RNA–Protein interactions for RNA: ENST00000606749.1

CUX1-219, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-219ENST00000606749 STARD4Q96DR4 205 aa6.88□□□□□ -1.31
CUX1-219ENST00000606749 PGM2Q96G03 612 aa6.88□□□□□ -1.31
CUX1-219ENST00000606749 METTL2AQ96IZ6 378 aaKnown RBP6.88□□□□□ -1.31
CUX1-219ENST00000606749 YIPF4Q9BSR8 244 aa6.88□□□□□ -1.31
CUX1-219ENST00000606749 LMF2Q9BU23 707 aaKnown RBP6.88□□□□□ -1.31
CUX1-219ENST00000606749 Q9N2J8 555 aa6.88□□□□□ -1.31
CUX1-219ENST00000606749 DDX18Q9NVP1 670 aaKnown RBP6.88□□□□□ -1.31
CUX1-219ENST00000606749 C1orf109Q9NX04 203 aa6.88□□□□□ -1.31
CUX1-219ENST00000606749 FAM120CQ9NX05 1096 aaKnown RBP6.88□□□□□ -1.31
CUX1-219ENST00000606749 NDRG3Q9UGV2 375 aa6.88□□□□□ -1.31
CUX1-219ENST00000606749 MRTO4Q9UKD2 239 aaKnown RBP6.88□□□□□ -1.31
CUX1-219ENST00000606749 PACSIN3Q9UKS6 424 aa6.88□□□□□ -1.31
CUX1-219ENST00000606749 ABCG2Q9UNQ0 655 aa6.88□□□□□ -1.31
CUX1-219ENST00000606749 AKAP6Q13023 2319 aa6.88□□□□□ -1.31
CUX1-219ENST00000606749 IGLV3-32A0A0A0MS00 114 aa6.87□□□□□ -1.31
CUX1-219ENST00000606749 GXYLT2A0PJZ3 443 aa6.87□□□□□ -1.31
CUX1-219ENST00000606749 SLC22A20A6NK97 555 aa6.87□□□□□ -1.31
CUX1-219ENST00000606749 TTC36A6NLP5 189 aa6.87□□□□□ -1.31
CUX1-219ENST00000606749 SMNDC1O75940 238 aaKnown RBP eCLIP6.87□□□□□ -1.31
CUX1-219ENST00000606749 UTS2O95399 124 aa6.87□□□□□ -1.31
CUX1-219ENST00000606749 CGAP01215 116 aa6.87□□□□□ -1.31
CUX1-219ENST00000606749 IGKV1D-16P01601 117 aa6.87□□□□□ -1.31
CUX1-219ENST00000606749 IFI6P09912 130 aa6.87□□□□□ -1.31
CUX1-219ENST00000606749 KRT4P19013 534 aa6.87□□□□□ -1.31
CUX1-219ENST00000606749 CD53P19397 219 aa6.87□□□□□ -1.31
CUX1-219ENST00000606749 MAP3K8P41279 467 aa6.87□□□□□ -1.31
CUX1-219ENST00000606749 RFX3P48380 749 aa6.87□□□□□ -1.31
CUX1-219ENST00000606749 PCYT1AP49585 367 aa6.87□□□□□ -1.31
CUX1-219ENST00000606749 CLK3P49761 638 aaKnown RBP6.87□□□□□ -1.31
CUX1-219ENST00000606749 PSMD4P55036 377 aaKnown RBP6.87□□□□□ -1.31
CUX1-219ENST00000606749 EEFSECP57772 596 aaKnown RBP6.87□□□□□ -1.31
CUX1-219ENST00000606749 PRR5P85299 388 aa6.87□□□□□ -1.31
CUX1-219ENST00000606749 SLC18A2Q05940 514 aa6.87□□□□□ -1.31
CUX1-219ENST00000606749 C17orf67Q0P5P2 114 aa6.87□□□□□ -1.31
CUX1-219ENST00000606749 FOXD4Q12950 439 aaPredicted RBP6.87□□□□□ -1.31
CUX1-219ENST00000606749 STX5Q13190 355 aa6.87□□□□□ -1.31
CUX1-219ENST00000606749 KEAP1Q14145 624 aa6.87□□□□□ -1.31
CUX1-219ENST00000606749 POU4F3Q15319 338 aa6.87□□□□□ -1.31
CUX1-219ENST00000606749 ZNHIT3Q15649 155 aaPredicted RBP6.87□□□□□ -1.31
CUX1-219ENST00000606749 TMEM44Q2T9K0 475 aa6.87□□□□□ -1.31
CUX1-219ENST00000606749 RFTN2Q52LD8 501 aaPredicted RBP6.87□□□□□ -1.31
CUX1-219ENST00000606749 RAET1LQ5VY80 246 aa6.87□□□□□ -1.31
CUX1-219ENST00000606749 LIPMQ5VYY2 423 aa6.87□□□□□ -1.31
CUX1-219ENST00000606749 OR2A2Q6IF42 318 aa6.87□□□□□ -1.31
CUX1-219ENST00000606749 ANKRD26P1Q6NSI1 321 aa6.87□□□□□ -1.31
CUX1-219ENST00000606749 VWA1Q6PCB0 445 aa6.87□□□□□ -1.31
CUX1-219ENST00000606749 ZNF474Q6S9Z5 364 aaPredicted RBP6.87□□□□□ -1.31
CUX1-219ENST00000606749 C10orf107Q8IVU9 208 aa6.87□□□□□ -1.31
CUX1-219ENST00000606749 MEIOBQ8N635 442 aa6.87□□□□□ -1.31
CUX1-219ENST00000606749 CNEP1R1Q8N9A8 125 aa6.87□□□□□ -1.31
CUX1-219ENST00000606749 CCDC63Q8NA47 563 aa6.87□□□□□ -1.31
CUX1-219ENST00000606749 LRRN4CLQ8ND94 238 aa6.87□□□□□ -1.31
CUX1-219ENST00000606749 OR2T11Q8NH01 316 aa6.87□□□□□ -1.31
CUX1-219ENST00000606749 OR4C3Q8NH37 302 aa6.87□□□□□ -1.31
CUX1-219ENST00000606749 UBLCP1Q8WVY7 318 aaPredicted RBP6.87□□□□□ -1.31
CUX1-219ENST00000606749 SMPDL3BQ92485 455 aa6.87□□□□□ -1.31
CUX1-219ENST00000606749 FIG4Q92562 907 aa6.87□□□□□ -1.31
CUX1-219ENST00000606749 PIK3R3Q92569 461 aa6.87□□□□□ -1.31
CUX1-219ENST00000606749 GFM2Q969S9 779 aaKnown RBP6.87□□□□□ -1.31
CUX1-219ENST00000606749 CIDECQ96AQ7 238 aaPredicted RBP6.87□□□□□ -1.31
CUX1-219ENST00000606749 C1GALT1C1Q96EU7 318 aa6.87□□□□□ -1.31
CUX1-219ENST00000606749 WFIKKN1Q96NZ8 548 aa6.87□□□□□ -1.31
CUX1-219ENST00000606749 PIGQQ9BRB3 760 aa6.87□□□□□ -1.31
CUX1-219ENST00000606749 PINK1Q9BXM7 581 aa6.87□□□□□ -1.31
CUX1-219ENST00000606749 TUBB1Q9H4B7 451 aa6.87□□□□□ -1.31
CUX1-219ENST00000606749 PTGES2Q9H7Z7 377 aa6.87□□□□□ -1.31
CUX1-219ENST00000606749 RNF122Q9H9V4 155 aa6.87□□□□□ -1.31
CUX1-219ENST00000606749 PPCSQ9HAB8 311 aa6.87□□□□□ -1.31
CUX1-219ENST00000606749 C3orf14Q9HBI5 128 aa6.87□□□□□ -1.31
CUX1-219ENST00000606749 LRTM1Q9HBL6 345 aa6.87□□□□□ -1.31
CUX1-219ENST00000606749 DLL4Q9NR61 685 aa6.87□□□□□ -1.31
CUX1-219ENST00000606749 NTMQ9P121 344 aa6.87□□□□□ -1.31
CUX1-219ENST00000606749 BAIAP2L1Q9UHR4 511 aa6.87□□□□□ -1.31
CUX1-219ENST00000606749 PTGDR2Q9Y5Y4 395 aa6.87□□□□□ -1.31
CUX1-219ENST00000606749 AP4B1Q9Y6B7 739 aa6.87□□□□□ -1.31
CUX1-219ENST00000606749 ITPR3Q14573 2671 aa6.87□□□□□ -1.31
CUX1-219ENST00000606749 C2CD3Q4AC94 2353 aa6.87□□□□□ -1.31
CUX1-219ENST00000606749 ZFHX3Q15911 3703 aa6.86□□□□□ -1.31
CUX1-219ENST00000606749 HRNRQ86YZ3 2850 aaPredicted RBP6.86□□□□□ -1.31
CUX1-219ENST00000606749 MAP1AP78559 2803 aaPredicted RBP6.86□□□□□ -1.31
CUX1-219ENST00000606749 GIMAP1-GIMAP5A0A087WTJ2 511 aa6.86□□□□□ -1.31
CUX1-219ENST00000606749 OR2M5A3KFT3 312 aa6.86□□□□□ -1.31
CUX1-219ENST00000606749 SMIM23A6NLE4 172 aa6.86□□□□□ -1.31
CUX1-219ENST00000606749 H3BML4 177 aa6.86□□□□□ -1.31
CUX1-219ENST00000606749 COPEO14579 308 aa6.86□□□□□ -1.31
CUX1-219ENST00000606749 AZIN1O14977 448 aa6.86□□□□□ -1.31
CUX1-219ENST00000606749 CTIFO43310 598 aaKnown RBP6.86□□□□□ -1.31
CUX1-219ENST00000606749 EMC8O43402 210 aa6.86□□□□□ -1.31
CUX1-219ENST00000606749 RGS14O43566 566 aa6.86□□□□□ -1.31
CUX1-219ENST00000606749 AKAP10O43572 662 aa6.86□□□□□ -1.31
CUX1-219ENST00000606749 TBX19O60806 448 aa6.86□□□□□ -1.31
CUX1-219ENST00000606749 TRIM13O60858 407 aa6.86□□□□□ -1.31
CUX1-219ENST00000606749 NKX2-2O95096 273 aa6.86□□□□□ -1.31
CUX1-219ENST00000606749 KCNH1O95259 989 aa6.86□□□□□ -1.31
CUX1-219ENST00000606749 ANGPTL1O95841 491 aa6.86□□□□□ -1.31
CUX1-219ENST00000606749 FGF4P08620 206 aa6.86□□□□□ -1.31
CUX1-219ENST00000606749 LINC00032P0C843 101 aa6.86□□□□□ -1.31
CUX1-219ENST00000606749 PRPS2P11908 318 aa6.86□□□□□ -1.31
CUX1-219ENST00000606749 FOSL1P15407 271 aa6.86□□□□□ -1.31
CUX1-219ENST00000606749 HOXC12P31275 282 aa6.86□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms