RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 THBS1P07996 1170 aa14.27□□□□□ -0.13
UPF1-206ENST00000598471 PABPC4LP0CB38 370 aaKnown RBP14.27□□□□□ -0.13
UPF1-206ENST00000598471 IL7RP16871 459 aa14.27□□□□□ -0.13
UPF1-206ENST00000598471 TMED10P49755 219 aaKnown RBP14.27□□□□□ -0.13
UPF1-206ENST00000598471 CRYBA2P53672 197 aa14.27□□□□□ -0.13
UPF1-206ENST00000598471 FOXK2Q01167 660 aa14.27□□□□□ -0.13
UPF1-206ENST00000598471 TGIF1Q15583 401 aa14.27□□□□□ -0.13
UPF1-206ENST00000598471 LIN52Q52LA3 116 aa14.27□□□□□ -0.13
UPF1-206ENST00000598471 EIPR1Q53HC9 387 aa14.27□□□□□ -0.13
UPF1-206ENST00000598471 ZNF311Q5JNZ3 666 aa14.27□□□□□ -0.13
UPF1-206ENST00000598471 AP1ARQ63HQ0 302 aa14.27□□□□□ -0.13
UPF1-206ENST00000598471 OLIG3Q7RTU3 272 aa14.27□□□□□ -0.13
UPF1-206ENST00000598471 FAM86B1Q8N7N1 296 aa14.27□□□□□ -0.13
UPF1-206ENST00000598471 SMYD1Q8NB12 490 aa14.27□□□□□ -0.13
UPF1-206ENST00000598471 PAPD5Q8NDF8 572 aaKnown RBP14.27□□□□□ -0.13
UPF1-206ENST00000598471 OR52P1PQ8NH57 321 aa14.27□□□□□ -0.13
UPF1-206ENST00000598471 GEMIN6Q8WXD5 167 aaKnown RBP14.27□□□□□ -0.13
UPF1-206ENST00000598471 TMBIM1Q969X1 311 aa14.27□□□□□ -0.13
UPF1-206ENST00000598471 PINK1Q9BXM7 581 aa14.27□□□□□ -0.13
UPF1-206ENST00000598471 KLHL28Q9NXS3 571 aa14.27□□□□□ -0.13
UPF1-206ENST00000598471 CCDC88CQ9P219 2028 aa14.27□□□□□ -0.13
UPF1-206ENST00000598471 AGAP5A6NIR3 686 aa14.26□□□□□ -0.13
UPF1-206ENST00000598471 PRKNO60260 465 aaPredicted RBP14.26□□□□□ -0.13
UPF1-206ENST00000598471 ABCB7O75027 752 aa14.26□□□□□ -0.13
UPF1-206ENST00000598471 ZIC2O95409 532 aaPredicted RBP14.26□□□□□ -0.13
UPF1-206ENST00000598471 SERPINA7P05543 415 aa14.26□□□□□ -0.13
UPF1-206ENST00000598471 CD247P20963 164 aa14.26□□□□□ -0.13
UPF1-206ENST00000598471 PRKAR1BP31321 381 aa14.26□□□□□ -0.13
UPF1-206ENST00000598471 DCTP40126 519 aa14.26□□□□□ -0.13
UPF1-206ENST00000598471 KCNJ5P48544 419 aa14.26□□□□□ -0.13
UPF1-206ENST00000598471 ATP12AP54707 1039 aa14.26□□□□□ -0.13
UPF1-206ENST00000598471 ATP1A4Q13733 1029 aa14.26□□□□□ -0.13
UPF1-206ENST00000598471 EFR3AQ14156 821 aa14.26□□□□□ -0.13
UPF1-206ENST00000598471 ZSWIM7Q19AV6 140 aa14.26□□□□□ -0.13
UPF1-206ENST00000598471 DHRS4L2Q6PKH6 230 aa14.26□□□□□ -0.13
UPF1-206ENST00000598471 VTCN1Q7Z7D3 282 aa14.26□□□□□ -0.13
UPF1-206ENST00000598471 KBTBD2Q8IY47 623 aa14.26□□□□□ -0.13
UPF1-206ENST00000598471 SLC5A8Q8N695 610 aa14.26□□□□□ -0.13
UPF1-206ENST00000598471 SLC15A4Q8N697 577 aa14.26□□□□□ -0.13
UPF1-206ENST00000598471 ZNF527Q8NB42 609 aa14.26□□□□□ -0.13
UPF1-206ENST00000598471 ZSCAN1Q8NBB4 408 aa14.26□□□□□ -0.13
UPF1-206ENST00000598471 ADAMTS17Q8TE56 1095 aa14.26□□□□□ -0.13
UPF1-206ENST00000598471 THAP3Q8WTV1 239 aaPredicted RBP14.26□□□□□ -0.13
UPF1-206ENST00000598471 DIO2Q92813 273 aa14.26□□□□□ -0.13
UPF1-206ENST00000598471 SLCO4A1Q96BD0 722 aa14.26□□□□□ -0.13
UPF1-206ENST00000598471 OMA1Q96E52 524 aa14.26□□□□□ -0.13
UPF1-206ENST00000598471 ZNF354BQ96LW1 612 aa14.26□□□□□ -0.13
UPF1-206ENST00000598471 FER1L6-AS2Q96M78 137 aa14.26□□□□□ -0.13
UPF1-206ENST00000598471 CHID1Q9BWS9 393 aa14.26□□□□□ -0.13
UPF1-206ENST00000598471 STX18Q9P2W9 335 aaKnown RBP14.26□□□□□ -0.13
UPF1-206ENST00000598471 MYOTQ9UBF9 498 aa14.26□□□□□ -0.13
UPF1-206ENST00000598471 ZNF443Q9Y2A4 671 aaPredicted RBP14.26□□□□□ -0.13
UPF1-206ENST00000598471 SLC9A8Q9Y2E8 581 aa14.26□□□□□ -0.13
UPF1-206ENST00000598471 CDC14CA4D256 554 aa14.25□□□□□ -0.13
UPF1-206ENST00000598471 H3BNX3 289 aa14.25□□□□□ -0.13
UPF1-206ENST00000598471 WWP2O00308 870 aa14.25□□□□□ -0.13
UPF1-206ENST00000598471 SYT5O00445 386 aa14.25□□□□□ -0.13
UPF1-206ENST00000598471 TPST1O60507 370 aa14.25□□□□□ -0.13
UPF1-206ENST00000598471 IGKV1D-16P01601 117 aa14.25□□□□□ -0.13
UPF1-206ENST00000598471 FABP3P05413 133 aa14.25□□□□□ -0.13
UPF1-206ENST00000598471 FESP07332 822 aa14.25□□□□□ -0.13
UPF1-206ENST00000598471 ANPEPP15144 967 aa14.25□□□□□ -0.13
UPF1-206ENST00000598471 HPGDP15428 266 aa14.25□□□□□ -0.13
UPF1-206ENST00000598471 NAGAP17050 411 aa14.25□□□□□ -0.13
UPF1-206ENST00000598471 ITGA2P17301 1181 aa14.25□□□□□ -0.13
UPF1-206ENST00000598471 RPS4Y1P22090 263 aaKnown RBP14.25□□□□□ -0.13
UPF1-206ENST00000598471 FASP25445 335 aa14.25□□□□□ -0.13
UPF1-206ENST00000598471 ABCD3P28288 659 aa14.25□□□□□ -0.13
UPF1-206ENST00000598471 PNLIPRP2P54317 469 aa14.25□□□□□ -0.13
UPF1-206ENST00000598471 KCNC4Q03721 635 aa14.25□□□□□ -0.13
UPF1-206ENST00000598471 FBXW10Q5XX13 1052 aa14.25□□□□□ -0.13
UPF1-206ENST00000598471 JMJD6Q6NYC1 403 aaPredicted RBP14.25□□□□□ -0.13
UPF1-206ENST00000598471 VASH2Q86V25 355 aa14.25□□□□□ -0.13
UPF1-206ENST00000598471 VRK2Q86Y07 508 aa14.25□□□□□ -0.13
UPF1-206ENST00000598471 ZDHHC21Q8IVQ6 265 aa14.25□□□□□ -0.13
UPF1-206ENST00000598471 PRR22Q8IZ63 422 aa14.25□□□□□ -0.13
UPF1-206ENST00000598471 ZNF614Q8N883 585 aa14.25□□□□□ -0.13
UPF1-206ENST00000598471 OR10Q1Q8NGQ4 319 aa14.25□□□□□ -0.13
UPF1-206ENST00000598471 GATA6Q92908 595 aa14.25□□□□□ -0.13
UPF1-206ENST00000598471 FGF11Q92914 225 aa14.25□□□□□ -0.13
UPF1-206ENST00000598471 EFHD2Q96C19 240 aaPredicted RBP14.25□□□□□ -0.13
UPF1-206ENST00000598471 QRSL1Q9H0R6 528 aaKnown RBP14.25□□□□□ -0.13
UPF1-206ENST00000598471 EVA1AQ9H8M9 152 aa14.25□□□□□ -0.13
UPF1-206ENST00000598471 ST6GALNAC1Q9NSC7 600 aaPredicted RBP14.25□□□□□ -0.13
UPF1-206ENST00000598471 FBXO34Q9NWN3 711 aa14.25□□□□□ -0.13
UPF1-206ENST00000598471 C6orf203Q9P0P8 240 aaPredicted RBP14.25□□□□□ -0.13
UPF1-206ENST00000598471 NPFFR2Q9Y5X5 522 aa14.25□□□□□ -0.13
UPF1-206ENST00000598471 AHCTF1Q8WYP5 2266 aa14.25□□□□□ -0.13
UPF1-206ENST00000598471 NPIPA5A0A0B4J1W7 369 aa14.24□□□□□ -0.13
UPF1-206ENST00000598471 OR6C70A6NIJ9 312 aa14.24□□□□□ -0.13
UPF1-206ENST00000598471 C1QTNF9BB2RNN3 333 aa14.24□□□□□ -0.13
UPF1-206ENST00000598471 NPIPA7E9PJI5 369 aa14.24□□□□□ -0.13
UPF1-206ENST00000598471 SCDO00767 359 aa14.24□□□□□ -0.13
UPF1-206ENST00000598471 TIPRLO75663 272 aa14.24□□□□□ -0.13
UPF1-206ENST00000598471 PPM1BO75688 479 aa14.24□□□□□ -0.13
UPF1-206ENST00000598471 UGT2B17O75795 530 aa14.24□□□□□ -0.13
UPF1-206ENST00000598471 UTS2O95399 124 aa14.24□□□□□ -0.13
UPF1-206ENST00000598471 IFNW1P05000 195 aa14.24□□□□□ -0.13
UPF1-206ENST00000598471 C1QTNF9P0C862 333 aa14.24□□□□□ -0.13
UPF1-206ENST00000598471 NPIPA8P0DM63 369 aa14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms