RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 TTC9Q92623 222 aa13.21□□□□□ -0.29
UPF1-211ENST00000600868 EFHD2Q96C19 240 aaPredicted RBP13.21□□□□□ -0.29
UPF1-211ENST00000600868 ADOQ96SZ5 270 aa13.21□□□□□ -0.29
UPF1-211ENST00000600868 HOXD1Q9GZZ0 328 aa13.21□□□□□ -0.29
UPF1-211ENST00000600868 RNF32Q9H0A6 362 aa13.21□□□□□ -0.29
UPF1-211ENST00000600868 MUC13Q9H3R2 512 aa13.21□□□□□ -0.29
UPF1-211ENST00000600868 RUBCNLQ9H714 662 aa13.21□□□□□ -0.29
UPF1-211ENST00000600868 MTHFD2LQ9H903 347 aaPredicted RBP13.21□□□□□ -0.29
UPF1-211ENST00000600868 SUCOQ9UBS9 1254 aaKnown RBP13.21□□□□□ -0.29
UPF1-211ENST00000600868 WDR45Q9Y484 360 aa13.21□□□□□ -0.29
UPF1-211ENST00000600868 PCDHGA9Q9Y5G4 932 aaKnown RBP13.21□□□□□ -0.29
UPF1-211ENST00000600868 PCDHGA10Q9Y5H3 936 aa13.21□□□□□ -0.29
UPF1-211ENST00000600868 DSPPQ9NZW4 1301 aa13.2□□□□□ -0.3
UPF1-211ENST00000600868 ERICH4A6NGS2 130 aa13.2□□□□□ -0.3
UPF1-211ENST00000600868 NPIPB9F8W1W9 429 aa13.2□□□□□ -0.3
UPF1-211ENST00000600868 HS6ST1O60243 411 aa13.2□□□□□ -0.3
UPF1-211ENST00000600868 KIAA0513O60268 411 aa13.2□□□□□ -0.3
UPF1-211ENST00000600868 UGT2B11O75310 529 aa13.2□□□□□ -0.3
UPF1-211ENST00000600868 PDE5AO76074 875 aa13.2□□□□□ -0.3
UPF1-211ENST00000600868 ALPPP05187 535 aa13.2□□□□□ -0.3
UPF1-211ENST00000600868 CYP4B1P13584 511 aa13.2□□□□□ -0.3
UPF1-211ENST00000600868 GGT1P19440 569 aa13.2□□□□□ -0.3
UPF1-211ENST00000600868 TCN1P20061 433 aaPredicted RBP13.2□□□□□ -0.3
UPF1-211ENST00000600868 RFX3P48380 749 aa13.2□□□□□ -0.3
UPF1-211ENST00000600868 HLCSP50747 726 aa13.2□□□□□ -0.3
UPF1-211ENST00000600868 PCBP3P57721 371 aaKnown RBP13.2□□□□□ -0.3
UPF1-211ENST00000600868 RAPSNQ13702 412 aa13.2□□□□□ -0.3
UPF1-211ENST00000600868 TRIM25Q14258 630 aaKnown RBP13.2□□□□□ -0.3
UPF1-211ENST00000600868 FLYWCH1Q4VC44 716 aa13.2□□□□□ -0.3
UPF1-211ENST00000600868 ZNF468Q5VIY5 522 aaPredicted RBP13.2□□□□□ -0.3
UPF1-211ENST00000600868 IGFL2Q6UWQ7 119 aa13.2□□□□□ -0.3
UPF1-211ENST00000600868 GALNT10Q86SR1 603 aa13.2□□□□□ -0.3
UPF1-211ENST00000600868 HPS6Q86YV9 775 aa13.2□□□□□ -0.3
UPF1-211ENST00000600868 FAM156AQ8NDB6 213 aa13.2□□□□□ -0.3
UPF1-211ENST00000600868 OIT3Q8WWZ8 545 aa13.2□□□□□ -0.3
UPF1-211ENST00000600868 HGDQ93099 445 aa13.2□□□□□ -0.3
UPF1-211ENST00000600868 SGCZQ96LD1 299 aa13.2□□□□□ -0.3
UPF1-211ENST00000600868 SMAD5Q99717 465 aaKnown RBP13.2□□□□□ -0.3
UPF1-211ENST00000600868 ZBTB20Q9HC78 741 aaPredicted RBP13.2□□□□□ -0.3
UPF1-211ENST00000600868 HPF1Q9NWY4 346 aa13.2□□□□□ -0.3
UPF1-211ENST00000600868 MKLN1Q9UL63 735 aa13.2□□□□□ -0.3
UPF1-211ENST00000600868 ZMIZ1Q9ULJ6 1067 aa13.2□□□□□ -0.3
UPF1-211ENST00000600868 PTPRQQ9UMZ3 2332 aa13.2□□□□□ -0.3
UPF1-211ENST00000600868 EXPH5Q8NEV8 1989 aa13.2□□□□□ -0.3
UPF1-211ENST00000600868 CXCR6O00574 342 aa13.19□□□□□ -0.3
UPF1-211ENST00000600868 TP53I11O14683 189 aa13.19□□□□□ -0.3
UPF1-211ENST00000600868 GSTA4O15217 222 aa13.19□□□□□ -0.3
UPF1-211ENST00000600868 GCM2O75603 506 aaPredicted RBP13.19□□□□□ -0.3
UPF1-211ENST00000600868 PDE9AO76083 593 aa13.19□□□□□ -0.3
UPF1-211ENST00000600868 UTS2O95399 124 aa13.19□□□□□ -0.3
UPF1-211ENST00000600868 NGFRP08138 427 aa13.19□□□□□ -0.3
UPF1-211ENST00000600868 TBXA2RP21731 343 aa13.19□□□□□ -0.3
UPF1-211ENST00000600868 RPS4Y1P22090 263 aaKnown RBP13.19□□□□□ -0.3
UPF1-211ENST00000600868 MSX2P35548 267 aaPredicted RBP13.19□□□□□ -0.3
UPF1-211ENST00000600868 CASRP41180 1078 aa13.19□□□□□ -0.3
UPF1-211ENST00000600868 CYB561P49447 251 aa13.19□□□□□ -0.3
UPF1-211ENST00000600868 ATP12AP54707 1039 aa13.19□□□□□ -0.3
UPF1-211ENST00000600868 FBXW4P57775 412 aa13.19□□□□□ -0.3
UPF1-211ENST00000600868 TRAP1Q12931 704 aaKnown RBP13.19□□□□□ -0.3
UPF1-211ENST00000600868 TUBA3CQ13748 450 aa13.19□□□□□ -0.3
UPF1-211ENST00000600868 GPR68Q15743 365 aa13.19□□□□□ -0.3
UPF1-211ENST00000600868 ZNF141Q15928 474 aa13.19□□□□□ -0.3
UPF1-211ENST00000600868 RPS26P11Q5JNZ5 115 aaPredicted RBP13.19□□□□□ -0.3
UPF1-211ENST00000600868 TUBA3EQ6PEY2 450 aa13.19□□□□□ -0.3
UPF1-211ENST00000600868 IL20RBQ6UXL0 311 aa13.19□□□□□ -0.3
UPF1-211ENST00000600868 LINC00696Q6ZRV3 163 aa13.19□□□□□ -0.3
UPF1-211ENST00000600868 OLIG3Q7RTU3 272 aa13.19□□□□□ -0.3
UPF1-211ENST00000600868 PATL1Q86TB9 770 aaKnown RBP13.19□□□□□ -0.3
UPF1-211ENST00000600868 KRT73Q86Y46 540 aa13.19□□□□□ -0.3
UPF1-211ENST00000600868 GOLM1Q8NBJ4 401 aa13.19□□□□□ -0.3
UPF1-211ENST00000600868 RNF138Q8WVD3 245 aa13.19□□□□□ -0.3
UPF1-211ENST00000600868 HAS2Q92819 552 aa13.19□□□□□ -0.3
UPF1-211ENST00000600868 ZG16BQ96DA0 208 aa13.19□□□□□ -0.3
UPF1-211ENST00000600868 TMCO6Q96DC7 493 aa13.19□□□□□ -0.3
UPF1-211ENST00000600868 ZNF607Q96SK3 696 aa13.19□□□□□ -0.3
UPF1-211ENST00000600868 SECISBP2Q96T21 854 aaKnown RBP13.19□□□□□ -0.3
UPF1-211ENST00000600868 UTP23Q9BRU9 249 aaKnown RBP13.19□□□□□ -0.3
UPF1-211ENST00000600868 PRORYQ9H606 182 aa13.19□□□□□ -0.3
UPF1-211ENST00000600868 SH2D2AQ9NP31 389 aa13.19□□□□□ -0.3
UPF1-211ENST00000600868 UBQLN4Q9NRR5 601 aa13.19□□□□□ -0.3
UPF1-211ENST00000600868 EGFL7Q9UHF1 273 aa13.19□□□□□ -0.3
UPF1-211ENST00000600868 MAGEL2Q9UJ55 1249 aa13.19□□□□□ -0.3
UPF1-211ENST00000600868 PCDHGB7Q9Y5F8 929 aa13.19□□□□□ -0.3
UPF1-211ENST00000600868 SNX13Q9Y5W8 968 aa13.19□□□□□ -0.3
UPF1-211ENST00000600868 GPC6Q9Y625 555 aaPredicted RBP13.19□□□□□ -0.3
UPF1-211ENST00000600868 AGAP5A6NIR3 686 aa13.18□□□□□ -0.3
UPF1-211ENST00000600868 ICOSLGO75144 302 aa13.18□□□□□ -0.3
UPF1-211ENST00000600868 GMNNO75496 209 aa13.18□□□□□ -0.3
UPF1-211ENST00000600868 SERPINB7O75635 380 aa13.18□□□□□ -0.3
UPF1-211ENST00000600868 UGT2B17O75795 530 aa13.18□□□□□ -0.3
UPF1-211ENST00000600868 SORBS2O94875 1100 aaKnown RBP13.18□□□□□ -0.3
UPF1-211ENST00000600868 WDPCPO95876 746 aa13.18□□□□□ -0.3
UPF1-211ENST00000600868 AQP1P29972 269 aa13.18□□□□□ -0.3
UPF1-211ENST00000600868 KDELR2P33947 212 aa13.18□□□□□ -0.3
UPF1-211ENST00000600868 DCTP40126 519 aa13.18□□□□□ -0.3
UPF1-211ENST00000600868 CD96P40200 585 aa13.18□□□□□ -0.3
UPF1-211ENST00000600868 RPP38P78345 283 aaKnown RBP13.18□□□□□ -0.3
UPF1-211ENST00000600868 GRAMD1BQ3KR37 738 aa13.18□□□□□ -0.3
UPF1-211ENST00000600868 GLYATQ6IB77 296 aa13.18□□□□□ -0.3
UPF1-211ENST00000600868 DESI1Q6ICB0 168 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms