RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 RPL23AP62750 156 aaKnown RBP2.65□□□□□ -1.99
SCN1A-219ENST00000641575 BTG2P78543 158 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 CRYZQ08257 329 aaKnown RBP2.65□□□□□ -1.99
SCN1A-219ENST00000641575 PLA2G7Q13093 441 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 Q3ZCU0 254 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 WIPI1Q5MNZ9 446 aaPredicted RBP2.65□□□□□ -1.99
SCN1A-219ENST00000641575 LIPJQ5W064 366 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 MOXD1Q6UVY6 613 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 HACD2Q6Y1H2 254 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 C17orf107Q6ZR85 190 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 ALYREFQ86V81 257 aaKnown RBP2.65□□□□□ -1.99
SCN1A-219ENST00000641575 NUDT13Q86X67 352 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 PLPP5Q8NEB5 264 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 APH1BQ8WW43 257 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 DYNLL2Q96FJ2 89 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 PHOX2BQ99453 314 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 MKRN2Q9H000 416 aaKnown RBP2.65□□□□□ -1.99
SCN1A-219ENST00000641575 ALDH8A1Q9H2A2 487 aaPredicted RBP2.65□□□□□ -1.99
SCN1A-219ENST00000641575 PTPRHQ9HD43 1115 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 TMEM59LQ9UK28 342 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 PCTPQ9UKL6 214 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 TARBP1Q13395 1621 aaKnown RBP2.65□□□□□ -1.99
SCN1A-219ENST00000641575 MROH2AA6NES4 1674 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 HELZP42694 1942 aaKnown RBP2.65□□□□□ -1.99
SCN1A-219ENST00000641575 RCCD1A6NED2 376 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 SHISA7A6NL88 538 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 SIGLEC16A6NMB1 481 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 NUDT19A8MXV4 375 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 C17orf112F2Z3M2 114 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 TSPAN6O43657 245 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 MMP20O60882 483 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 CSDE1O75534 798 aaKnown RBP2.65□□□□□ -1.99
SCN1A-219ENST00000641575 MT-CO1P00395 513 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 AQP2P41181 271 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 CDKN2BP42772 138 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 GRIA4P48058 902 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 KLK7P49862 253 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 DCAF7P61962 342 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 ZNF33AQ06730 810 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 KLF10Q13118 480 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 SNTB1Q13884 538 aaKnown RBP2.65□□□□□ -1.99
SCN1A-219ENST00000641575 STXBP5Q5T5C0 1151 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 KIAA1161Q6NSJ0 714 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 ZNF101Q8IZC7 436 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 BPIFB2Q8N4F0 458 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 TECTBQ96PL2 329 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 ORAI2Q96SN7 254 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 GPR22Q99680 433 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 CMSS1Q9BQ75 279 aaKnown RBP2.65□□□□□ -1.99
SCN1A-219ENST00000641575 RHNO1Q9BSD3 238 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 MRI1Q9BV20 369 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 ZNF436Q9C0F3 470 aaPredicted RBP2.65□□□□□ -1.99
SCN1A-219ENST00000641575 HOXD1Q9GZZ0 328 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 PPIL3Q9H2H8 161 aaKnown RBP2.65□□□□□ -1.99
SCN1A-219ENST00000641575 KCNJ16Q9NPI9 418 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 SLC7A8Q9UHI5 535 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 PCDHA9Q9Y5H5 950 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 PTPRBP23467 1997 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 H0Y8G0 127 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 ADAMDEC1O15204 470 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 TMEM63AO94886 807 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 ADAP00813 363 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 MT-ND2P03891 347 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 GABRA1P14867 456 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 NAA10P41227 235 aaPredicted RBP2.65□□□□□ -1.99
SCN1A-219ENST00000641575 SGSHP51688 502 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 PPP2CBP62714 309 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 RAC1P63000 192 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 CAP1Q01518 475 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 PLCXD3Q63HM9 321 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 H1FNTQ75WM6 255 aaPredicted RBP2.65□□□□□ -1.99
SCN1A-219ENST00000641575 RHOUQ7L0Q8 258 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 PCDH20Q8N6Y1 951 aaKnown RBP2.65□□□□□ -1.99
SCN1A-219ENST00000641575 ZNF383Q8NA42 475 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 OR5B17Q8NGF7 314 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 RSPRY1Q96DX4 576 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 ZNF382Q96SR6 550 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 DPH2Q9BQC3 489 aaPredicted RBP2.65□□□□□ -1.99
SCN1A-219ENST00000641575 TMEM47Q9BQJ4 181 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 MIEN1Q9BRT3 115 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 CRB3Q9BUF7 120 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 MFFQ9GZY8 342 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 PRDM9Q9NQV7 894 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 MST1RQ04912 1400 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 MAP3K4Q9Y6R4 1608 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 CASTOR2A6NHX0 329 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 KIAA0355O15063 1070 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 PMM2O15305 246 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 TRBC1P01850 177 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 FGF3P11487 239 aaPredicted RBP2.65□□□□□ -1.99
SCN1A-219ENST00000641575 CCL5P13501 91 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 ETFAP13804 333 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 C5AR1P21730 350 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 BRS3P32247 399 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 SLC6A11P48066 632 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 TGM4P49221 684 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 GAB1Q13480 694 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 UGT8Q16880 541 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 FSTL4Q6MZW2 842 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 POMZP3Q6PJE2 187 aa2.65□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms