RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 KIAA1143Q96AT1 154 aaPredicted RBP10.38□□□□□ -0.75
CLN3-244ENST00000636147 ZNF471Q9BX82 626 aaPredicted RBP10.38□□□□□ -0.75
CLN3-244ENST00000636147 NXF2Q9GZY0 626 aaKnown RBP10.38□□□□□ -0.75
CLN3-244ENST00000636147 LMAN2LQ9H0V9 348 aa10.38□□□□□ -0.75
CLN3-244ENST00000636147 SLC6A15Q9H2J7 730 aa10.38□□□□□ -0.75
CLN3-244ENST00000636147 TMEM38AQ9H6F2 299 aa10.38□□□□□ -0.75
CLN3-244ENST00000636147 TMEM27Q9HBJ8 222 aa10.38□□□□□ -0.75
CLN3-244ENST00000636147 ZDHHC4Q9NPG8 344 aa10.38□□□□□ -0.75
CLN3-244ENST00000636147 SPATA6Q9NWH7 488 aaPredicted RBP10.38□□□□□ -0.75
CLN3-244ENST00000636147 FLVCR2Q9UPI3 526 aa10.38□□□□□ -0.75
CLN3-244ENST00000636147 TRBV2A0A0J9YWF9 115 aa10.38□□□□□ -0.75
CLN3-244ENST00000636147 TRDV1A0A1B0GX56 115 aa10.38□□□□□ -0.75
CLN3-244ENST00000636147 NDUFS4O43181 175 aa10.38□□□□□ -0.75
CLN3-244ENST00000636147 SCN2BO60939 215 aa10.38□□□□□ -0.75
CLN3-244ENST00000636147 SIX6O95475 246 aa10.38□□□□□ -0.75
CLN3-244ENST00000636147 SLC2A10O95528 541 aa10.38□□□□□ -0.75
CLN3-244ENST00000636147 NT5EP21589 574 aa10.38□□□□□ -0.75
CLN3-244ENST00000636147 NUDT1P36639 197 aa10.38□□□□□ -0.75
CLN3-244ENST00000636147 EPHA5P54756 1037 aa10.38□□□□□ -0.75
CLN3-244ENST00000636147 ERVK-25P63136 954 aa10.38□□□□□ -0.75
CLN3-244ENST00000636147 MINDY4Q4G0A6 757 aa10.38□□□□□ -0.75
CLN3-244ENST00000636147 TMEM69Q5SWH9 247 aa10.38□□□□□ -0.75
CLN3-244ENST00000636147 RASGEF1AQ8N9B8 481 aa10.38□□□□□ -0.75
CLN3-244ENST00000636147 OR5AR1Q8NGP9 310 aa10.38□□□□□ -0.75
CLN3-244ENST00000636147 OR5J2Q8NH18 312 aa10.38□□□□□ -0.75
CLN3-244ENST00000636147 SEC22CQ9BRL7 303 aa10.38□□□□□ -0.75
CLN3-244ENST00000636147 PCDHB16Q9NRJ7 776 aa10.38□□□□□ -0.75
CLN3-244ENST00000636147 COPZ2Q9P299 210 aa10.38□□□□□ -0.75
CLN3-244ENST00000636147 MBD2Q9UBB5 411 aa10.38□□□□□ -0.75
CLN3-244ENST00000636147 QSER1Q2KHR3 1735 aa10.38□□□□□ -0.75
CLN3-244ENST00000636147 LRRC72A6NJI9 287 aa10.38□□□□□ -0.75
CLN3-244ENST00000636147 CFL1P23528 166 aaKnown RBP10.38□□□□□ -0.75
CLN3-244ENST00000636147 WASP42768 502 aa10.38□□□□□ -0.75
CLN3-244ENST00000636147 SLC6A11P48066 632 aa10.38□□□□□ -0.75
CLN3-244ENST00000636147 ZNF234Q14588 700 aa10.38□□□□□ -0.75
CLN3-244ENST00000636147 PUM1Q14671 1186 aaKnown RBP eCLIP10.38□□□□□ -0.75
CLN3-244ENST00000636147 MLIPQ5VWP3 458 aa10.38□□□□□ -0.75
CLN3-244ENST00000636147 POMZP3Q6PJE2 187 aa10.38□□□□□ -0.75
CLN3-244ENST00000636147 RPTNQ6XPR3 784 aa10.38□□□□□ -0.75
CLN3-244ENST00000636147 C17orf107Q6ZR85 190 aa10.38□□□□□ -0.75
CLN3-244ENST00000636147 UBE2Q1Q7Z7E8 422 aa10.38□□□□□ -0.75
CLN3-244ENST00000636147 C2orf15Q8WU43 125 aaKnown RBP10.38□□□□□ -0.75
CLN3-244ENST00000636147 FCAMRQ8WWV6 532 aa10.38□□□□□ -0.75
CLN3-244ENST00000636147 S100A16Q96FQ6 103 aaKnown RBP10.38□□□□□ -0.75
CLN3-244ENST00000636147 C16orf58Q96GQ5 468 aa10.38□□□□□ -0.75
CLN3-244ENST00000636147 DPH7Q9BTV6 452 aa10.38□□□□□ -0.75
CLN3-244ENST00000636147 TMEM185BQ9H7F4 350 aa10.38□□□□□ -0.75
CLN3-244ENST00000636147 MYNNQ9NPC7 610 aa10.38□□□□□ -0.75
CLN3-244ENST00000636147 SCP2D1Q9UJQ7 156 aa10.38□□□□□ -0.75
CLN3-244ENST00000636147 ASB4Q9Y574 426 aa10.38□□□□□ -0.75
CLN3-244ENST00000636147 ZNF638Q14966 1978 aaKnown RBP10.37□□□□□ -0.75
CLN3-244ENST00000636147 DISC1C4P0D8 188 aa10.37□□□□□ -0.75
CLN3-244ENST00000636147 C1SP09871 688 aa10.37□□□□□ -0.75
CLN3-244ENST00000636147 ACP5P13686 325 aa10.37□□□□□ -0.75
CLN3-244ENST00000636147 GABRB1P18505 474 aa10.37□□□□□ -0.75
CLN3-244ENST00000636147 TRIM23P36406 574 aa10.37□□□□□ -0.75
CLN3-244ENST00000636147 CD79BP40259 229 aa10.37□□□□□ -0.75
CLN3-244ENST00000636147 DGCR2P98153 550 aa10.37□□□□□ -0.75
CLN3-244ENST00000636147 CCDC157Q569K6 752 aa10.37□□□□□ -0.75
CLN3-244ENST00000636147 KHDRBS2Q5VWX1 349 aaKnown RBP10.37□□□□□ -0.75
CLN3-244ENST00000636147 SFXN4Q6P4A7 337 aa10.37□□□□□ -0.75
CLN3-244ENST00000636147 OR4N5Q8IXE1 308 aa10.37□□□□□ -0.75
CLN3-244ENST00000636147 FAM26EQ8N5C1 309 aa10.37□□□□□ -0.75
CLN3-244ENST00000636147 BBS1Q8NFJ9 593 aa10.37□□□□□ -0.75
CLN3-244ENST00000636147 TRIM43Q96BQ3 446 aaPredicted RBP10.37□□□□□ -0.75
CLN3-244ENST00000636147 ZMYND19Q96E35 227 aaPredicted RBP10.37□□□□□ -0.75
CLN3-244ENST00000636147 C4orf36Q96KX1 117 aa10.37□□□□□ -0.75
CLN3-244ENST00000636147 ZNF558Q96NG5 402 aa10.37□□□□□ -0.75
CLN3-244ENST00000636147 WDFY2Q96P53 400 aa10.37□□□□□ -0.75
CLN3-244ENST00000636147 TSNAXQ99598 290 aaKnown RBP10.37□□□□□ -0.75
CLN3-244ENST00000636147 ACTR6Q9GZN1 396 aa10.37□□□□□ -0.75
CLN3-244ENST00000636147 EXO5Q9H790 373 aa10.37□□□□□ -0.75
CLN3-244ENST00000636147 SYNPO2LQ9H987 977 aa10.37□□□□□ -0.75
CLN3-244ENST00000636147 SLC35C2Q9NQQ7 365 aa10.37□□□□□ -0.75
CLN3-244ENST00000636147 POT1Q9NUX5 634 aa10.37□□□□□ -0.75
CLN3-244ENST00000636147 NLGN3Q9NZ94 848 aa10.37□□□□□ -0.75
CLN3-244ENST00000636147 ANKRD31Q8N7Z5 1873 aa10.37□□□□□ -0.75
CLN3-244ENST00000636147 A0A1W2PRQ8 180 aa10.37□□□□□ -0.75
CLN3-244ENST00000636147 OR14I1A6ND48 311 aa10.37□□□□□ -0.75
CLN3-244ENST00000636147 MEIS3P1A6NDR6 274 aa10.37□□□□□ -0.75
CLN3-244ENST00000636147 SERPINA3P01011 423 aa10.37□□□□□ -0.75
CLN3-244ENST00000636147 ZNF3P17036 446 aa10.37□□□□□ -0.75
CLN3-244ENST00000636147 M6PRP20645 277 aa10.37□□□□□ -0.75
CLN3-244ENST00000636147 PSMB5P28074 263 aa10.37□□□□□ -0.75
CLN3-244ENST00000636147 PSMB10P40306 273 aa10.37□□□□□ -0.75
CLN3-244ENST00000636147 MAPK9P45984 424 aa10.37□□□□□ -0.75
CLN3-244ENST00000636147 KCNJ5P48544 419 aa10.37□□□□□ -0.75
CLN3-244ENST00000636147 ERVFC1P60507 584 aa10.37□□□□□ -0.75
CLN3-244ENST00000636147 B4GALNT1Q00973 533 aa10.37□□□□□ -0.75
CLN3-244ENST00000636147 SLC22A10Q63ZE4 541 aa10.37□□□□□ -0.75
CLN3-244ENST00000636147 C18orf63Q68DL7 685 aa10.37□□□□□ -0.75
CLN3-244ENST00000636147 ZNF783Q6ZMS7 281 aa10.37□□□□□ -0.75
CLN3-244ENST00000636147 SUN3Q8TAQ9 357 aa10.37□□□□□ -0.75
CLN3-244ENST00000636147 PLA2G12AQ9BZM1 189 aa10.37□□□□□ -0.75
CLN3-244ENST00000636147 B3GAT2Q9NPZ5 323 aa10.37□□□□□ -0.75
CLN3-244ENST00000636147 CALML5Q9NZT1 146 aa10.37□□□□□ -0.75
CLN3-244ENST00000636147 PLCL2Q9UPR0 1127 aa10.37□□□□□ -0.75
CLN3-244ENST00000636147 CHST2Q9Y4C5 530 aa10.37□□□□□ -0.75
CLN3-244ENST00000636147 LATO43561 262 aa10.37□□□□□ -0.75
CLN3-244ENST00000636147 F11P03951 625 aa10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 76.1 ms