83
SHMT1-203ENST00000354098 WIF1Q9Y5W5 379 aa20.25■□□□□ 0.83
SHMT1-203ENST00000354098 LRRC3CA6NJW4 275 aa20.24■□□□□ 0.83
SHMT1-203ENST00000354098 B4DXG7 233 aa20.24■□□□□ 0.83
SHMT1-203ENST00000354098 ALG1L2C9J202 215 aa20.24■□□□□ 0.83
SHMT1-203ENST00000354098 SCDO00767 359 aa20.24■□□□□ 0.83
SHMT1-203ENST00000354098 GNB5O14775 395 aa20.24■□□□□ 0.83
SHMT1-203ENST00000354098 SUV39H1O43463 412 aa20.24■□□□□ 0.83
SHMT1-203ENST00000354098 GUSBP08236 651 aa20.24■□□□□ 0.83
SHMT1-203ENST00000354098 RFPL3SP0C7P2 107 aa20.24■□□□□ 0.83
SHMT1-203ENST00000354098 HPGDP15428 266 aa20.24■□□□□ 0.83
SHMT1-203ENST00000354098 INAQ16352 499 aa20.24■□□□□ 0.83
SHMT1-203ENST00000354098 KLHL26Q53HC5 615 aa20.24■□□□□ 0.83
SHMT1-203ENST00000354098 PDZK1Q5T2W1 519 aa20.24■□□□□ 0.83
SHMT1-203ENST00000354098 WDSUB1Q8N9V3 476 aa20.24■□□□□ 0.83
SHMT1-203ENST00000354098 DUSP19Q8WTR2 217 aa20.24■□□□□ 0.83
SHMT1-203ENST00000354098 GNRHR2Q96P88 292 aa20.24■□□□□ 0.83
SHMT1-203ENST00000354098 TREX2Q9BQ50 279 aaPredicted RBP20.24■□□□□ 0.83
SHMT1-203ENST00000354098 HOXD1Q9GZZ0 328 aa20.24■□□□□ 0.83
SHMT1-203ENST00000354098 TMEM38AQ9H6F2 299 aa20.24■□□□□ 0.83
SHMT1-203ENST00000354098 GMPR2Q9P2T1 348 aaKnown RBP20.24■□□□□ 0.83
SHMT1-203ENST00000354098 NINQ8N4C6 2090 aa20.23■□□□□ 0.83
SHMT1-203ENST00000354098 TMEM247A6NEH6 219 aa20.23■□□□□ 0.83
SHMT1-203ENST00000354098 CCT8L1PA6NM43 557 aa20.23■□□□□ 0.83
SHMT1-203ENST00000354098 FAM166BA8MTA8 275 aa20.23■□□□□ 0.83
SHMT1-203ENST00000354098 ANGPTL1O95841 491 aa20.23■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms