RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 C16orf78Q8WTQ4 265 aa13.56□□□□□ -0.24
COL7A1-201ENST00000328333 FAM83CQ9BQN1 747 aa13.56□□□□□ -0.24
COL7A1-201ENST00000328333 LDAHQ9H6V9 325 aa13.56□□□□□ -0.24
COL7A1-201ENST00000328333 CHRNA9Q9UGM1 479 aa13.56□□□□□ -0.24
COL7A1-201ENST00000328333 MED6O75586 246 aa13.56□□□□□ -0.24
COL7A1-201ENST00000328333 LALBAP00709 142 aa13.56□□□□□ -0.24
COL7A1-201ENST00000328333 PGCP20142 388 aa13.56□□□□□ -0.24
COL7A1-201ENST00000328333 PRKACGP22612 351 aa13.56□□□□□ -0.24
COL7A1-201ENST00000328333 CRABP1P29762 137 aa13.56□□□□□ -0.24
COL7A1-201ENST00000328333 SERINC5Q86VE9 423 aa13.56□□□□□ -0.24
COL7A1-201ENST00000328333 GKN2Q86XP6 184 aa13.56□□□□□ -0.24
COL7A1-201ENST00000328333 OR5L2Q8NGL0 311 aa13.56□□□□□ -0.24
COL7A1-201ENST00000328333 B3GALT1Q9Y5Z6 326 aa13.56□□□□□ -0.24
COL7A1-201ENST00000328333 INHAP05111 366 aa13.55□□□□□ -0.24
COL7A1-201ENST00000328333 HBMQ6B0K9 141 aa13.55□□□□□ -0.24
COL7A1-201ENST00000328333 IL17RCQ8NAC3 791 aa13.55□□□□□ -0.24
COL7A1-201ENST00000328333 TFGQ92734 400 aaPredicted RBP13.55□□□□□ -0.24
COL7A1-201ENST00000328333 TRMT2BQ96GJ1 504 aaKnown RBP13.55□□□□□ -0.24
COL7A1-201ENST00000328333 DAP3P51398 398 aaKnown RBP13.55□□□□□ -0.24
COL7A1-201ENST00000328333 OR6C4Q8NGE1 309 aa13.55□□□□□ -0.24
COL7A1-201ENST00000328333 ECM29Q5VYK3 1845 aa13.55□□□□□ -0.24
COL7A1-201ENST00000328333 ANKRD36A6QL64 1941 aa13.55□□□□□ -0.24
COL7A1-201ENST00000328333 F6UZH7 168 aa13.55□□□□□ -0.24
COL7A1-201ENST00000328333 CD1DP15813 335 aa13.55□□□□□ -0.24
COL7A1-201ENST00000328333 SOX2P48431 317 aa13.55□□□□□ -0.24
COL7A1-201ENST00000328333 CLDN22Q8N7P3 220 aa13.55□□□□□ -0.24
COL7A1-201ENST00000328333 TAS2R16Q9NYV7 291 aa13.55□□□□□ -0.24
COL7A1-201ENST00000328333 ENPP4Q9Y6X5 453 aa13.55□□□□□ -0.24
COL7A1-201ENST00000328333 MYO7BQ6PIF6 2116 aa13.55□□□□□ -0.24
COL7A1-201ENST00000328333 ACRV1P26436 265 aa13.55□□□□□ -0.24
COL7A1-201ENST00000328333 EEF1DP3Q658K8 133 aa13.55□□□□□ -0.24
COL7A1-201ENST00000328333 PARP16Q8N5Y8 322 aa13.55□□□□□ -0.24
COL7A1-201ENST00000328333 OR52P1PQ8NH57 321 aa13.55□□□□□ -0.24
COL7A1-201ENST00000328333 OCSTAMPQ9BR26 566 aa13.55□□□□□ -0.24
COL7A1-201ENST00000328333 PEX12O00623 359 aa13.55□□□□□ -0.24
COL7A1-201ENST00000328333 SLC2A12Q8TD20 617 aa13.55□□□□□ -0.24
COL7A1-201ENST00000328333 DDX1Q92499 740 aaKnown RBP13.55□□□□□ -0.24
COL7A1-201ENST00000328333 DPEP3Q9H4B8 488 aa13.55□□□□□ -0.24
COL7A1-201ENST00000328333 PATZ1Q9HBE1 687 aaKnown RBP13.55□□□□□ -0.24
COL7A1-201ENST00000328333 LOC730098B7Z3J9 87 aa13.55□□□□□ -0.24
COL7A1-201ENST00000328333 SDHDO14521 159 aa13.55□□□□□ -0.24
COL7A1-201ENST00000328333 MAGEB4O15481 346 aaPredicted RBP13.55□□□□□ -0.24
COL7A1-201ENST00000328333 GIFP27352 417 aa13.55□□□□□ -0.24
COL7A1-201ENST00000328333 FAM124AQ86V42 546 aa13.55□□□□□ -0.24
COL7A1-201ENST00000328333 SLC43A2Q8N370 569 aa13.55□□□□□ -0.24
COL7A1-201ENST00000328333 OR7G3Q8NG95 312 aa13.55□□□□□ -0.24
COL7A1-201ENST00000328333 GATA6Q92908 595 aa13.55□□□□□ -0.24
COL7A1-201ENST00000328333 ARPC5LQ9BPX5 153 aa13.55□□□□□ -0.24
COL7A1-201ENST00000328333 C17orf62Q9BQA9 187 aa13.55□□□□□ -0.24
COL7A1-201ENST00000328333 MCOLN1Q9GZU1 580 aa13.55□□□□□ -0.24
COL7A1-201ENST00000328333 UGT2A1Q9Y4X1 527 aa13.55□□□□□ -0.24
COL7A1-201ENST00000328333 OTOL1A6NHN0 477 aaPredicted RBP13.55□□□□□ -0.24
COL7A1-201ENST00000328333 OLFM2O95897 454 aa13.55□□□□□ -0.24
COL7A1-201ENST00000328333 LCKP06239 509 aa13.55□□□□□ -0.24
COL7A1-201ENST00000328333 KCNRGQ8N5I3 272 aa13.55□□□□□ -0.24
COL7A1-201ENST00000328333 DCAF13Q9NV06 445 aaKnown RBP13.55□□□□□ -0.24
COL7A1-201ENST00000328333 ZDBF2Q9HCK1 2354 aa13.54□□□□□ -0.24
COL7A1-201ENST00000328333 CPED1A4D0V7 1026 aa13.54□□□□□ -0.24
COL7A1-201ENST00000328333 SLC38A8A6NNN8 435 aa13.54□□□□□ -0.24
COL7A1-201ENST00000328333 B3GALNT1O75752 331 aa13.54□□□□□ -0.24
COL7A1-201ENST00000328333 OR12D1P0DN82 309 aa13.54□□□□□ -0.24
COL7A1-201ENST00000328333 IL1R2P27930 398 aa13.54□□□□□ -0.24
COL7A1-201ENST00000328333 PDGFRLQ15198 375 aa13.54□□□□□ -0.24
COL7A1-201ENST00000328333 ENPP6Q6UWR7 440 aa13.54□□□□□ -0.24
COL7A1-201ENST00000328333 RHOXF1Q8NHV9 184 aa13.54□□□□□ -0.24
COL7A1-201ENST00000328333 RAB7BQ96AH8 199 aa13.54□□□□□ -0.24
COL7A1-201ENST00000328333 SLC25A21Q9BQT8 299 aaPredicted RBP13.54□□□□□ -0.24
COL7A1-201ENST00000328333 NCDNQ9UBB6 729 aa13.54□□□□□ -0.24
COL7A1-201ENST00000328333 ROBO1Q9Y6N7 1651 aa13.54□□□□□ -0.24
COL7A1-201ENST00000328333 OR5K4A6NMS3 321 aa13.54□□□□□ -0.24
COL7A1-201ENST00000328333 ARPC1BO15143 372 aaKnown RBP13.54□□□□□ -0.24
COL7A1-201ENST00000328333 H3F3AP84243 136 aa13.54□□□□□ -0.24
COL7A1-201ENST00000328333 GALK2Q01415 458 aa13.54□□□□□ -0.24
COL7A1-201ENST00000328333 PPP1R3FQ6ZSY5 799 aaPredicted RBP13.54□□□□□ -0.24
COL7A1-201ENST00000328333 MRPL10Q7Z7H8 261 aaKnown RBP13.54□□□□□ -0.24
COL7A1-201ENST00000328333 PITX2Q99697 317 aa13.54□□□□□ -0.24
COL7A1-201ENST00000328333 PSD2Q9BQI7 771 aa13.54□□□□□ -0.24
COL7A1-201ENST00000328333 NAA10P41227 235 aaPredicted RBP13.54□□□□□ -0.24
COL7A1-201ENST00000328333 ARHGAP40Q5TG30 622 aa13.54□□□□□ -0.24
COL7A1-201ENST00000328333 SDHAF4Q5VUM1 108 aa13.54□□□□□ -0.24
COL7A1-201ENST00000328333 OR10K2Q6IF99 312 aa13.54□□□□□ -0.24
COL7A1-201ENST00000328333 REM2Q8IYK8 340 aaPredicted RBP13.54□□□□□ -0.24
COL7A1-201ENST00000328333 OR6V1Q8N148 313 aa13.54□□□□□ -0.24
COL7A1-201ENST00000328333 OPA3Q9H6K4 179 aa13.54□□□□□ -0.24
COL7A1-201ENST00000328333 MTMR11A4FU01 709 aa13.54□□□□□ -0.24
COL7A1-201ENST00000328333 LRIT2A6NDA9 550 aa13.54□□□□□ -0.24
COL7A1-201ENST00000328333 UBL3O95164 117 aa13.54□□□□□ -0.24
COL7A1-201ENST00000328333 ASGR2P07307 311 aa13.54□□□□□ -0.24
COL7A1-201ENST00000328333 PRAP1Q96NZ9 151 aa13.54□□□□□ -0.24
COL7A1-201ENST00000328333 DVL2O14641 736 aa13.54□□□□□ -0.24
COL7A1-201ENST00000328333 CXCL14O95715 111 aa13.54□□□□□ -0.24
COL7A1-201ENST00000328333 PPP1R35Q8TAP8 253 aa13.54□□□□□ -0.24
COL7A1-201ENST00000328333 RNF170Q96K19 258 aa13.54□□□□□ -0.24
COL7A1-201ENST00000328333 SIGLEC10Q96LC7 697 aa13.54□□□□□ -0.24
COL7A1-201ENST00000328333 PLEKHJ1Q9NW61 149 aa13.54□□□□□ -0.24
COL7A1-201ENST00000328333 MYO16Q9Y6X6 1858 aa13.54□□□□□ -0.24
COL7A1-201ENST00000328333 MRC1P22897 1456 aa13.54□□□□□ -0.24
COL7A1-201ENST00000328333 SYT7O43581 403 aa13.54□□□□□ -0.24
COL7A1-201ENST00000328333 SNCGO76070 127 aa13.54□□□□□ -0.24
COL7A1-201ENST00000328333 DRD5P21918 477 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms