RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 RD3Q7Z3Z2 195 aa14.31□□□□□ -0.12
UPF1-204ENST00000596842 SYT9Q86SS6 491 aa14.31□□□□□ -0.12
UPF1-204ENST00000596842 LRRTM4Q86VH4 590 aa14.31□□□□□ -0.12
UPF1-204ENST00000596842 CLDN22Q8N7P3 220 aa14.31□□□□□ -0.12
UPF1-204ENST00000596842 BEST4Q8NFU0 473 aa14.31□□□□□ -0.12
UPF1-204ENST00000596842 PIGXQ8TBF5 258 aa14.31□□□□□ -0.12
UPF1-204ENST00000596842 FZD3Q9NPG1 666 aa14.31□□□□□ -0.12
UPF1-204ENST00000596842 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP14.31□□□□□ -0.12
UPF1-204ENST00000596842 PLEKHM1Q9Y4G2 1056 aa14.31□□□□□ -0.12
UPF1-204ENST00000596842 NPIPA5A0A0B4J1W7 369 aa14.31□□□□□ -0.12
UPF1-204ENST00000596842 A0A1W2PRQ8 180 aa14.31□□□□□ -0.12
UPF1-204ENST00000596842 NPIPA7E9PJI5 369 aa14.31□□□□□ -0.12
UPF1-204ENST00000596842 ERVH48-1M5A8F1 160 aa14.31□□□□□ -0.12
UPF1-204ENST00000596842 UBXN7O94888 489 aa14.31□□□□□ -0.12
UPF1-204ENST00000596842 NPIPA8P0DM63 369 aa14.31□□□□□ -0.12
UPF1-204ENST00000596842 ITGB7P26010 798 aa14.31□□□□□ -0.12
UPF1-204ENST00000596842 TALDO1P37837 337 aa14.31□□□□□ -0.12
UPF1-204ENST00000596842 KHKP50053 298 aa14.31□□□□□ -0.12
UPF1-204ENST00000596842 LRRC56Q8IYG6 542 aaPredicted RBP14.31□□□□□ -0.12
UPF1-204ENST00000596842 OR2L2Q8NH16 312 aa14.31□□□□□ -0.12
UPF1-204ENST00000596842 TMEM255BQ8WV15 326 aa14.31□□□□□ -0.12
UPF1-204ENST00000596842 OR8D1Q8WZ84 308 aa14.31□□□□□ -0.12
UPF1-204ENST00000596842 TEX12Q9BXU0 123 aa14.31□□□□□ -0.12
UPF1-204ENST00000596842 C6orf106Q9H6K1 298 aaPredicted RBP14.31□□□□□ -0.12
UPF1-204ENST00000596842 FANCFQ9NPI8 374 aa14.31□□□□□ -0.12
UPF1-204ENST00000596842 LHX9Q9NQ69 397 aa14.31□□□□□ -0.12
UPF1-204ENST00000596842 ALPPP05187 535 aa14.31□□□□□ -0.12
UPF1-204ENST00000596842 GYPBP06028 91 aa14.31□□□□□ -0.12
UPF1-204ENST00000596842 TRHRP34981 398 aaPredicted RBP14.31□□□□□ -0.12
UPF1-204ENST00000596842 RPS5P46782 204 aaKnown RBP14.31□□□□□ -0.12
UPF1-204ENST00000596842 GCGRP47871 477 aa14.31□□□□□ -0.12
UPF1-204ENST00000596842 PPP3R1P63098 170 aa14.31□□□□□ -0.12
UPF1-204ENST00000596842 GNA13Q14344 377 aa14.31□□□□□ -0.12
UPF1-204ENST00000596842 KLHL36Q8N4N3 616 aa14.31□□□□□ -0.12
UPF1-204ENST00000596842 CYB561A3Q8NBI2 242 aa14.31□□□□□ -0.12
UPF1-204ENST00000596842 PRRC1Q96M27 445 aa14.31□□□□□ -0.12
UPF1-204ENST00000596842 MCHR1Q99705 422 aa14.31□□□□□ -0.12
UPF1-204ENST00000596842 SPATA5L1Q9BVQ7 753 aa14.31□□□□□ -0.12
UPF1-204ENST00000596842 MRPS23Q9Y3D9 190 aaKnown RBP14.31□□□□□ -0.12
UPF1-204ENST00000596842 GNB5O14775 395 aa14.3□□□□□ -0.12
UPF1-204ENST00000596842 HLA-DPB1P04440 258 aa14.3□□□□□ -0.12
UPF1-204ENST00000596842 GKN3PP0CG01 181 aa14.3□□□□□ -0.12
UPF1-204ENST00000596842 MAT2AP31153 395 aaKnown RBP14.3□□□□□ -0.12
UPF1-204ENST00000596842 MAPK9P45984 424 aa14.3□□□□□ -0.12
UPF1-204ENST00000596842 TAS2R38P59533 333 aa14.3□□□□□ -0.12
UPF1-204ENST00000596842 RAB40BQ12829 278 aa14.3□□□□□ -0.12
UPF1-204ENST00000596842 TOR1AIP1Q5JTV8 583 aa14.3□□□□□ -0.12
UPF1-204ENST00000596842 BHLHB9Q6PI77 547 aa14.3□□□□□ -0.12
UPF1-204ENST00000596842 SIMC1Q8NDZ2 872 aa14.3□□□□□ -0.12
UPF1-204ENST00000596842 ZCCHC10Q8TBK6 192 aa14.3□□□□□ -0.12
UPF1-204ENST00000596842 ADAMTS15Q8TE58 950 aa14.3□□□□□ -0.12
UPF1-204ENST00000596842 FAIM2Q9BWQ8 316 aa14.3□□□□□ -0.12
UPF1-204ENST00000596842 ABCG5Q9H222 651 aa14.3□□□□□ -0.12
UPF1-204ENST00000596842 RBFOX1Q9NWB1 397 aaKnown RBP14.3□□□□□ -0.12
UPF1-204ENST00000596842 LOC105369274A0A096LPK9 316 aa14.3□□□□□ -0.12
UPF1-204ENST00000596842 MAGEB4O15481 346 aaPredicted RBP14.3□□□□□ -0.12
UPF1-204ENST00000596842 SCO2O43819 266 aa14.3□□□□□ -0.12
UPF1-204ENST00000596842 AKAP8O43823 692 aaKnown RBP14.3□□□□□ -0.12
UPF1-204ENST00000596842 ORC5O43913 435 aa14.3□□□□□ -0.12
UPF1-204ENST00000596842 LILRB5O75023 590 aa14.3□□□□□ -0.12
UPF1-204ENST00000596842 TOXO94900 526 aa14.3□□□□□ -0.12
UPF1-204ENST00000596842 EPPINO95925 133 aa14.3□□□□□ -0.12
UPF1-204ENST00000596842 PROS1P07225 676 aa14.3□□□□□ -0.12
UPF1-204ENST00000596842 ACADMP11310 421 aa14.3□□□□□ -0.12
UPF1-204ENST00000596842 ADH5P11766 374 aa14.3□□□□□ -0.12
UPF1-204ENST00000596842 ALAS2P22557 587 aa14.3□□□□□ -0.12
UPF1-204ENST00000596842 ACADLP28330 430 aa14.3□□□□□ -0.12
UPF1-204ENST00000596842 OR10A3P58181 314 aa14.3□□□□□ -0.12
UPF1-204ENST00000596842 COX10Q12887 443 aa14.3□□□□□ -0.12
UPF1-204ENST00000596842 TMEM201Q5SNT2 666 aa14.3□□□□□ -0.12
UPF1-204ENST00000596842 LCTLQ6UWM7 567 aa14.3□□□□□ -0.12
UPF1-204ENST00000596842 RASGRP3Q8IV61 690 aa14.3□□□□□ -0.12
UPF1-204ENST00000596842 RDH10Q8IZV5 341 aa14.3□□□□□ -0.12
UPF1-204ENST00000596842 OR4N4Q8N0Y3 316 aa14.3□□□□□ -0.12
UPF1-204ENST00000596842 C12orf76Q8N812 135 aaPredicted RBP14.3□□□□□ -0.12
UPF1-204ENST00000596842 SETD7Q8WTS6 366 aaKnown RBP14.3□□□□□ -0.12
UPF1-204ENST00000596842 PIGKQ92643 395 aa14.3□□□□□ -0.12
UPF1-204ENST00000596842 OR52A5Q9H2C5 316 aa14.3□□□□□ -0.12
UPF1-204ENST00000596842 CACYBPQ9HB71 228 aaKnown RBP14.3□□□□□ -0.12
UPF1-204ENST00000596842 ZSCAN32Q9NX65 697 aa14.3□□□□□ -0.12
UPF1-204ENST00000596842 KLHL28Q9NXS3 571 aa14.3□□□□□ -0.12
UPF1-204ENST00000596842 MRPL15Q9P015 296 aaKnown RBP14.3□□□□□ -0.12
UPF1-204ENST00000596842 ICKQ9UPZ9 632 aa14.3□□□□□ -0.12
UPF1-204ENST00000596842 EFEMP2O95967 443 aa14.3□□□□□ -0.12
UPF1-204ENST00000596842 ARSBP15848 533 aa14.3□□□□□ -0.12
UPF1-204ENST00000596842 ELK1P19419 428 aa14.3□□□□□ -0.12
UPF1-204ENST00000596842 SHC1P29353 583 aa14.3□□□□□ -0.12
UPF1-204ENST00000596842 GABRA5P31644 462 aa14.3□□□□□ -0.12
UPF1-204ENST00000596842 CNKSR3Q6P9H4 555 aa14.3□□□□□ -0.12
UPF1-204ENST00000596842 RPTNQ6XPR3 784 aa14.3□□□□□ -0.12
UPF1-204ENST00000596842 KLHDC8AQ8IYD2 350 aa14.3□□□□□ -0.12
UPF1-204ENST00000596842 WDFY2Q96P53 400 aa14.3□□□□□ -0.12
UPF1-204ENST00000596842 DPH1Q9BZG8 443 aa14.3□□□□□ -0.12
UPF1-204ENST00000596842 CDCP1Q9H5V8 836 aa14.3□□□□□ -0.12
UPF1-204ENST00000596842 TESQ9UGI8 421 aaKnown RBP14.3□□□□□ -0.12
UPF1-204ENST00000596842 ARRDC5A6NEK1 342 aa14.29□□□□□ -0.12
UPF1-204ENST00000596842 IFNA16P05015 189 aa14.29□□□□□ -0.12
UPF1-204ENST00000596842 ZNF806P0C7X5 589 aa14.29□□□□□ -0.12
UPF1-204ENST00000596842 IFNGR2P38484 337 aa14.29□□□□□ -0.12
UPF1-204ENST00000596842 PCBP4P57723 403 aaKnown RBP14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms