RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP2.91□□□□□ -1.94
SMCHD1-209ENST00000583441 CUTCQ9NTM9 273 aa2.91□□□□□ -1.94
SMCHD1-209ENST00000583441 RBM28Q9NW13 759 aaKnown RBP2.91□□□□□ -1.94
SMCHD1-209ENST00000583441 CYTH4Q9UIA0 394 aa2.91□□□□□ -1.94
SMCHD1-209ENST00000583441 LAMP5Q9UJQ1 280 aa2.91□□□□□ -1.94
SMCHD1-209ENST00000583441 BLOC1S6Q9UL45 172 aa2.91□□□□□ -1.94
SMCHD1-209ENST00000583441 COL5A2P05997 1499 aaPredicted RBP2.9□□□□□ -1.94
SMCHD1-209ENST00000583441 PARD3Q8TEW0 1356 aa2.9□□□□□ -1.94
SMCHD1-209ENST00000583441 PPIAL4CA0A0B4J2A2 164 aa2.9□□□□□ -1.95
SMCHD1-209ENST00000583441 PPIHO43447 177 aaKnown RBP2.9□□□□□ -1.95
SMCHD1-209ENST00000583441 GPRIN2O60269 458 aa2.9□□□□□ -1.95
SMCHD1-209ENST00000583441 PIGRP01833 764 aa2.9□□□□□ -1.95
SMCHD1-209ENST00000583441 CHRNA1P02708 482 aa2.9□□□□□ -1.95
SMCHD1-209ENST00000583441 PCCBP05166 539 aa2.9□□□□□ -1.95
SMCHD1-209ENST00000583441 ASNSP08243 561 aa2.9□□□□□ -1.95
SMCHD1-209ENST00000583441 CT45A10P0DMU9 189 aa2.9□□□□□ -1.95
SMCHD1-209ENST00000583441 PPIAL4GP0DN37 164 aa2.9□□□□□ -1.95
SMCHD1-209ENST00000583441 ANXA3P12429 323 aa2.9□□□□□ -1.95
SMCHD1-209ENST00000583441 FOLR2P14207 255 aa2.9□□□□□ -1.95
SMCHD1-209ENST00000583441 CYLC1P35663 651 aaPredicted RBP2.9□□□□□ -1.95
SMCHD1-209ENST00000583441 FNTAP49354 379 aa2.9□□□□□ -1.95
SMCHD1-209ENST00000583441 ACADVLP49748 655 aa2.9□□□□□ -1.95
SMCHD1-209ENST00000583441 ARHGDIBP52566 201 aa2.9□□□□□ -1.95
SMCHD1-209ENST00000583441 HMGCS2P54868 508 aa2.9□□□□□ -1.95
SMCHD1-209ENST00000583441 RPS6P62753 249 aaKnown RBP2.9□□□□□ -1.95
SMCHD1-209ENST00000583441 RFTN1Q14699 578 aaPredicted RBP2.9□□□□□ -1.95
SMCHD1-209ENST00000583441 CAMK4Q16566 473 aa2.9□□□□□ -1.95
SMCHD1-209ENST00000583441 TATDN3Q17R31 274 aa2.9□□□□□ -1.95
SMCHD1-209ENST00000583441 SLX4IPQ5VYV7 408 aa2.9□□□□□ -1.95
SMCHD1-209ENST00000583441 RNLSQ5VYX0 342 aa2.9□□□□□ -1.95
SMCHD1-209ENST00000583441 REG3GQ6UW15 175 aa2.9□□□□□ -1.95
SMCHD1-209ENST00000583441 IFNEQ86WN2 208 aa2.9□□□□□ -1.95
SMCHD1-209ENST00000583441 SUMF1Q8NBK3 374 aa2.9□□□□□ -1.95
SMCHD1-209ENST00000583441 OR6T1Q8NGN1 323 aa2.9□□□□□ -1.95
SMCHD1-209ENST00000583441 RAB3CQ96E17 227 aa2.9□□□□□ -1.95
SMCHD1-209ENST00000583441 SDSLQ96GA7 329 aa2.9□□□□□ -1.95
SMCHD1-209ENST00000583441 MCCC1Q96RQ3 725 aaPredicted RBP2.9□□□□□ -1.95
SMCHD1-209ENST00000583441 APOL2Q9BQE5 337 aa2.9□□□□□ -1.95
SMCHD1-209ENST00000583441 SLC25A51Q9H1U9 297 aa2.9□□□□□ -1.95
SMCHD1-209ENST00000583441 OPN3Q9H1Y3 402 aaPredicted RBP2.9□□□□□ -1.95
SMCHD1-209ENST00000583441 ELOVL2Q9NXB9 296 aa2.9□□□□□ -1.95
SMCHD1-209ENST00000583441 EHFQ9NZC4 300 aa2.9□□□□□ -1.95
SMCHD1-209ENST00000583441 RCOR3Q9P2K3 495 aaPredicted RBP2.9□□□□□ -1.95
SMCHD1-209ENST00000583441 CRLS1Q9UJA2 301 aa2.9□□□□□ -1.95
SMCHD1-209ENST00000583441 SPACA6W5XKT8 324 aa2.9□□□□□ -1.95
SMCHD1-209ENST00000583441 SF3B1O75533 1304 aaKnown RBP eCLIP2.9□□□□□ -1.95
SMCHD1-209ENST00000583441 TRAV9-2A0A087WT02 112 aa2.89□□□□□ -1.95
SMCHD1-209ENST00000583441 EFCAB7A8K855 629 aa2.89□□□□□ -1.95
SMCHD1-209ENST00000583441 A8MUI8 341 aa2.89□□□□□ -1.95
SMCHD1-209ENST00000583441 CASKO14936 926 aa2.89□□□□□ -1.95
SMCHD1-209ENST00000583441 TRIM3O75382 744 aaPredicted RBP2.89□□□□□ -1.95
SMCHD1-209ENST00000583441 STX11O75558 287 aa2.89□□□□□ -1.95
SMCHD1-209ENST00000583441 RHBDL1O75783 438 aa2.89□□□□□ -1.95
SMCHD1-209ENST00000583441 GJB5O95377 273 aa2.89□□□□□ -1.95
SMCHD1-209ENST00000583441 JCHAINP01591 159 aa2.89□□□□□ -1.95
SMCHD1-209ENST00000583441 TSPY4P0CV99 314 aa2.89□□□□□ -1.95
SMCHD1-209ENST00000583441 TSPY10P0CW01 314 aa2.89□□□□□ -1.95
SMCHD1-209ENST00000583441 HSPA5P11021 654 aaKnown RBP2.89□□□□□ -1.95
SMCHD1-209ENST00000583441 CAPN2P17655 700 aa2.89□□□□□ -1.95
SMCHD1-209ENST00000583441 SOX6P35712 828 aa2.89□□□□□ -1.95
SMCHD1-209ENST00000583441 DSCR10P59022 87 aa2.89□□□□□ -1.95
SMCHD1-209ENST00000583441 BDH1Q02338 343 aa2.89□□□□□ -1.95
SMCHD1-209ENST00000583441 CSTF1Q05048 431 aaKnown RBP2.89□□□□□ -1.95
SMCHD1-209ENST00000583441 ELP6Q0PNE2 266 aa2.89□□□□□ -1.95
SMCHD1-209ENST00000583441 LTB4RQ15722 352 aa2.89□□□□□ -1.95
SMCHD1-209ENST00000583441 CYP51A1Q16850 503 aa2.89□□□□□ -1.95
SMCHD1-209ENST00000583441 C15orf32Q32M92 178 aa2.89□□□□□ -1.95
SMCHD1-209ENST00000583441 SLC36A3Q495N2 470 aa2.89□□□□□ -1.95
SMCHD1-209ENST00000583441 METTL11BQ5VVY1 283 aa2.89□□□□□ -1.95
SMCHD1-209ENST00000583441 SPINK14Q6IE38 97 aa2.89□□□□□ -1.95
SMCHD1-209ENST00000583441 ERASQ7Z444 233 aa2.89□□□□□ -1.95
SMCHD1-209ENST00000583441 HSD11B1LQ7Z5J1 315 aa2.89□□□□□ -1.95
SMCHD1-209ENST00000583441 MARCH9Q86YJ5 346 aa2.89□□□□□ -1.95
SMCHD1-209ENST00000583441 SLC39A11Q8N1S5 342 aa2.89□□□□□ -1.95
SMCHD1-209ENST00000583441 ARL6IP6Q8N6S5 226 aa2.89□□□□□ -1.95
SMCHD1-209ENST00000583441 ZSCAN4Q8NAM6 433 aaPredicted RBP2.89□□□□□ -1.95
SMCHD1-209ENST00000583441 IL1F10Q8WWZ1 152 aa2.89□□□□□ -1.95
SMCHD1-209ENST00000583441 PIWIL1Q96J94 861 aaKnown RBP2.89□□□□□ -1.95
SMCHD1-209ENST00000583441 HCAR1Q9BXC0 346 aa2.89□□□□□ -1.95
SMCHD1-209ENST00000583441 GPN2Q9H9Y4 310 aaPredicted RBP2.89□□□□□ -1.95
SMCHD1-209ENST00000583441 TMOD2Q9NZR1 351 aa2.89□□□□□ -1.95
SMCHD1-209ENST00000583441 ARMCX1Q9P291 453 aa2.89□□□□□ -1.95
SMCHD1-209ENST00000583441 MRPS7Q9Y2R9 242 aaKnown RBP2.89□□□□□ -1.95
SMCHD1-209ENST00000583441 GMPPBQ9Y5P6 360 aa2.89□□□□□ -1.95
SMCHD1-209ENST00000583441 ZNF840PA6NDX5 716 aa2.88□□□□□ -1.95
SMCHD1-209ENST00000583441 ZSCAN5CA6NGD5 496 aaPredicted RBP2.88□□□□□ -1.95
SMCHD1-209ENST00000583441 G3V3Y1 287 aa2.88□□□□□ -1.95
SMCHD1-209ENST00000583441 SLC17A2O00624 439 aa2.88□□□□□ -1.95
SMCHD1-209ENST00000583441 SRPX2O60687 465 aaPredicted RBP2.88□□□□□ -1.95
SMCHD1-209ENST00000583441 TBX19O60806 448 aa2.88□□□□□ -1.95
SMCHD1-209ENST00000583441 EPB41P11171 864 aaKnown RBP2.88□□□□□ -1.95
SMCHD1-209ENST00000583441 PDHBP11177 359 aa2.88□□□□□ -1.95
SMCHD1-209ENST00000583441 KRT13P13646 458 aa2.88□□□□□ -1.95
SMCHD1-209ENST00000583441 OTX2P32243 289 aa2.88□□□□□ -1.95
SMCHD1-209ENST00000583441 ACVR1BP36896 505 aa2.88□□□□□ -1.95
SMCHD1-209ENST00000583441 GNPDA1P46926 289 aa2.88□□□□□ -1.95
SMCHD1-209ENST00000583441 OR1D4P47884 311 aa2.88□□□□□ -1.95
SMCHD1-209ENST00000583441 ALDH3B2P48448 385 aa2.88□□□□□ -1.95
SMCHD1-209ENST00000583441 POU3F4P49335 361 aa2.88□□□□□ -1.95
SMCHD1-209ENST00000583441 RND3P61587 244 aa2.88□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms