RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 RRNAD1Q96FB5 475 aaKnown RBP4.98□□□□□ -1.61
SCN1A-201ENST00000303395 APOLD1Q96LR9 279 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 SLC25A31Q9H0C2 315 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 CLMPQ9H6B4 373 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 FN3KRPQ9HA64 309 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 FAM212BQ9NTI7 297 aaPredicted RBP4.98□□□□□ -1.61
SCN1A-201ENST00000303395 RAI2Q9Y5P3 530 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 TMEM150CB9EJG8 249 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 HAS3O00219 553 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 MAN2B1O00754 1011 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 APODP05090 189 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 IDSP22304 550 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 CX3CR1P49238 355 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 HNRNPKP61978 463 aaKnown RBP eCLIP4.98□□□□□ -1.61
SCN1A-201ENST00000303395 SELENOWP63302 87 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 GPR68Q15743 365 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 FAM110CQ1W6H9 321 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 XKR7Q5GH72 579 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 TMEM69Q5SWH9 247 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 ANKRD54Q6NXT1 300 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 TEX26Q8N6G2 289 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 ACBD4Q8NC06 268 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 OR10Q1Q8NGQ4 319 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 OR2T35Q8NGX2 323 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 STK35Q8TDR2 534 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 TMEM234Q8WY98 164 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 GPR20Q99678 358 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 HERPUD2Q9BSE4 406 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 GSKIPQ9P0R6 139 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 TESQ9UGI8 421 aaKnown RBP4.98□□□□□ -1.61
SCN1A-201ENST00000303395 PCDHA9Q9Y5H5 950 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 CLCA3PQ9Y6N3 262 aa4.98□□□□□ -1.61
SCN1A-201ENST00000303395 CRYM-AS1A6NIL9 109 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 SEPT4O43236 478 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 UGT2B7P16662 529 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 NDUFV2P19404 249 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 PRKCZQ05513 592 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 PON2Q15165 354 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 AMHR2Q16671 573 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 TEX30Q5JUR7 227 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 COL13A1Q5TAT6 717 aaPredicted RBP4.97□□□□□ -1.61
SCN1A-201ENST00000303395 XKR5Q6UX68 686 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 ADGRG3Q86Y34 549 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 MFSD9Q8NBP5 474 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 GPR156Q8NFN8 814 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 OR5B17Q8NGF7 314 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 JOSD2Q8TAC2 188 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 CNTNAP3BQ96NU0 1288 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 LHPPQ9H008 270 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 SLC25A19Q9HC21 320 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 POLD4Q9HCU8 107 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 APMAPQ9HDC9 416 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 PDLIM7Q9NR12 457 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 RNF24Q9Y225 148 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 TCRBV7S2A1N4TA0A589 114 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 A6NIZ1 184 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 C12orf71A8MTZ7 269 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 PCDH17O14917 1159 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 SGCEO43556 437 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 KLK8O60259 260 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 FKTNO75072 461 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 SMIM18P0DKX4 95 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 ZBTB48P10074 688 aaPredicted RBP4.97□□□□□ -1.61
SCN1A-201ENST00000303395 RAP1BP61224 184 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 RAP1AP62834 184 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 NKX6-1P78426 367 aaPredicted RBP4.97□□□□□ -1.61
SCN1A-201ENST00000303395 PAPD4Q6PIY7 484 aaKnown RBP4.97□□□□□ -1.61
SCN1A-201ENST00000303395 MRPL52Q86TS9 123 aaKnown RBP4.97□□□□□ -1.61
SCN1A-201ENST00000303395 HPSE2Q8WWQ2 592 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 FRZBQ92765 325 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 SLC25A46Q96AG3 418 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 SAT2Q96F10 170 aaPredicted RBP4.97□□□□□ -1.61
SCN1A-201ENST00000303395 ZFP3Q96NJ6 502 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 NELL2Q99435 816 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 CHRDQ9H2X0 955 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 DPEP2Q9H4A9 486 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 SIRT5Q9NXA8 310 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 NDRG4Q9ULP0 352 aaKnown RBP4.97□□□□□ -1.61
SCN1A-201ENST00000303395 DIRAS1O95057 198 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 THBS2P35442 1172 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 BMPR1AP36894 532 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 GSK3AP49840 483 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 RPL11P62913 178 aaKnown RBP4.97□□□□□ -1.61
SCN1A-201ENST00000303395 RNF4P78317 190 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 HSD11B2P80365 405 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 DEFA6Q01524 100 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 P2RY14Q15391 338 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 SLC39A12Q504Y0 691 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 PPP1R26Q5T8A7 1209 aaPredicted RBP4.97□□□□□ -1.61
SCN1A-201ENST00000303395 TNFAIP8L2Q6P589 184 aaPredicted RBP4.97□□□□□ -1.61
SCN1A-201ENST00000303395 TPRG1Q6ZUI0 275 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 GTF2H5Q6ZYL4 71 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 MRPL10Q7Z7H8 261 aaKnown RBP4.97□□□□□ -1.61
SCN1A-201ENST00000303395 FAM26EQ8N5C1 309 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 TRAM1L1Q8N609 369 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 COX18Q8N8Q8 333 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 OR2T27Q8NH04 317 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 NT5C3BQ969T7 300 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 SCMH1Q96GD3 660 aa4.97□□□□□ -1.61
SCN1A-201ENST00000303395 DPH2Q9BQC3 489 aaPredicted RBP4.97□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms