RNA–Protein interactions for RNA: ENST00000587339.2

TRIM47-204, Transcript of tripartite motif containing 47, humanhuman

TSL 1 (best)

Gene TRIM47, Length 1,907 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM47-204ENST00000587339 AP1ARQ63HQ0 302 aa18.41■□□□□ 0.54
TRIM47-204ENST00000587339 NPSR1Q6W5P4 371 aa18.41■□□□□ 0.54
TRIM47-204ENST00000587339 TSPYL5Q86VY4 417 aaPredicted RBP18.41■□□□□ 0.54
TRIM47-204ENST00000587339 BPHLQ86WA6 291 aaPredicted RBP18.41■□□□□ 0.54
TRIM47-204ENST00000587339 AQP11Q8NBQ7 271 aa18.41■□□□□ 0.54
TRIM47-204ENST00000587339 STT3BQ8TCJ2 826 aa18.41■□□□□ 0.54
TRIM47-204ENST00000587339 SLC7A13Q8TCU3 470 aa18.41■□□□□ 0.54
TRIM47-204ENST00000587339 ITPAQ9BY32 194 aa18.41■□□□□ 0.54
TRIM47-204ENST00000587339 OR8D2Q9GZM6 311 aa18.41■□□□□ 0.54
TRIM47-204ENST00000587339 CTPS2Q9NRF8 586 aa18.41■□□□□ 0.54
TRIM47-204ENST00000587339 KCNE5Q9UJ90 142 aa18.41■□□□□ 0.54
TRIM47-204ENST00000587339 A6NHS1 94 aa18.4■□□□□ 0.54
TRIM47-204ENST00000587339 EFCAB7A8K855 629 aa18.4■□□□□ 0.54
TRIM47-204ENST00000587339 FAAHO00519 579 aa18.4■□□□□ 0.54
TRIM47-204ENST00000587339 SMNDC1O75940 238 aaKnown RBP eCLIP18.4■□□□□ 0.54
TRIM47-204ENST00000587339 OXSR1O95747 527 aaPredicted RBP18.4■□□□□ 0.54
TRIM47-204ENST00000587339 CLPSP04118 112 aa18.4■□□□□ 0.54
TRIM47-204ENST00000587339 CCNYL3P0C7X3 344 aa18.4■□□□□ 0.54
TRIM47-204ENST00000587339 POU2F1P14859 743 aa18.4■□□□□ 0.54
TRIM47-204ENST00000587339 RPS6KA3P51812 740 aa18.4■□□□□ 0.54
TRIM47-204ENST00000587339 SLC37A1P57057 533 aa18.4■□□□□ 0.54
TRIM47-204ENST00000587339 TAS2R41P59536 307 aa18.4■□□□□ 0.54
TRIM47-204ENST00000587339 DCDP81605 110 aaKnown RBP18.4■□□□□ 0.54
TRIM47-204ENST00000587339 IL11RAQ14626 422 aa18.4■□□□□ 0.54
TRIM47-204ENST00000587339 NNATQ16517 81 aa18.4■□□□□ 0.54
TRIM47-204ENST00000587339 ZNF770Q6IQ21 691 aaPredicted RBP18.4■□□□□ 0.54
TRIM47-204ENST00000587339 ZAR1Q86SH2 424 aa18.4■□□□□ 0.54
TRIM47-204ENST00000587339 AGBL5Q8NDL9 886 aa18.4■□□□□ 0.54
TRIM47-204ENST00000587339 TSPAN14Q8NG11 270 aa18.4■□□□□ 0.54
TRIM47-204ENST00000587339 NR4A3Q92570 626 aa18.4■□□□□ 0.54
TRIM47-204ENST00000587339 GABARAPL3Q9BY60 117 aa18.4■□□□□ 0.54
TRIM47-204ENST00000587339 OR10H1Q9Y4A9 318 aa18.4■□□□□ 0.54
TRIM47-204ENST00000587339 IGLV3-12A0A075B6K2 115 aa18.39■□□□□ 0.53
TRIM47-204ENST00000587339 AP3D1O14617 1153 aa18.39■□□□□ 0.53
TRIM47-204ENST00000587339 CLPTM1O96005 669 aa18.39■□□□□ 0.53
TRIM47-204ENST00000587339 GASTP01350 101 aa18.39■□□□□ 0.53
TRIM47-204ENST00000587339 GUSBP08236 651 aa18.39■□□□□ 0.53
TRIM47-204ENST00000587339 CBLP22681 906 aa18.39■□□□□ 0.53
TRIM47-204ENST00000587339 EPHA2P29317 976 aa18.39■□□□□ 0.53
TRIM47-204ENST00000587339 IFNA8P32881 189 aa18.39■□□□□ 0.53
TRIM47-204ENST00000587339 CLK3P49761 638 aaKnown RBP18.39■□□□□ 0.53
TRIM47-204ENST00000587339 RAPSNQ13702 412 aa18.39■□□□□ 0.53
TRIM47-204ENST00000587339 SEC23BQ15437 767 aa18.39■□□□□ 0.53
TRIM47-204ENST00000587339 KCTD21Q4G0X4 260 aa18.39■□□□□ 0.53
TRIM47-204ENST00000587339 SHISA6Q6ZSJ9 500 aa18.39■□□□□ 0.53
TRIM47-204ENST00000587339 SETD9Q8NE22 299 aa18.39■□□□□ 0.53
TRIM47-204ENST00000587339 SLC2A12Q8TD20 617 aa18.39■□□□□ 0.53
TRIM47-204ENST00000587339 DAZLQ92904 295 aaKnown RBP18.39■□□□□ 0.53
TRIM47-204ENST00000587339 GTPBP3Q969Y2 492 aaKnown RBP18.39■□□□□ 0.53
TRIM47-204ENST00000587339 G6PC3Q9BUM1 346 aa18.39■□□□□ 0.53
TRIM47-204ENST00000587339 PRR14Q9BWN1 585 aa18.39■□□□□ 0.53
TRIM47-204ENST00000587339 MRPS26Q9BYN8 205 aaKnown RBP18.39■□□□□ 0.53
TRIM47-204ENST00000587339 ARMC7Q9H6L4 198 aa18.39■□□□□ 0.53
TRIM47-204ENST00000587339 GMPPBQ9Y5P6 360 aa18.39■□□□□ 0.53
TRIM47-204ENST00000587339 POLR1CO15160 346 aaPredicted RBP18.39■□□□□ 0.53
TRIM47-204ENST00000587339 OR10H3O60404 316 aa18.39■□□□□ 0.53
TRIM47-204ENST00000587339 IGKV1D-16P01601 117 aa18.39■□□□□ 0.53
TRIM47-204ENST00000587339 ZGLP1P0C6A0 271 aa18.39■□□□□ 0.53
TRIM47-204ENST00000587339 FGF5P12034 268 aa18.39■□□□□ 0.53
TRIM47-204ENST00000587339 ATP6V1B1P15313 513 aa18.39■□□□□ 0.53
TRIM47-204ENST00000587339 ELK4P28324 431 aa18.39■□□□□ 0.53
TRIM47-204ENST00000587339 ISL1P61371 349 aa18.39■□□□□ 0.53
TRIM47-204ENST00000587339 MRPL2Q5T653 305 aaKnown RBP18.39■□□□□ 0.53
TRIM47-204ENST00000587339 RNF220Q5VTB9 566 aa18.39■□□□□ 0.53
TRIM47-204ENST00000587339 LAIR1Q6GTX8 287 aa18.39■□□□□ 0.53
TRIM47-204ENST00000587339 ZNF321PQ8N8H1 164 aa18.39■□□□□ 0.53
TRIM47-204ENST00000587339 PLPP5Q8NEB5 264 aa18.39■□□□□ 0.53
TRIM47-204ENST00000587339 SLC46A1Q96NT5 459 aa18.39■□□□□ 0.53
TRIM47-204ENST00000587339 CTRCQ99895 268 aa18.39■□□□□ 0.53
TRIM47-204ENST00000587339 FUZQ9BT04 418 aa18.39■□□□□ 0.53
TRIM47-204ENST00000587339 MAN2C1Q9NTJ4 1040 aa18.39■□□□□ 0.53
TRIM47-204ENST00000587339 NDRG4Q9ULP0 352 aaKnown RBP18.39■□□□□ 0.53
TRIM47-204ENST00000587339 CBLCQ9ULV8 474 aa18.39■□□□□ 0.53
TRIM47-204ENST00000587339 CFL2Q9Y281 166 aa18.39■□□□□ 0.53
TRIM47-204ENST00000587339 NUP210LQ5VU65 1888 aa18.38■□□□□ 0.53
TRIM47-204ENST00000587339 SH3PXD2BA1X283 911 aa18.38■□□□□ 0.53
TRIM47-204ENST00000587339 SYNDIG1LA6NDD5 238 aa18.38■□□□□ 0.53
TRIM47-204ENST00000587339 CPSF4LA6NMK7 179 aaKnown RBP18.38■□□□□ 0.53
TRIM47-204ENST00000587339 IGKV3-11P04433 115 aa18.38■□□□□ 0.53
TRIM47-204ENST00000587339 RYKP34925 604 aa18.38■□□□□ 0.53
TRIM47-204ENST00000587339 RPP38P78345 283 aaKnown RBP18.38■□□□□ 0.53
TRIM47-204ENST00000587339 HOXC5Q00444 222 aa18.38■□□□□ 0.53
TRIM47-204ENST00000587339 OR14A16Q8NHC5 309 aa18.38■□□□□ 0.53
TRIM47-204ENST00000587339 ADAMTS16Q8TE57 1224 aa18.38■□□□□ 0.53
TRIM47-204ENST00000587339 ART5Q96L15 291 aa18.38■□□□□ 0.53
TRIM47-204ENST00000587339 APOL4Q9BPW4 351 aa18.38■□□□□ 0.53
TRIM47-204ENST00000587339 YTHDF1Q9BYJ9 559 aaKnown RBP18.38■□□□□ 0.53
TRIM47-204ENST00000587339 C14orf105Q9NVL8 296 aa18.38■□□□□ 0.53
TRIM47-204ENST00000587339 FER1L5A0AVI2 2057 aa18.38■□□□□ 0.53
TRIM47-204ENST00000587339 ASCC3Q8N3C0 2202 aaKnown RBP18.38■□□□□ 0.53
TRIM47-204ENST00000587339 KMT2EQ8IZD2 1858 aa18.38■□□□□ 0.53
TRIM47-204ENST00000587339 CDHR4A6H8M9 788 aa18.37■□□□□ 0.53
TRIM47-204ENST00000587339 DDAH2O95865 285 aa18.37■□□□□ 0.53
TRIM47-204ENST00000587339 ADAP00813 363 aa18.37■□□□□ 0.53
TRIM47-204ENST00000587339 IL5RAQ01344 420 aa18.37■□□□□ 0.53
TRIM47-204ENST00000587339 CD47Q08722 323 aa18.37■□□□□ 0.53
TRIM47-204ENST00000587339 ST3GAL3Q11203 375 aa18.37■□□□□ 0.53
TRIM47-204ENST00000587339 ENTPD8Q5MY95 495 aa18.37■□□□□ 0.53
TRIM47-204ENST00000587339 PODNL1Q6PEZ8 512 aa18.37■□□□□ 0.53
TRIM47-204ENST00000587339 ZNF614Q8N883 585 aa18.37■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms