RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 PLGLB1Q02325 96 aa13.22□□□□□ -0.29
CPSF1-212ENST00000616140 ALG10Q5BKT4 473 aa13.22□□□□□ -0.29
CPSF1-212ENST00000616140 BAIAP2L2Q6UXY1 529 aa13.22□□□□□ -0.29
CPSF1-212ENST00000616140 ZER1Q7Z7L7 766 aa13.22□□□□□ -0.29
CPSF1-212ENST00000616140 FTMTQ8N4E7 242 aa13.22□□□□□ -0.29
CPSF1-212ENST00000616140 METTL25Q8N6Q8 603 aa13.22□□□□□ -0.29
CPSF1-212ENST00000616140 ADAMTS16Q8TE57 1224 aa13.22□□□□□ -0.29
CPSF1-212ENST00000616140 ASB15Q8WXK1 588 aa13.22□□□□□ -0.29
CPSF1-212ENST00000616140 SHDQ96IW2 340 aa13.22□□□□□ -0.29
CPSF1-212ENST00000616140 AIFM2Q9BRQ8 373 aa13.22□□□□□ -0.29
CPSF1-212ENST00000616140 AKAP11Q9UKA4 1901 aa13.22□□□□□ -0.29
CPSF1-212ENST00000616140 AK6Q9Y3D8 172 aaKnown RBP13.22□□□□□ -0.29
CPSF1-212ENST00000616140 LOC105369274A0A096LPK9 316 aa13.22□□□□□ -0.29
CPSF1-212ENST00000616140 A0A1B0GVC2 190 aa13.22□□□□□ -0.29
CPSF1-212ENST00000616140 A6NIN4 97 aa13.22□□□□□ -0.29
CPSF1-212ENST00000616140 CLEC3AO75596 197 aa13.22□□□□□ -0.29
CPSF1-212ENST00000616140 APOC3P02656 99 aa13.22□□□□□ -0.29
CPSF1-212ENST00000616140 ZNF91Q05481 1191 aa13.22□□□□□ -0.29
CPSF1-212ENST00000616140 ANKRD54Q6NXT1 300 aa13.22□□□□□ -0.29
CPSF1-212ENST00000616140 SPRED1Q7Z699 444 aa13.22□□□□□ -0.29
CPSF1-212ENST00000616140 TMEM173Q86WV6 379 aaPredicted RBP13.22□□□□□ -0.29
CPSF1-212ENST00000616140 OR4N4Q8N0Y3 316 aa13.22□□□□□ -0.29
CPSF1-212ENST00000616140 OR6Q1Q8NGQ2 317 aa13.22□□□□□ -0.29
CPSF1-212ENST00000616140 ACOT11Q8WXI4 607 aaPredicted RBP13.22□□□□□ -0.29
CPSF1-212ENST00000616140 PRRC1Q96M27 445 aa13.22□□□□□ -0.29
CPSF1-212ENST00000616140 COPZ2Q9P299 210 aa13.22□□□□□ -0.29
CPSF1-212ENST00000616140 PCDH10Q9P2E7 1040 aa13.22□□□□□ -0.29
CPSF1-212ENST00000616140 WASHC1A8K0Z3 465 aa13.22□□□□□ -0.29
CPSF1-212ENST00000616140 J3KTA2 159 aa13.22□□□□□ -0.29
CPSF1-212ENST00000616140 KCNJ13O60928 360 aa13.22□□□□□ -0.29
CPSF1-212ENST00000616140 AHRP35869 848 aa13.22□□□□□ -0.29
CPSF1-212ENST00000616140 PTH2RP49190 550 aa13.22□□□□□ -0.29
CPSF1-212ENST00000616140 COL28A1Q2UY09 1125 aa13.22□□□□□ -0.29
CPSF1-212ENST00000616140 PODNL1Q6PEZ8 512 aa13.22□□□□□ -0.29
CPSF1-212ENST00000616140 WASH2PQ6VEQ5 465 aa13.22□□□□□ -0.29
CPSF1-212ENST00000616140 ZNF440Q8IYI8 595 aa13.22□□□□□ -0.29
CPSF1-212ENST00000616140 BEST3Q8N1M1 668 aa13.22□□□□□ -0.29
CPSF1-212ENST00000616140 RHOXF1Q8NHV9 184 aa13.22□□□□□ -0.29
CPSF1-212ENST00000616140 TRMT2BQ96GJ1 504 aaKnown RBP13.22□□□□□ -0.29
CPSF1-212ENST00000616140 URM1Q9BTM9 101 aaKnown RBP13.22□□□□□ -0.29
CPSF1-212ENST00000616140 PINK1Q9BXM7 581 aa13.22□□□□□ -0.29
CPSF1-212ENST00000616140 SLC39A1Q9NY26 324 aa13.22□□□□□ -0.29
CPSF1-212ENST00000616140 CNOT2Q9NZN8 540 aaKnown RBP13.22□□□□□ -0.29
CPSF1-212ENST00000616140 KCMF1Q9P0J7 381 aa13.22□□□□□ -0.29
CPSF1-212ENST00000616140 TRAV18A0A075B6X5 111 aa13.21□□□□□ -0.29
CPSF1-212ENST00000616140 H7C2Y5 167 aa13.21□□□□□ -0.29
CPSF1-212ENST00000616140 PEX12O00623 359 aa13.21□□□□□ -0.29
CPSF1-212ENST00000616140 PLATP00750 562 aa13.21□□□□□ -0.29
CPSF1-212ENST00000616140 PRKXP51817 358 aa13.21□□□□□ -0.29
CPSF1-212ENST00000616140 WDR5P61964 334 aaKnown RBP13.21□□□□□ -0.29
CPSF1-212ENST00000616140 DSC1Q08554 894 aa13.21□□□□□ -0.29
CPSF1-212ENST00000616140 ARHGAP19Q14CB8 494 aa13.21□□□□□ -0.29
CPSF1-212ENST00000616140 UBE2UQ5VVX9 321 aa13.21□□□□□ -0.29
CPSF1-212ENST00000616140 CARD17Q5XLA6 110 aa13.21□□□□□ -0.29
CPSF1-212ENST00000616140 SLC22A10Q63ZE4 541 aa13.21□□□□□ -0.29
CPSF1-212ENST00000616140 GGHQ92820 318 aa13.21□□□□□ -0.29
CPSF1-212ENST00000616140 TREX2Q9BQ50 279 aaPredicted RBP13.21□□□□□ -0.29
CPSF1-212ENST00000616140 DDX31Q9H8H2 851 aaKnown RBP13.21□□□□□ -0.29
CPSF1-212ENST00000616140 B3GAT2Q9NPZ5 323 aa13.21□□□□□ -0.29
CPSF1-212ENST00000616140 POT1Q9NUX5 634 aa13.21□□□□□ -0.29
CPSF1-212ENST00000616140 GPR34Q9UPC5 381 aa13.21□□□□□ -0.29
CPSF1-212ENST00000616140 PIAS3Q9Y6X2 628 aa13.21□□□□□ -0.29
CPSF1-212ENST00000616140 A0A1W2PQ09 198 aa13.21□□□□□ -0.29
CPSF1-212ENST00000616140 TP53I11O14683 189 aa13.21□□□□□ -0.29
CPSF1-212ENST00000616140 ZNF888P0CJ79 500 aaPredicted RBP13.21□□□□□ -0.29
CPSF1-212ENST00000616140 HIST1H1TP22492 207 aaPredicted RBP13.21□□□□□ -0.29
CPSF1-212ENST00000616140 TNFSF8P32971 234 aa13.21□□□□□ -0.29
CPSF1-212ENST00000616140 PRLHRP49683 370 aa13.21□□□□□ -0.29
CPSF1-212ENST00000616140 GRM7Q14831 915 aa13.21□□□□□ -0.29
CPSF1-212ENST00000616140 ISL2Q96A47 359 aa13.21□□□□□ -0.29
CPSF1-212ENST00000616140 LMF1Q96S06 567 aa13.21□□□□□ -0.29
CPSF1-212ENST00000616140 ZNF334Q9HCZ1 680 aaPredicted RBP13.21□□□□□ -0.29
CPSF1-212ENST00000616140 CUEDC1Q9NWM3 386 aaPredicted RBP13.21□□□□□ -0.29
CPSF1-212ENST00000616140 PARPBPQ9NWS1 579 aa13.21□□□□□ -0.29
CPSF1-212ENST00000616140 MICAL3Q7RTP6 2002 aa13.21□□□□□ -0.29
CPSF1-212ENST00000616140 HHLA1C9JL84 531 aa13.21□□□□□ -0.29
CPSF1-212ENST00000616140 THEGLP0DJG4 465 aa13.21□□□□□ -0.29
CPSF1-212ENST00000616140 CSNK1DP48730 415 aa13.21□□□□□ -0.29
CPSF1-212ENST00000616140 SLC7A9P82251 487 aa13.21□□□□□ -0.29
CPSF1-212ENST00000616140 RAB40BQ12829 278 aa13.21□□□□□ -0.29
CPSF1-212ENST00000616140 UBQLNLQ8IYU4 475 aa13.21□□□□□ -0.29
CPSF1-212ENST00000616140 ZNF740Q8NDX6 193 aa13.21□□□□□ -0.29
CPSF1-212ENST00000616140 STOML3Q8TAV4 291 aa13.21□□□□□ -0.29
CPSF1-212ENST00000616140 SLC25A44Q96H78 314 aaPredicted RBP13.21□□□□□ -0.29
CPSF1-212ENST00000616140 TEX37Q96LM6 180 aa13.21□□□□□ -0.29
CPSF1-212ENST00000616140 OR1F2PQ96R84 312 aa13.21□□□□□ -0.29
CPSF1-212ENST00000616140 DKKL1Q9UK85 242 aa13.21□□□□□ -0.29
CPSF1-212ENST00000616140 IER3IP1Q9Y5U9 82 aa13.21□□□□□ -0.29
CPSF1-212ENST00000616140 FARS2O95363 451 aaKnown RBP13.21□□□□□ -0.3
CPSF1-212ENST00000616140 GYPBP06028 91 aa13.21□□□□□ -0.3
CPSF1-212ENST00000616140 ARNTP27540 789 aa13.21□□□□□ -0.3
CPSF1-212ENST00000616140 RORAP35398 523 aa13.21□□□□□ -0.3
CPSF1-212ENST00000616140 CLDN2P57739 230 aa13.21□□□□□ -0.3
CPSF1-212ENST00000616140 CDK3Q00526 305 aa13.21□□□□□ -0.3
CPSF1-212ENST00000616140 WDR45BQ5MNZ6 344 aa13.21□□□□□ -0.3
CPSF1-212ENST00000616140 CCNJQ5T5M9 372 aa13.21□□□□□ -0.3
CPSF1-212ENST00000616140 C1orf189Q5VU69 101 aa13.21□□□□□ -0.3
CPSF1-212ENST00000616140 OR52E1Q8NGJ3 308 aa13.21□□□□□ -0.3
CPSF1-212ENST00000616140 SPRYD4Q8WW59 207 aaPredicted RBP13.21□□□□□ -0.3
CPSF1-212ENST00000616140 FKBP10Q96AY3 582 aa13.21□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms