RNA–Protein interactions for RNA: ENST00000323701.10

USP39-201, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,177 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-201ENST00000323701 THBS1P07996 1170 aa17.04■□□□□ 0.32
USP39-201ENST00000323701 RYKP34925 604 aa17.04■□□□□ 0.32
USP39-201ENST00000323701 TAS2R41P59536 307 aa17.04■□□□□ 0.32
USP39-201ENST00000323701 IL5RAQ01344 420 aa17.04■□□□□ 0.32
USP39-201ENST00000323701 CDK5R2Q13319 367 aa17.04■□□□□ 0.32
USP39-201ENST00000323701 ZNHIT3Q15649 155 aaPredicted RBP17.04■□□□□ 0.32
USP39-201ENST00000323701 SMN1Q16637 294 aaKnown RBP17.04■□□□□ 0.32
USP39-201ENST00000323701 TMEM236Q5W0B7 351 aa17.04■□□□□ 0.32
USP39-201ENST00000323701 ZNF385CQ66K41 422 aaPredicted RBP17.04■□□□□ 0.32
USP39-201ENST00000323701 SLC2A12Q8TD20 617 aa17.04■□□□□ 0.32
USP39-201ENST00000323701 HRASLS5Q96KN8 279 aa17.04■□□□□ 0.32
USP39-201ENST00000323701 PITX2Q99697 317 aa17.04■□□□□ 0.32
USP39-201ENST00000323701 ADNPQ9H2P0 1102 aa17.04■□□□□ 0.32
USP39-201ENST00000323701 MKKSQ9NPJ1 570 aaPredicted RBP17.04■□□□□ 0.32
USP39-201ENST00000323701 RASSF1Q9NS23 344 aa17.04■□□□□ 0.32
USP39-201ENST00000323701 REV1Q9UBZ9 1251 aa17.04■□□□□ 0.32
USP39-201ENST00000323701 TMCC3Q9ULS5 477 aa17.04■□□□□ 0.32
USP39-201ENST00000323701 ZNF232Q9UNY5 417 aa17.04■□□□□ 0.32
USP39-201ENST00000323701 POFUT2Q9Y2G5 429 aa17.04■□□□□ 0.32
USP39-201ENST00000323701 IGHV3-20A0A0C4DH32 117 aa17.04■□□□□ 0.32
USP39-201ENST00000323701 ARRDC5A6NEK1 342 aa17.04■□□□□ 0.32
USP39-201ENST00000323701 CNOT3O75175 753 aaKnown RBP17.04■□□□□ 0.32
USP39-201ENST00000323701 DBIP07108 87 aaKnown RBP17.04■□□□□ 0.32
USP39-201ENST00000323701 CCL4P13236 92 aa17.04■□□□□ 0.32
USP39-201ENST00000323701 CRHBPP24387 322 aa17.04■□□□□ 0.32
USP39-201ENST00000323701 HTR2AP28223 471 aa17.04■□□□□ 0.32
USP39-201ENST00000323701 PIGFQ07326 219 aa17.04■□□□□ 0.32
USP39-201ENST00000323701 ZFP36L1Q07352 338 aaKnown RBP17.04■□□□□ 0.32
USP39-201ENST00000323701 SF3A2Q15428 464 aaKnown RBP17.04■□□□□ 0.32
USP39-201ENST00000323701 NADK2Q4G0N4 442 aa17.04■□□□□ 0.32
USP39-201ENST00000323701 NKAIN1Q4KMZ8 207 aa17.04■□□□□ 0.32
USP39-201ENST00000323701 ZER1Q7Z7L7 766 aa17.04■□□□□ 0.32
USP39-201ENST00000323701 NKAIN4Q8IVV8 208 aa17.04■□□□□ 0.32
USP39-201ENST00000323701 BCORP1Q8N888 145 aa17.04■□□□□ 0.32
USP39-201ENST00000323701 OR4K5Q8NGD3 323 aa17.04■□□□□ 0.32
USP39-201ENST00000323701 TMIGD2Q96BF3 282 aa17.04■□□□□ 0.32
USP39-201ENST00000323701 MCHR1Q99705 422 aa17.04■□□□□ 0.32
USP39-201ENST00000323701 RHNO1Q9BSD3 238 aa17.04■□□□□ 0.32
USP39-201ENST00000323701 NUDT9Q9BW91 350 aa17.04■□□□□ 0.32
USP39-201ENST00000323701 PAK1IP1Q9NWT1 392 aaPredicted RBP17.04■□□□□ 0.32
USP39-201ENST00000323701 CLCA3PQ9Y6N3 262 aa17.04■□□□□ 0.32
USP39-201ENST00000323701 ZNF318Q5VUA4 2279 aa17.03■□□□□ 0.32
USP39-201ENST00000323701 RALGAPA1Q6GYQ0 2036 aa17.03■□□□□ 0.32
USP39-201ENST00000323701 A0A087WUU8 490 aa17.03■□□□□ 0.32
USP39-201ENST00000323701 EFCAB7A8K855 629 aa17.03■□□□□ 0.32
USP39-201ENST00000323701 FAAHO00519 579 aa17.03■□□□□ 0.32
USP39-201ENST00000323701 XPNPEP2O43895 674 aa17.03■□□□□ 0.32
USP39-201ENST00000323701 AK1P00568 194 aa17.03■□□□□ 0.32
USP39-201ENST00000323701 ZGLP1P0C6A0 271 aa17.03■□□□□ 0.32
USP39-201ENST00000323701 ZNF28P17035 718 aa17.03■□□□□ 0.32
USP39-201ENST00000323701 CDH2P19022 906 aaPredicted RBP17.03■□□□□ 0.32
USP39-201ENST00000323701 FMO3P31513 532 aa17.03■□□□□ 0.32
USP39-201ENST00000323701 GRK6P43250 576 aa17.03■□□□□ 0.32
USP39-201ENST00000323701 FAM69BQ5VUD6 431 aa17.03■□□□□ 0.32
USP39-201ENST00000323701 BMPERQ8N8U9 685 aa17.03■□□□□ 0.32
USP39-201ENST00000323701 OR4C3Q8NH37 302 aa17.03■□□□□ 0.32
USP39-201ENST00000323701 RHBDD1Q8TEB9 315 aa17.03■□□□□ 0.32
USP39-201ENST00000323701 CNOT9Q92600 299 aaKnown RBP17.03■□□□□ 0.32
USP39-201ENST00000323701 ZNF578Q96N58 590 aaPredicted RBP17.03■□□□□ 0.32
USP39-201ENST00000323701 NRSN2Q9GZP1 204 aa17.03■□□□□ 0.32
USP39-201ENST00000323701 KLHL28Q9NXS3 571 aa17.03■□□□□ 0.32
USP39-201ENST00000323701 FLRT3Q9NZU0 649 aa17.03■□□□□ 0.32
USP39-201ENST00000323701 CDX4O14627 284 aaPredicted RBP17.02■□□□□ 0.32
USP39-201ENST00000323701 CYP7B1O75881 506 aa17.02■□□□□ 0.32
USP39-201ENST00000323701 SOX14O95416 240 aa17.02■□□□□ 0.32
USP39-201ENST00000323701 LDOC1O95751 146 aaPredicted RBP17.02■□□□□ 0.32
USP39-201ENST00000323701 TP53P04637 393 aaPredicted RBP17.02■□□□□ 0.32
USP39-201ENST00000323701 CCNYL3P0C7X3 344 aa17.02■□□□□ 0.32
USP39-201ENST00000323701 MMP11P24347 488 aa17.02■□□□□ 0.32
USP39-201ENST00000323701 RORAP35398 523 aa17.02■□□□□ 0.32
USP39-201ENST00000323701 RPL5P46777 297 aaKnown RBP17.02■□□□□ 0.32
USP39-201ENST00000323701 DUSP3P51452 185 aaPredicted RBP17.02■□□□□ 0.32
USP39-201ENST00000323701 IL18R1Q13478 541 aa17.02■□□□□ 0.32
USP39-201ENST00000323701 ELAVL1Q15717 326 aaKnown RBP17.02■□□□□ 0.32
USP39-201ENST00000323701 DESI1Q6ICB0 168 aa17.02■□□□□ 0.32
USP39-201ENST00000323701 PPP1R3BQ86XI6 285 aa17.02■□□□□ 0.32
USP39-201ENST00000323701 ENTHD1Q8IYW4 607 aa17.02■□□□□ 0.32
USP39-201ENST00000323701 ZNF614Q8N883 585 aa17.02■□□□□ 0.32
USP39-201ENST00000323701 PELOQ9BRX2 385 aaKnown RBP17.02■□□□□ 0.32
USP39-201ENST00000323701 NXF5Q9H1B4 397 aaKnown RBP17.02■□□□□ 0.32
USP39-201ENST00000323701 CBLCQ9ULV8 474 aa17.02■□□□□ 0.32
USP39-201ENST00000323701 IGLV3-12A0A075B6K2 115 aa17.02■□□□□ 0.31
USP39-201ENST00000323701 TRIM64CA6NLI5 447 aa17.02■□□□□ 0.31
USP39-201ENST00000323701 NPIPB9F8W1W9 429 aa17.02■□□□□ 0.31
USP39-201ENST00000323701 WBP4O75554 376 aaKnown RBP17.02■□□□□ 0.31
USP39-201ENST00000323701 HTR1AP08908 422 aa17.02■□□□□ 0.31
USP39-201ENST00000323701 CHMP24386 653 aa17.02■□□□□ 0.31
USP39-201ENST00000323701 TARDBPQ13148 414 aaKnown RBP eCLIP17.02■□□□□ 0.31
USP39-201ENST00000323701 PTGES3Q15185 160 aaKnown RBP17.02■□□□□ 0.31
USP39-201ENST00000323701 GDF7Q7Z4P5 450 aa17.02■□□□□ 0.31
USP39-201ENST00000323701 APH1BQ8WW43 257 aa17.02■□□□□ 0.31
USP39-201ENST00000323701 HDAC2Q92769 488 aaKnown RBP17.02■□□□□ 0.31
USP39-201ENST00000323701 EFHD2Q96C19 240 aaPredicted RBP17.02■□□□□ 0.31
USP39-201ENST00000323701 TGIF2Q9GZN2 237 aa17.02■□□□□ 0.31
USP39-201ENST00000323701 ZNF556Q9HAH1 456 aa17.02■□□□□ 0.31
USP39-201ENST00000323701 Q9N2J8 555 aa17.02■□□□□ 0.31
USP39-201ENST00000323701 OR10H1Q9Y4A9 318 aa17.02■□□□□ 0.31
USP39-201ENST00000323701 COL27A1Q8IZC6 1860 aaPredicted RBP17.02■□□□□ 0.31
USP39-201ENST00000323701 SMIM31A0A1B0GVY4 71 aa17.01■□□□□ 0.31
USP39-201ENST00000323701 CDC14CA4D256 554 aa17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms