RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 DUSP19Q8WTR2 217 aa7.85□□□□□ -1.15
HMGB1-203ENST00000341423 PCDHGA3Q9Y5H0 932 aa7.85□□□□□ -1.15
HMGB1-203ENST00000341423 NPFFR2Q9Y5X5 522 aa7.85□□□□□ -1.15
HMGB1-203ENST00000341423 LIPGQ9Y5X9 500 aa7.85□□□□□ -1.15
HMGB1-203ENST00000341423 OTOGLQ3ZCN5 2332 aa7.85□□□□□ -1.15
HMGB1-203ENST00000341423 SHOXO15266 292 aa7.84□□□□□ -1.15
HMGB1-203ENST00000341423 PDYNP01213 254 aa7.84□□□□□ -1.15
HMGB1-203ENST00000341423 UROSP10746 265 aa7.84□□□□□ -1.15
HMGB1-203ENST00000341423 RPS2P15880 293 aaKnown RBP7.84□□□□□ -1.15
HMGB1-203ENST00000341423 GADD45AP24522 165 aa7.84□□□□□ -1.15
HMGB1-203ENST00000341423 DSTNP60981 165 aa7.84□□□□□ -1.15
HMGB1-203ENST00000341423 NAAAQ02083 359 aa7.84□□□□□ -1.15
HMGB1-203ENST00000341423 AGBL4Q5VU57 503 aa7.84□□□□□ -1.15
HMGB1-203ENST00000341423 ATG9BQ674R7 924 aa7.84□□□□□ -1.15
HMGB1-203ENST00000341423 HACD2Q6Y1H2 254 aa7.84□□□□□ -1.15
HMGB1-203ENST00000341423 CXXC5Q7LFL8 322 aaKnown RBP7.84□□□□□ -1.15
HMGB1-203ENST00000341423 OR7G1Q8NGA0 311 aa7.84□□□□□ -1.15
HMGB1-203ENST00000341423 OR8B3Q8NGG8 313 aa7.84□□□□□ -1.15
HMGB1-203ENST00000341423 OR5K2Q8NHB8 316 aa7.84□□□□□ -1.15
HMGB1-203ENST00000341423 DYNLRB2Q8TF09 96 aa7.84□□□□□ -1.15
HMGB1-203ENST00000341423 OSTF1Q92882 214 aa7.84□□□□□ -1.15
HMGB1-203ENST00000341423 LRR1Q96L50 414 aa7.84□□□□□ -1.15
HMGB1-203ENST00000341423 OR8B2Q96RD0 313 aa7.84□□□□□ -1.15
HMGB1-203ENST00000341423 KATNBL1Q9H079 304 aa7.84□□□□□ -1.15
HMGB1-203ENST00000341423 IL21Q9HBE4 155 aa7.84□□□□□ -1.15
HMGB1-203ENST00000341423 A0A1B0GTH9 108 aa7.84□□□□□ -1.15
HMGB1-203ENST00000341423 ZMPSTE24O75844 475 aa7.84□□□□□ -1.15
HMGB1-203ENST00000341423 VAMP5O95183 116 aa7.84□□□□□ -1.15
HMGB1-203ENST00000341423 ETFAP13804 333 aa7.84□□□□□ -1.15
HMGB1-203ENST00000341423 CLK1P49759 484 aaKnown RBP7.84□□□□□ -1.15
HMGB1-203ENST00000341423 PRSS36Q5K4E3 855 aa7.84□□□□□ -1.15
HMGB1-203ENST00000341423 DCBLD1Q8N8Z6 715 aa7.84□□□□□ -1.15
HMGB1-203ENST00000341423 ISL2Q96A47 359 aa7.84□□□□□ -1.15
HMGB1-203ENST00000341423 ADGRG7Q96K78 797 aa7.84□□□□□ -1.15
HMGB1-203ENST00000341423 ZNF582Q96NG8 517 aaPredicted RBP7.84□□□□□ -1.15
HMGB1-203ENST00000341423 ASF1BQ9NVP2 202 aa7.84□□□□□ -1.15
HMGB1-203ENST00000341423 CBLCQ9ULV8 474 aa7.84□□□□□ -1.15
HMGB1-203ENST00000341423 RNF115Q9Y4L5 304 aa7.84□□□□□ -1.15
HMGB1-203ENST00000341423 MAGEB17A8MXT2 336 aa7.84□□□□□ -1.15
HMGB1-203ENST00000341423 NSA2O95478 260 aaKnown RBP7.84□□□□□ -1.15
HMGB1-203ENST00000341423 ZNF3P17036 446 aa7.84□□□□□ -1.15
HMGB1-203ENST00000341423 SERPINB5P36952 375 aa7.84□□□□□ -1.15
HMGB1-203ENST00000341423 MAGEA6P43360 314 aa7.84□□□□□ -1.15
HMGB1-203ENST00000341423 ZNF81P51508 661 aa7.84□□□□□ -1.15
HMGB1-203ENST00000341423 EDDM3BP56851 147 aa7.84□□□□□ -1.15
HMGB1-203ENST00000341423 SLC35F1Q5T1Q4 408 aa7.84□□□□□ -1.15
HMGB1-203ENST00000341423 TMEM214Q6NUQ4 689 aaKnown RBP7.84□□□□□ -1.15
HMGB1-203ENST00000341423 TMEM246Q9BRR3 403 aa7.84□□□□□ -1.15
HMGB1-203ENST00000341423 ROPN1BQ9BZX4 212 aaPredicted RBP7.84□□□□□ -1.15
HMGB1-203ENST00000341423 OR51V1Q9H2C8 321 aa7.84□□□□□ -1.15
HMGB1-203ENST00000341423 ROPN1Q9HAT0 212 aaPredicted RBP7.84□□□□□ -1.15
HMGB1-203ENST00000341423 MRPL39Q9NYK5 338 aaKnown RBP7.84□□□□□ -1.15
HMGB1-203ENST00000341423 COQ4Q9Y3A0 265 aa7.84□□□□□ -1.15
HMGB1-203ENST00000341423 BIRC5O15392 142 aa7.84□□□□□ -1.15
HMGB1-203ENST00000341423 LDB3O75112 727 aa7.84□□□□□ -1.15
HMGB1-203ENST00000341423 DEAF1O75398 565 aaPredicted RBP7.84□□□□□ -1.15
HMGB1-203ENST00000341423 OR4F21O95013 312 aa7.84□□□□□ -1.15
HMGB1-203ENST00000341423 IGHG1P01857 330 aa7.84□□□□□ -1.15
HMGB1-203ENST00000341423 YES1P07947 543 aa7.84□□□□□ -1.15
HMGB1-203ENST00000341423 FCGR1AP12314 374 aa7.84□□□□□ -1.15
HMGB1-203ENST00000341423 UQCRC2P22695 453 aa7.84□□□□□ -1.15
HMGB1-203ENST00000341423 CDC25BP30305 580 aa7.84□□□□□ -1.15
HMGB1-203ENST00000341423 SOX18P35713 384 aa7.84□□□□□ -1.15
HMGB1-203ENST00000341423 DBPQ10586 325 aaPredicted RBP7.84□□□□□ -1.15
HMGB1-203ENST00000341423 MRPL58Q14197 206 aaKnown RBP7.84□□□□□ -1.15
HMGB1-203ENST00000341423 PSD4Q8NDX1 1056 aa7.84□□□□□ -1.15
HMGB1-203ENST00000341423 FAM168AQ92567 244 aa7.84□□□□□ -1.15
HMGB1-203ENST00000341423 OR4K3Q96R72 315 aa7.84□□□□□ -1.15
HMGB1-203ENST00000341423 DCTN5Q9BTE1 182 aa7.84□□□□□ -1.15
HMGB1-203ENST00000341423 DPAGT1Q9H3H5 408 aa7.84□□□□□ -1.15
HMGB1-203ENST00000341423 TESQ9UGI8 421 aaKnown RBP7.84□□□□□ -1.15
HMGB1-203ENST00000341423 DHDHQ9UQ10 334 aa7.84□□□□□ -1.15
HMGB1-203ENST00000341423 C5P01031 1676 aa7.84□□□□□ -1.16
HMGB1-203ENST00000341423 IRGMA1A4Y4 181 aa7.83□□□□□ -1.16
HMGB1-203ENST00000341423 AGAP5A6NIR3 686 aa7.83□□□□□ -1.16
HMGB1-203ENST00000341423 FMO3P31513 532 aa7.83□□□□□ -1.16
HMGB1-203ENST00000341423 HTR5AP47898 357 aa7.83□□□□□ -1.16
HMGB1-203ENST00000341423 HLCSP50747 726 aa7.83□□□□□ -1.16
HMGB1-203ENST00000341423 TRAP1Q12931 704 aaKnown RBP7.83□□□□□ -1.16
HMGB1-203ENST00000341423 IGFBP7Q16270 282 aa7.83□□□□□ -1.16
HMGB1-203ENST00000341423 SWT1Q5T5J6 900 aaKnown RBP7.83□□□□□ -1.16
HMGB1-203ENST00000341423 C5orf46Q6UWT4 87 aa7.83□□□□□ -1.16
HMGB1-203ENST00000341423 TMPRSS11AQ6ZMR5 421 aa7.83□□□□□ -1.16
HMGB1-203ENST00000341423 MICU2Q8IYU8 434 aa7.83□□□□□ -1.16
HMGB1-203ENST00000341423 RBM15BQ8NDT2 890 aaKnown RBP7.83□□□□□ -1.16
HMGB1-203ENST00000341423 HOXB13Q92826 284 aaPredicted RBP7.83□□□□□ -1.16
HMGB1-203ENST00000341423 PIWIL1Q96J94 861 aaKnown RBP7.83□□□□□ -1.16
HMGB1-203ENST00000341423 CHP1Q99653 195 aa7.83□□□□□ -1.16
HMGB1-203ENST00000341423 GRHL1Q9NZI5 618 aa7.83□□□□□ -1.16
HMGB1-203ENST00000341423 IGHV5-10-1A0A0J9YXX1 117 aa7.83□□□□□ -1.16
HMGB1-203ENST00000341423 CD8B2A6NJW9 211 aa7.83□□□□□ -1.16
HMGB1-203ENST00000341423 MRASO14807 208 aa7.83□□□□□ -1.16
HMGB1-203ENST00000341423 HCRTR1O43613 425 aa7.83□□□□□ -1.16
HMGB1-203ENST00000341423 CERS1P27544 350 aa7.83□□□□□ -1.16
HMGB1-203ENST00000341423 MRPS25P82663 173 aaKnown RBP7.83□□□□□ -1.16
HMGB1-203ENST00000341423 MPP1Q00013 466 aa7.83□□□□□ -1.16
HMGB1-203ENST00000341423 PPA1Q15181 289 aa7.83□□□□□ -1.16
HMGB1-203ENST00000341423 SHEQ5VZ18 495 aa7.83□□□□□ -1.16
HMGB1-203ENST00000341423 CYP2R1Q6VVX0 501 aa7.83□□□□□ -1.16
HMGB1-203ENST00000341423 NET1Q7Z628 596 aaPredicted RBP7.83□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms