RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 TROVE2P10155 538 aaKnown RBP eCLIP16.7■□□□□ 0.26
CLN3-259ENST00000637551 CYP4B1P13584 511 aa16.7■□□□□ 0.26
CLN3-259ENST00000637551 TBXA2RP21731 343 aa16.7■□□□□ 0.26
CLN3-259ENST00000637551 PTPN6P29350 595 aa16.7■□□□□ 0.26
CLN3-259ENST00000637551 MAGEA5P43359 124 aa16.7■□□□□ 0.26
CLN3-259ENST00000637551 TRPC1P48995 793 aa16.7■□□□□ 0.26
CLN3-259ENST00000637551 PRKAG1P54619 331 aa16.7■□□□□ 0.26
CLN3-259ENST00000637551 GAS1P54826 345 aa16.7■□□□□ 0.26
CLN3-259ENST00000637551 DUSP5Q16690 384 aa16.7■□□□□ 0.26
CLN3-259ENST00000637551 NHSL2Q5HYW2 709 aa16.7■□□□□ 0.26
CLN3-259ENST00000637551 SAXO2Q658L1 398 aa16.7■□□□□ 0.26
CLN3-259ENST00000637551 PLCZ1Q86YW0 608 aa16.7■□□□□ 0.26
CLN3-259ENST00000637551 CHDHQ8NE62 594 aaPredicted RBP16.7■□□□□ 0.26
CLN3-259ENST00000637551 OR4N2Q8NGD1 307 aa16.7■□□□□ 0.26
CLN3-259ENST00000637551 OR52N2Q8NGI0 321 aa16.7■□□□□ 0.26
CLN3-259ENST00000637551 TSPEARQ8WU66 669 aa16.7■□□□□ 0.26
CLN3-259ENST00000637551 PHF10Q8WUB8 498 aaKnown RBP16.7■□□□□ 0.26
CLN3-259ENST00000637551 SLC9A6Q92581 669 aa16.7■□□□□ 0.26
CLN3-259ENST00000637551 PMM1Q92871 262 aa16.7■□□□□ 0.26
CLN3-259ENST00000637551 SARAFQ96BY9 339 aa16.7■□□□□ 0.26
CLN3-259ENST00000637551 UBQLN4Q9NRR5 601 aa16.7■□□□□ 0.26
CLN3-259ENST00000637551 GMEB1Q9Y692 573 aa16.7■□□□□ 0.26
CLN3-259ENST00000637551 FREM3P0C091 2139 aa16.7■□□□□ 0.26
CLN3-259ENST00000637551 ABOP16442 354 aa16.69■□□□□ 0.26
CLN3-259ENST00000637551 IL12AP29459 219 aa16.69■□□□□ 0.26
CLN3-259ENST00000637551 PTGS2P35354 604 aa16.69■□□□□ 0.26
CLN3-259ENST00000637551 PTGER4P35408 488 aa16.69■□□□□ 0.26
CLN3-259ENST00000637551 GCKP35557 465 aa16.69■□□□□ 0.26
CLN3-259ENST00000637551 POLR2JP52435 117 aaKnown RBP16.69■□□□□ 0.26
CLN3-259ENST00000637551 KCNK10P57789 538 aa16.69■□□□□ 0.26
CLN3-259ENST00000637551 SQLEQ14534 574 aa16.69■□□□□ 0.26
CLN3-259ENST00000637551 EIF2S3LQ2VIR3 472 aaKnown RBP16.69■□□□□ 0.26
CLN3-259ENST00000637551 C6orf120Q7Z4R8 191 aa16.69■□□□□ 0.26
CLN3-259ENST00000637551 MTERF4Q7Z6M4 381 aaKnown RBP16.69■□□□□ 0.26
CLN3-259ENST00000637551 CLECL1Q8IZS7 167 aa16.69■□□□□ 0.26
CLN3-259ENST00000637551 ZNF527Q8NB42 609 aa16.69■□□□□ 0.26
CLN3-259ENST00000637551 NEIL3Q8TAT5 605 aa16.69■□□□□ 0.26
CLN3-259ENST00000637551 PRR7Q8TB68 274 aa16.69■□□□□ 0.26
CLN3-259ENST00000637551 FAM57AQ8TBR7 257 aa16.69■□□□□ 0.26
CLN3-259ENST00000637551 EFHD2Q96C19 240 aaPredicted RBP16.69■□□□□ 0.26
CLN3-259ENST00000637551 RMND5BQ96G75 393 aaPredicted RBP16.69■□□□□ 0.26
CLN3-259ENST00000637551 ITCHQ96J02 903 aa16.69■□□□□ 0.26
CLN3-259ENST00000637551 PANX1Q96RD7 426 aa16.69■□□□□ 0.26
CLN3-259ENST00000637551 EXD2Q9NVH0 621 aa16.69■□□□□ 0.26
CLN3-259ENST00000637551 THUMPD1Q9NXG2 353 aaKnown RBP16.69■□□□□ 0.26
CLN3-259ENST00000637551 PLEKHB1Q9UF11 243 aaPredicted RBP16.69■□□□□ 0.26
CLN3-259ENST00000637551 ABCA12Q86UK0 2595 aa16.69■□□□□ 0.26
CLN3-259ENST00000637551 MYO7BQ6PIF6 2116 aa16.69■□□□□ 0.26
CLN3-259ENST00000637551 NCOA6Q14686 2063 aaPredicted RBP16.68■□□□□ 0.26
CLN3-259ENST00000637551 TRGV5A0A0B4J1U4 118 aa16.68■□□□□ 0.26
CLN3-259ENST00000637551 FAM166BA8MTA8 275 aa16.68■□□□□ 0.26
CLN3-259ENST00000637551 E9PLN8 166 aa16.68■□□□□ 0.26
CLN3-259ENST00000637551 G3V3Y1 287 aa16.68■□□□□ 0.26
CLN3-259ENST00000637551 LINC01387J3KSC0 135 aa16.68■□□□□ 0.26
CLN3-259ENST00000637551 AGAP20933 346 aa16.68■□□□□ 0.26
CLN3-259ENST00000637551 GDF1P27539 372 aa16.68■□□□□ 0.26
CLN3-259ENST00000637551 MSX1P28360 303 aa16.68■□□□□ 0.26
CLN3-259ENST00000637551 SRD5A2P31213 254 aa16.68■□□□□ 0.26
CLN3-259ENST00000637551 SOAT1P35610 550 aa16.68■□□□□ 0.26
CLN3-259ENST00000637551 ZFP36L2P47974 494 aaKnown RBP16.68■□□□□ 0.26
CLN3-259ENST00000637551 C17orf67Q0P5P2 114 aa16.68■□□□□ 0.26
CLN3-259ENST00000637551 SF3B4Q15427 424 aaKnown RBP eCLIP16.68■□□□□ 0.262e-7■■■■□ 24.8
CLN3-259ENST00000637551 ANGPTL8Q6UXH0 198 aa16.68■□□□□ 0.26
CLN3-259ENST00000637551 RPTNQ6XPR3 784 aa16.68■□□□□ 0.26
CLN3-259ENST00000637551 SSC4DQ8WTU2 575 aa16.68■□□□□ 0.26
CLN3-259ENST00000637551 JADE3Q92613 823 aa16.68■□□□□ 0.26
CLN3-259ENST00000637551 SLC35G5Q96KT7 338 aa16.68■□□□□ 0.26
CLN3-259ENST00000637551 VKORC1Q9BQB6 163 aa16.68■□□□□ 0.26
CLN3-259ENST00000637551 EBF4Q9BQW3 602 aa16.68■□□□□ 0.26
CLN3-259ENST00000637551 OR2B2Q9GZK3 357 aa16.68■□□□□ 0.26
CLN3-259ENST00000637551 NMUR2Q9GZQ4 415 aa16.68■□□□□ 0.26
CLN3-259ENST00000637551 TP63Q9H3D4 680 aaPredicted RBP16.68■□□□□ 0.26
CLN3-259ENST00000637551 SERHLQ9NQF3 203 aa16.68■□□□□ 0.26
CLN3-259ENST00000637551 SUCOQ9UBS9 1254 aaKnown RBP16.68■□□□□ 0.26
CLN3-259ENST00000637551 PRDM4Q9UKN5 801 aa16.68■□□□□ 0.26
CLN3-259ENST00000637551 OSGIN2Q9Y236 505 aa16.68■□□□□ 0.26
CLN3-259ENST00000637551 NCKAP5O14513 1909 aa16.68■□□□□ 0.26
CLN3-259ENST00000637551 PCNX1Q96RV3 2341 aa16.68■□□□□ 0.26
CLN3-259ENST00000637551 CENPEQ02224 2701 aa16.68■□□□□ 0.26
CLN3-259ENST00000637551 PHF3Q92576 2039 aaKnown RBP16.67■□□□□ 0.26
CLN3-259ENST00000637551 FIGNL2A6NMB9 653 aa16.67■□□□□ 0.26
CLN3-259ENST00000637551 RFXANKO14593 260 aa16.67■□□□□ 0.26
CLN3-259ENST00000637551 AGFG2O95081 481 aa16.67■□□□□ 0.26
CLN3-259ENST00000637551 UTS2O95399 124 aa16.67■□□□□ 0.26
CLN3-259ENST00000637551 KRT75O95678 551 aa16.67■□□□□ 0.26
CLN3-259ENST00000637551 EFNA1P20827 205 aaPredicted RBP16.67■□□□□ 0.26
CLN3-259ENST00000637551 ATP6V1C1P21283 382 aa16.67■□□□□ 0.26
CLN3-259ENST00000637551 MDH1P40925 334 aaKnown RBP16.67■□□□□ 0.26
CLN3-259ENST00000637551 RFC3P40938 356 aa16.67■□□□□ 0.26
CLN3-259ENST00000637551 KHKP50053 298 aa16.67■□□□□ 0.26
CLN3-259ENST00000637551 GLYR1Q49A26 553 aaPredicted RBP16.67■□□□□ 0.26
CLN3-259ENST00000637551 DCST2Q5T1A1 773 aa16.67■□□□□ 0.26
CLN3-259ENST00000637551 ATAD3BQ5T9A4 648 aa16.67■□□□□ 0.26
CLN3-259ENST00000637551 BICRALQ6AI39 1079 aa16.67■□□□□ 0.26
CLN3-259ENST00000637551 HEPHL1Q6MZM0 1159 aa16.67■□□□□ 0.26
CLN3-259ENST00000637551 BLOC1S3Q6QNY0 202 aa16.67■□□□□ 0.26
CLN3-259ENST00000637551 FADS6Q8N9I5 356 aa16.67■□□□□ 0.26
CLN3-259ENST00000637551 WDSUB1Q8N9V3 476 aa16.67■□□□□ 0.26
CLN3-259ENST00000637551 PIK3R3Q92569 461 aa16.67■□□□□ 0.26
CLN3-259ENST00000637551 C16orf58Q96GQ5 468 aa16.67■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms