RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 PSRC1Q6PGN9 363 aaPredicted RBP11.92□□□□□ -0.5
LINC00540-203ENST00000631321 LHFPL3Q86UP9 236 aa11.92□□□□□ -0.5
LINC00540-203ENST00000631321 NRMQ8IXM6 262 aa11.92□□□□□ -0.5
LINC00540-203ENST00000631321 KLHL36Q8N4N3 616 aa11.92□□□□□ -0.5
LINC00540-203ENST00000631321 OR7G2Q8NG99 324 aa11.92□□□□□ -0.5
LINC00540-203ENST00000631321 OR4F15Q8NGB8 312 aa11.92□□□□□ -0.5
LINC00540-203ENST00000631321 NT5CQ8TCD5 201 aa11.92□□□□□ -0.5
LINC00540-203ENST00000631321 GANCQ8TET4 914 aa11.92□□□□□ -0.5
LINC00540-203ENST00000631321 MMP28Q9H239 520 aa11.92□□□□□ -0.5
LINC00540-203ENST00000631321 RERGLQ9H628 205 aa11.92□□□□□ -0.5
LINC00540-203ENST00000631321 NLGN3Q9NZ94 848 aa11.92□□□□□ -0.5
LINC00540-203ENST00000631321 OR6C2Q9NZP2 312 aa11.92□□□□□ -0.5
LINC00540-203ENST00000631321 CBLCQ9ULV8 474 aa11.92□□□□□ -0.5
LINC00540-203ENST00000631321 CLCA2Q9UQC9 943 aa11.92□□□□□ -0.5
LINC00540-203ENST00000631321 POLHQ9Y253 713 aa11.92□□□□□ -0.5
LINC00540-203ENST00000631321 NTNG1Q9Y2I2 539 aa11.92□□□□□ -0.5
LINC00540-203ENST00000631321 GPSM3Q9Y4H4 160 aa11.92□□□□□ -0.5
LINC00540-203ENST00000631321 GPR4P46093 362 aa11.92□□□□□ -0.5
LINC00540-203ENST00000631321 RPS15AP62244 130 aaKnown RBP11.92□□□□□ -0.5
LINC00540-203ENST00000631321 HOXC5Q00444 222 aa11.92□□□□□ -0.5
LINC00540-203ENST00000631321 ZFP69Q49AA0 526 aa11.92□□□□□ -0.5
LINC00540-203ENST00000631321 TJAP1Q5JTD0 557 aa11.92□□□□□ -0.5
LINC00540-203ENST00000631321 VASNQ6EMK4 673 aa11.92□□□□□ -0.5
LINC00540-203ENST00000631321 TYW3Q6IPR3 259 aaKnown RBP11.92□□□□□ -0.5
LINC00540-203ENST00000631321 FAM111BQ6SJ93 734 aa11.92□□□□□ -0.5
LINC00540-203ENST00000631321 SAMD14Q8IZD0 417 aaPredicted RBP11.92□□□□□ -0.5
LINC00540-203ENST00000631321 OR2L13Q8N349 312 aa11.92□□□□□ -0.5
LINC00540-203ENST00000631321 CAMKK1Q8N5S9 505 aa11.92□□□□□ -0.5
LINC00540-203ENST00000631321 ZFP41Q8N8Y5 198 aa11.92□□□□□ -0.5
LINC00540-203ENST00000631321 OR2T33Q8NG76 320 aa11.92□□□□□ -0.5
LINC00540-203ENST00000631321 DNAJA4Q8WW22 397 aaPredicted RBP11.92□□□□□ -0.5
LINC00540-203ENST00000631321 SLC7A6Q92536 515 aa11.92□□□□□ -0.5
LINC00540-203ENST00000631321 DCLRE1CQ96SD1 692 aaKnown RBP11.92□□□□□ -0.5
LINC00540-203ENST00000631321 ATF6BQ99941 703 aa11.92□□□□□ -0.5
LINC00540-203ENST00000631321 GDF15Q99988 308 aa11.92□□□□□ -0.5
LINC00540-203ENST00000631321 C6orf106Q9H6K1 298 aaPredicted RBP11.92□□□□□ -0.5
LINC00540-203ENST00000631321 SFXN1Q9H9B4 322 aa11.92□□□□□ -0.5
LINC00540-203ENST00000631321 KLF15Q9UIH9 416 aa11.92□□□□□ -0.5
LINC00540-203ENST00000631321 CASKO14936 926 aa11.91□□□□□ -0.5
LINC00540-203ENST00000631321 CH25HO95992 272 aa11.91□□□□□ -0.5
LINC00540-203ENST00000631321 NDUFV2P19404 249 aa11.91□□□□□ -0.5
LINC00540-203ENST00000631321 CFL1P23528 166 aaKnown RBP11.91□□□□□ -0.5
LINC00540-203ENST00000631321 TNFRSF17Q02223 184 aa11.91□□□□□ -0.5
LINC00540-203ENST00000631321 BDH1Q02338 343 aa11.91□□□□□ -0.5
LINC00540-203ENST00000631321 FZD5Q13467 585 aa11.91□□□□□ -0.5
LINC00540-203ENST00000631321 ARHGAP11BQ3KRB8 267 aa11.91□□□□□ -0.5
LINC00540-203ENST00000631321 EOGTQ5NDL2 527 aa11.91□□□□□ -0.5
LINC00540-203ENST00000631321 LCN1P1Q5VSP4 162 aa11.91□□□□□ -0.5
LINC00540-203ENST00000631321 ZNF776Q68DI1 518 aaPredicted RBP11.91□□□□□ -0.5
LINC00540-203ENST00000631321 MTSS1LQ765P7 747 aa11.91□□□□□ -0.5
LINC00540-203ENST00000631321 LRRC25Q8N386 305 aaPredicted RBP11.91□□□□□ -0.5
LINC00540-203ENST00000631321 SLC16A11Q8NCK7 471 aa11.91□□□□□ -0.5
LINC00540-203ENST00000631321 BRIX1Q8TDN6 353 aaKnown RBP11.91□□□□□ -0.5
LINC00540-203ENST00000631321 TMEM255BQ8WV15 326 aa11.91□□□□□ -0.5
LINC00540-203ENST00000631321 ZC3HAV1LQ96H79 300 aaKnown RBP11.91□□□□□ -0.5
LINC00540-203ENST00000631321 APOOQ9BUR5 198 aa11.91□□□□□ -0.5
LINC00540-203ENST00000631321 SLC17A9Q9BYT1 436 aa11.91□□□□□ -0.5
LINC00540-203ENST00000631321 PRDM9Q9NQV7 894 aa11.91□□□□□ -0.5
LINC00540-203ENST00000631321 NDRG2Q9UN36 371 aaKnown RBP11.91□□□□□ -0.5
LINC00540-203ENST00000631321 COLEC10Q9Y6Z7 277 aa11.91□□□□□ -0.5
LINC00540-203ENST00000631321 LINC00854A0A1B0GVQ3 168 aa11.91□□□□□ -0.5
LINC00540-203ENST00000631321 A0A1W2PQU0 124 aa11.91□□□□□ -0.5
LINC00540-203ENST00000631321 GABRPO00591 440 aa11.91□□□□□ -0.5
LINC00540-203ENST00000631321 PLRG1O43660 514 aaKnown RBP11.91□□□□□ -0.5
LINC00540-203ENST00000631321 PIP5K1CO60331 668 aa11.91□□□□□ -0.5
LINC00540-203ENST00000631321 APODP05090 189 aa11.91□□□□□ -0.5
LINC00540-203ENST00000631321 TCEA1P23193 301 aaKnown RBP11.91□□□□□ -0.5
LINC00540-203ENST00000631321 KIR2DL3P43628 341 aa11.91□□□□□ -0.5
LINC00540-203ENST00000631321 EVX1P49640 407 aa11.91□□□□□ -0.5
LINC00540-203ENST00000631321 ZNF136P52737 540 aa11.91□□□□□ -0.5
LINC00540-203ENST00000631321 CAV3P56539 151 aa11.91□□□□□ -0.5
LINC00540-203ENST00000631321 EEF1A1P68104 462 aaKnown RBP11.91□□□□□ -0.5
LINC00540-203ENST00000631321 HTRA3P83110 453 aa11.91□□□□□ -0.5
LINC00540-203ENST00000631321 RGS1Q08116 209 aa11.91□□□□□ -0.5
LINC00540-203ENST00000631321 TBRG1Q3YBR2 411 aa11.91□□□□□ -0.5
LINC00540-203ENST00000631321 CNIH2Q6PI25 160 aa11.91□□□□□ -0.5
LINC00540-203ENST00000631321 ZNF322Q6U7Q0 402 aaPredicted RBP11.91□□□□□ -0.5
LINC00540-203ENST00000631321 ZNF836Q6ZNA1 936 aa11.91□□□□□ -0.5
LINC00540-203ENST00000631321 GET4Q7L5D6 327 aaPredicted RBP11.91□□□□□ -0.5
LINC00540-203ENST00000631321 C11orf74Q86VG3 221 aa11.91□□□□□ -0.5
LINC00540-203ENST00000631321 AMIGO1Q86WK6 493 aa11.91□□□□□ -0.5
LINC00540-203ENST00000631321 MARCH9Q86YJ5 346 aa11.91□□□□□ -0.5
LINC00540-203ENST00000631321 GATAD2AQ86YP4 633 aa11.91□□□□□ -0.5
LINC00540-203ENST00000631321 KCT2Q8NC54 265 aa11.91□□□□□ -0.5
LINC00540-203ENST00000631321 ATP6V1C2Q8NEY4 427 aa11.91□□□□□ -0.5
LINC00540-203ENST00000631321 BBS1Q8NFJ9 593 aa11.91□□□□□ -0.5
LINC00540-203ENST00000631321 CDS1Q92903 461 aa11.91□□□□□ -0.5
LINC00540-203ENST00000631321 FRMD6Q96NE9 622 aa11.91□□□□□ -0.5
LINC00540-203ENST00000631321 RNF121Q9H920 327 aa11.91□□□□□ -0.5
LINC00540-203ENST00000631321 DDX28Q9NUL7 540 aaKnown RBP11.91□□□□□ -0.5
LINC00540-203ENST00000631321 KCMF1Q9P0J7 381 aa11.91□□□□□ -0.5
LINC00540-203ENST00000631321 ZNF232Q9UNY5 417 aa11.91□□□□□ -0.5
LINC00540-203ENST00000631321 PCDHGB7Q9Y5F8 929 aa11.91□□□□□ -0.5
LINC00540-203ENST00000631321 MYO10Q9HD67 2058 aa11.91□□□□□ -0.5
LINC00540-203ENST00000631321 SMIM30A4D0T7 59 aa11.9□□□□□ -0.5
LINC00540-203ENST00000631321 CENPXA8MT69 81 aa11.9□□□□□ -0.5
LINC00540-203ENST00000631321 ISM1B1AKI9 464 aa11.9□□□□□ -0.5
LINC00540-203ENST00000631321 CDC42EP2O14613 210 aa11.9□□□□□ -0.5
LINC00540-203ENST00000631321 TFECO14948 347 aaPredicted RBP11.9□□□□□ -0.5
LINC00540-203ENST00000631321 THBS1P07996 1170 aa11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms