RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 IFI6P09912 130 aa12.79□□□□□ -0.36
LDLR-201ENST00000252444 PSMB5P28074 263 aa12.79□□□□□ -0.36
LDLR-201ENST00000252444 GCGRP47871 477 aa12.79□□□□□ -0.36
LDLR-201ENST00000252444 TMBIM6P55061 237 aa12.79□□□□□ -0.36
LDLR-201ENST00000252444 OR4K5Q8NGD3 323 aa12.79□□□□□ -0.36
LDLR-201ENST00000252444 CIDECQ96AQ7 238 aaPredicted RBP12.79□□□□□ -0.36
LDLR-201ENST00000252444 EDEM2Q9BV94 578 aa12.79□□□□□ -0.36
LDLR-201ENST00000252444 ABCG2Q9UNQ0 655 aa12.79□□□□□ -0.36
LDLR-201ENST00000252444 MOKQ9UQ07 419 aa12.79□□□□□ -0.36
LDLR-201ENST00000252444 CCDC182A6NF36 153 aa12.79□□□□□ -0.36
LDLR-201ENST00000252444 OR6C65A6NJZ3 312 aa12.79□□□□□ -0.36
LDLR-201ENST00000252444 NPIPB8E9PQR5 432 aa12.79□□□□□ -0.36
LDLR-201ENST00000252444 CDC123O75794 336 aaPredicted RBP12.79□□□□□ -0.36
LDLR-201ENST00000252444 POU2F1P14859 743 aa12.79□□□□□ -0.36
LDLR-201ENST00000252444 POU3F3P20264 500 aaPredicted RBP12.79□□□□□ -0.36
LDLR-201ENST00000252444 CASP9P55211 416 aa12.79□□□□□ -0.36
LDLR-201ENST00000252444 TEKQ02763 1124 aa12.79□□□□□ -0.36
LDLR-201ENST00000252444 CRYZQ08257 329 aaKnown RBP12.79□□□□□ -0.36
LDLR-201ENST00000252444 Q6ZSR9 355 aa12.79□□□□□ -0.36
LDLR-201ENST00000252444 KCTD20Q7Z5Y7 419 aa12.79□□□□□ -0.36
LDLR-201ENST00000252444 PAIP1Q9H074 479 aaKnown RBP12.79□□□□□ -0.36
LDLR-201ENST00000252444 HEMK1Q9Y5R4 338 aaPredicted RBP12.79□□□□□ -0.36
LDLR-201ENST00000252444 TPST2O60704 377 aa12.79□□□□□ -0.36
LDLR-201ENST00000252444 FASLGP48023 281 aa12.79□□□□□ -0.36
LDLR-201ENST00000252444 TMEM17Q86X19 198 aa12.79□□□□□ -0.36
LDLR-201ENST00000252444 SFXN2Q96NB2 322 aa12.79□□□□□ -0.36
LDLR-201ENST00000252444 CLCC1Q96S66 551 aa12.79□□□□□ -0.36
LDLR-201ENST00000252444 PIGQQ9BRB3 760 aa12.79□□□□□ -0.36
LDLR-201ENST00000252444 SPEF1Q9Y4P9 236 aa12.79□□□□□ -0.36
LDLR-201ENST00000252444 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP12.78□□□□□ -0.36
LDLR-201ENST00000252444 LOC102725191A0A1B0GVB3 256 aa12.78□□□□□ -0.36
LDLR-201ENST00000252444 BLOC1S5-TXNDC5H3BN57 136 aa12.78□□□□□ -0.36
LDLR-201ENST00000252444 TCN2P20062 427 aa12.78□□□□□ -0.36
LDLR-201ENST00000252444 SFT2D3Q587I9 215 aa12.78□□□□□ -0.36
LDLR-201ENST00000252444 CEP78Q5JTW2 689 aa12.78□□□□□ -0.36
LDLR-201ENST00000252444 GLT8D1Q68CQ7 371 aa12.78□□□□□ -0.36
LDLR-201ENST00000252444 TMEM207Q6UWW9 146 aa12.78□□□□□ -0.36
LDLR-201ENST00000252444 OR4D9Q8NGE8 314 aa12.78□□□□□ -0.36
LDLR-201ENST00000252444 GOT1L1Q8NHS2 421 aaPredicted RBP12.78□□□□□ -0.36
LDLR-201ENST00000252444 GORASP1Q9BQQ3 440 aa12.78□□□□□ -0.36
LDLR-201ENST00000252444 TMPRSS11EQ9UL52 423 aa12.78□□□□□ -0.36
LDLR-201ENST00000252444 SERINC4A6NH21 518 aa12.78□□□□□ -0.36
LDLR-201ENST00000252444 TGFBR3Q03167 851 aa12.78□□□□□ -0.36
LDLR-201ENST00000252444 ARHGAP11BQ3KRB8 267 aa12.78□□□□□ -0.36
LDLR-201ENST00000252444 MFSD12Q6NUT3 480 aa12.78□□□□□ -0.36
LDLR-201ENST00000252444 JMJD6Q6NYC1 403 aaPredicted RBP12.78□□□□□ -0.36
LDLR-201ENST00000252444 DTWD1Q8N5C7 304 aa12.78□□□□□ -0.36
LDLR-201ENST00000252444 CDS1Q92903 461 aa12.78□□□□□ -0.36
LDLR-201ENST00000252444 MROQ9BYG7 248 aa12.78□□□□□ -0.36
LDLR-201ENST00000252444 AGPAT4Q9NRZ5 378 aa12.78□□□□□ -0.36
LDLR-201ENST00000252444 WIF1Q9Y5W5 379 aa12.78□□□□□ -0.36
LDLR-201ENST00000252444 MEGF11A6BM72 1044 aa12.78□□□□□ -0.36
LDLR-201ENST00000252444 HCRTR1O43613 425 aa12.78□□□□□ -0.36
LDLR-201ENST00000252444 IL33O95760 270 aa12.78□□□□□ -0.36
LDLR-201ENST00000252444 ALDOCP09972 364 aaKnown RBP12.78□□□□□ -0.36
LDLR-201ENST00000252444 CD1CP29017 333 aa12.78□□□□□ -0.36
LDLR-201ENST00000252444 PROX2Q3B8N5 592 aa12.78□□□□□ -0.36
LDLR-201ENST00000252444 NKAIN1Q4KMZ8 207 aa12.78□□□□□ -0.36
LDLR-201ENST00000252444 CRTC2Q53ET0 693 aaPredicted RBP12.78□□□□□ -0.36
LDLR-201ENST00000252444 SH2D5Q6ZV89 423 aa12.78□□□□□ -0.36
LDLR-201ENST00000252444 ZNF675Q8TD23 568 aa12.78□□□□□ -0.36
LDLR-201ENST00000252444 ELL3Q9HB65 397 aaPredicted RBP12.78□□□□□ -0.36
LDLR-201ENST00000252444 BCL2L10Q9HD36 194 aa12.78□□□□□ -0.36
LDLR-201ENST00000252444 GALNT8Q9NY28 637 aa12.78□□□□□ -0.36
LDLR-201ENST00000252444 HMX2A2RU54 273 aa12.78□□□□□ -0.36
LDLR-201ENST00000252444 POM121BA6NF01 834 aa12.78□□□□□ -0.36
LDLR-201ENST00000252444 TLX2O43763 284 aaPredicted RBP12.78□□□□□ -0.36
LDLR-201ENST00000252444 FCGR2AP12318 317 aa12.78□□□□□ -0.36
LDLR-201ENST00000252444 HLCSP50747 726 aa12.78□□□□□ -0.36
LDLR-201ENST00000252444 SCN1BQ07699 218 aa12.78□□□□□ -0.36
LDLR-201ENST00000252444 FIGNL1Q6PIW4 674 aa12.78□□□□□ -0.36
LDLR-201ENST00000252444 WDR74Q6RFH5 385 aaPredicted RBP12.78□□□□□ -0.36
LDLR-201ENST00000252444 WDR88Q6ZMY6 472 aa12.78□□□□□ -0.36
LDLR-201ENST00000252444 ZNF761Q86XN6 746 aaPredicted RBP12.78□□□□□ -0.36
LDLR-201ENST00000252444 OR2A25A4D2G3 310 aa12.77□□□□□ -0.36
LDLR-201ENST00000252444 ARRDC5A6NEK1 342 aa12.77□□□□□ -0.36
LDLR-201ENST00000252444 AGRPO00253 132 aa12.77□□□□□ -0.36
LDLR-201ENST00000252444 ZNF208O43345 1280 aa12.77□□□□□ -0.36
LDLR-201ENST00000252444 DHFRP00374 187 aa12.77□□□□□ -0.36
LDLR-201ENST00000252444 NAGAP17050 411 aa12.77□□□□□ -0.36
LDLR-201ENST00000252444 RIDAP52758 137 aaKnown RBP12.77□□□□□ -0.36
LDLR-201ENST00000252444 OR1D5P58170 312 aa12.77□□□□□ -0.36
LDLR-201ENST00000252444 MEP1AQ16819 746 aa12.77□□□□□ -0.36
LDLR-201ENST00000252444 NAT14Q8WUY8 206 aa12.77□□□□□ -0.36
LDLR-201ENST00000252444 DUS3LQ96G46 650 aaKnown RBP12.77□□□□□ -0.36
LDLR-201ENST00000252444 C3orf30Q96M34 536 aa12.77□□□□□ -0.36
LDLR-201ENST00000252444 VAPAQ9P0L0 249 aa12.77□□□□□ -0.36
LDLR-201ENST00000252444 I6L893 689 aaPredicted RBP12.77□□□□□ -0.36
LDLR-201ENST00000252444 K7ESM1 405 aa12.77□□□□□ -0.36
LDLR-201ENST00000252444 MTRF1O75570 445 aaKnown RBP12.77□□□□□ -0.36
LDLR-201ENST00000252444 PAPLNO95428 1278 aa12.77□□□□□ -0.36
LDLR-201ENST00000252444 IFNA6P05013 189 aa12.77□□□□□ -0.36
LDLR-201ENST00000252444 ZNF43P17038 809 aa12.77□□□□□ -0.36
LDLR-201ENST00000252444 KCNJ10P78508 379 aa12.77□□□□□ -0.36
LDLR-201ENST00000252444 IL10RAQ13651 578 aa12.77□□□□□ -0.36
LDLR-201ENST00000252444 UGT8Q16880 541 aa12.77□□□□□ -0.36
LDLR-201ENST00000252444 CGB2Q6NT52 195 aa12.77□□□□□ -0.36
LDLR-201ENST00000252444 ZSCAN2Q7Z7L9 614 aaPredicted RBP12.77□□□□□ -0.36
LDLR-201ENST00000252444 SMIM14Q96QK8 99 aa12.77□□□□□ -0.36
LDLR-201ENST00000252444 H0YC42 278 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms