RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 ZSWIM7Q19AV6 140 aa13.04□□□□□ -0.32
SS18-201ENST00000269137 EXOC3L2Q2M3D2 409 aa13.04□□□□□ -0.32
SS18-201ENST00000269137 ANKRD34AQ69YU3 496 aa13.04□□□□□ -0.32
SS18-201ENST00000269137 C17orf47Q8NEP4 570 aa13.04□□□□□ -0.32
SS18-201ENST00000269137 B3GNT7Q8NFL0 401 aa13.04□□□□□ -0.32
SS18-201ENST00000269137 OR52J3Q8NH60 311 aa13.04□□□□□ -0.32
SS18-201ENST00000269137 GATA6Q92908 595 aa13.04□□□□□ -0.32
SS18-201ENST00000269137 PRRC1Q96M27 445 aa13.04□□□□□ -0.32
SS18-201ENST00000269137 NXF5Q9H1B4 397 aaKnown RBP13.04□□□□□ -0.32
SS18-201ENST00000269137 ARMC7Q9H6L4 198 aa13.04□□□□□ -0.32
SS18-201ENST00000269137 RLIMQ9NVW2 624 aa13.04□□□□□ -0.32
SS18-201ENST00000269137 C19orf25Q9UFG5 118 aaPredicted RBP13.04□□□□□ -0.32
SS18-201ENST00000269137 C2orf92A0A1B0GVN3 265 aa13.04□□□□□ -0.32
SS18-201ENST00000269137 A0A1W2PRQ8 180 aa13.04□□□□□ -0.32
SS18-201ENST00000269137 CDHR4A6H8M9 788 aa13.04□□□□□ -0.32
SS18-201ENST00000269137 TO15178 435 aa13.04□□□□□ -0.32
SS18-201ENST00000269137 DKK1O94907 266 aa13.04□□□□□ -0.32
SS18-201ENST00000269137 CD63P08962 238 aa13.04□□□□□ -0.32
SS18-201ENST00000269137 JMJD7P0C870 316 aa13.04□□□□□ -0.32
SS18-201ENST00000269137 IGFBP5P24593 272 aa13.04□□□□□ -0.32
SS18-201ENST00000269137 LCN1P31025 176 aa13.04□□□□□ -0.32
SS18-201ENST00000269137 CAPGP40121 348 aa13.04□□□□□ -0.32
SS18-201ENST00000269137 ATP12AP54707 1039 aa13.04□□□□□ -0.32
SS18-201ENST00000269137 PSPHP78330 225 aa13.04□□□□□ -0.32
SS18-201ENST00000269137 DGCR6Q14129 220 aa13.04□□□□□ -0.32
SS18-201ENST00000269137 GANABQ14697 944 aaKnown RBP13.04□□□□□ -0.32
SS18-201ENST00000269137 NCF4Q15080 339 aa13.04□□□□□ -0.32
SS18-201ENST00000269137 PDK3Q15120 406 aa13.04□□□□□ -0.32
SS18-201ENST00000269137 DHRS13Q6UX07 377 aa13.04□□□□□ -0.32
SS18-201ENST00000269137 SLC29A4Q7RTT9 530 aa13.04□□□□□ -0.32
SS18-201ENST00000269137 CPEB2Q7Z5Q1 589 aaKnown RBP13.04□□□□□ -0.32
SS18-201ENST00000269137 C9orf40Q8IXQ3 194 aa13.04□□□□□ -0.32
SS18-201ENST00000269137 ZNF441Q8N8Z8 693 aa13.04□□□□□ -0.32
SS18-201ENST00000269137 GALNT6Q8NCL4 622 aa13.04□□□□□ -0.32
SS18-201ENST00000269137 ALPK1Q96QP1 1244 aa13.04□□□□□ -0.32
SS18-201ENST00000269137 WDR77Q9BQA1 342 aaPredicted RBP13.04□□□□□ -0.32
SS18-201ENST00000269137 WWTR1Q9GZV5 400 aa13.04□□□□□ -0.32
SS18-201ENST00000269137 TOR3AQ9H497 397 aa13.04□□□□□ -0.32
SS18-201ENST00000269137 ORC6Q9Y5N6 252 aa13.04□□□□□ -0.32
SS18-201ENST00000269137 NPIPA5A0A0B4J1W7 369 aa13.03□□□□□ -0.32
SS18-201ENST00000269137 MAGEA13PA6NCF6 341 aa13.03□□□□□ -0.32
SS18-201ENST00000269137 CLDN24A6NM45 220 aa13.03□□□□□ -0.32
SS18-201ENST00000269137 NPIPA7E9PJI5 369 aa13.03□□□□□ -0.32
SS18-201ENST00000269137 PCDH17O14917 1159 aa13.03□□□□□ -0.32
SS18-201ENST00000269137 PLD2O14939 933 aa13.03□□□□□ -0.32
SS18-201ENST00000269137 TPST2O60704 377 aa13.03□□□□□ -0.32
SS18-201ENST00000269137 STK17BO94768 372 aa13.03□□□□□ -0.32
SS18-201ENST00000269137 IL33O95760 270 aa13.03□□□□□ -0.32
SS18-201ENST00000269137 NPIPA8P0DM63 369 aa13.03□□□□□ -0.32
SS18-201ENST00000269137 ANXA8P13928 327 aa13.03□□□□□ -0.32
SS18-201ENST00000269137 RFX3P48380 749 aa13.03□□□□□ -0.32
SS18-201ENST00000269137 CLDN6P56747 220 aa13.03□□□□□ -0.32
SS18-201ENST00000269137 RGS8P57771 180 aaPredicted RBP13.03□□□□□ -0.32
SS18-201ENST00000269137 PIN1Q13526 163 aaPredicted RBP13.03□□□□□ -0.32
SS18-201ENST00000269137 NNATQ16517 81 aa13.03□□□□□ -0.32
SS18-201ENST00000269137 MRPL2Q5T653 305 aaKnown RBP13.03□□□□□ -0.32
SS18-201ENST00000269137 HLA-DQA1Q5Y7H0 255 aa13.03□□□□□ -0.32
SS18-201ENST00000269137 TMEM154Q6P9G4 183 aa13.03□□□□□ -0.32
SS18-201ENST00000269137 FAM199XQ6PEV8 388 aaPredicted RBP13.03□□□□□ -0.32
SS18-201ENST00000269137 SLCO6A1Q86UG4 719 aa13.03□□□□□ -0.32
SS18-201ENST00000269137 GRAMD2AQ8IUY3 354 aa13.03□□□□□ -0.32
SS18-201ENST00000269137 OFCC1Q8IZS5 231 aa13.03□□□□□ -0.32
SS18-201ENST00000269137 TAGAPQ8N103 731 aa13.03□□□□□ -0.32
SS18-201ENST00000269137 ATG16L2Q8NAA4 619 aa13.03□□□□□ -0.32
SS18-201ENST00000269137 OR10G2Q8NGC3 310 aa13.03□□□□□ -0.32
SS18-201ENST00000269137 SLC35B4Q969S0 331 aa13.03□□□□□ -0.32
SS18-201ENST00000269137 LPAR4Q99677 370 aa13.03□□□□□ -0.32
SS18-201ENST00000269137 FUZQ9BT04 418 aa13.03□□□□□ -0.32
SS18-201ENST00000269137 FNDC11Q9BVV2 318 aa13.03□□□□□ -0.32
SS18-201ENST00000269137 SPRY4Q9C004 299 aa13.03□□□□□ -0.32
SS18-201ENST00000269137 HOXD1Q9GZZ0 328 aa13.03□□□□□ -0.32
SS18-201ENST00000269137 UBAP1Q9NZ09 502 aa13.03□□□□□ -0.32
SS18-201ENST00000269137 RHCGQ9UBD6 479 aa13.03□□□□□ -0.32
SS18-201ENST00000269137 PISDQ9UG56 409 aa13.03□□□□□ -0.32
SS18-201ENST00000269137 MRTO4Q9UKD2 239 aaKnown RBP13.03□□□□□ -0.32
SS18-201ENST00000269137 LOC102723996A0A087X1L8 192 aa13.02□□□□□ -0.32
SS18-201ENST00000269137 IGHV3-20A0A0C4DH32 117 aa13.02□□□□□ -0.32
SS18-201ENST00000269137 FRS3O43559 492 aa13.02□□□□□ -0.32
SS18-201ENST00000269137 FMO6PO60774 539 aa13.02□□□□□ -0.32
SS18-201ENST00000269137 KLF7O75840 302 aaPredicted RBP13.02□□□□□ -0.32
SS18-201ENST00000269137 CCNB2O95067 398 aa13.02□□□□□ -0.32
SS18-201ENST00000269137 DLGAP3O95886 979 aa13.02□□□□□ -0.32
SS18-201ENST00000269137 FUT4P22083 530 aa13.02□□□□□ -0.32
SS18-201ENST00000269137 MYF6P23409 242 aa13.02□□□□□ -0.32
SS18-201ENST00000269137 PDZK1Q5T2W1 519 aa13.02□□□□□ -0.32
SS18-201ENST00000269137 HES3Q5TGS1 186 aa13.02□□□□□ -0.32
SS18-201ENST00000269137 TTC23Q5W5X9 447 aa13.02□□□□□ -0.32
SS18-201ENST00000269137 ZNF770Q6IQ21 691 aaPredicted RBP13.02□□□□□ -0.32
SS18-201ENST00000269137 PAPD4Q6PIY7 484 aaKnown RBP13.02□□□□□ -0.32
SS18-201ENST00000269137 UGT2A3Q6UWM9 527 aa13.02□□□□□ -0.32
SS18-201ENST00000269137 USP51Q70EK9 711 aa13.02□□□□□ -0.32
SS18-201ENST00000269137 TSPYL5Q86VY4 417 aaPredicted RBP13.02□□□□□ -0.32
SS18-201ENST00000269137 CMIPQ8IY22 773 aa13.02□□□□□ -0.32
SS18-201ENST00000269137 SLC5A8Q8N695 610 aa13.02□□□□□ -0.32
SS18-201ENST00000269137 APCDD1LQ8NCL9 501 aa13.02□□□□□ -0.32
SS18-201ENST00000269137 CYGBQ8WWM9 190 aa13.02□□□□□ -0.32
SS18-201ENST00000269137 HSPBAP1Q96EW2 488 aa13.02□□□□□ -0.32
SS18-201ENST00000269137 CNBD2Q96M20 576 aa13.02□□□□□ -0.32
SS18-201ENST00000269137 MBOAT4Q96T53 435 aa13.02□□□□□ -0.32
SS18-201ENST00000269137 FEVQ99581 238 aa13.02□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms