RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 DRD5P21918 477 aa14.14□□□□□ -0.15
VPS53-218ENST00000575207 IDH3GP51553 393 aaPredicted RBP14.14□□□□□ -0.15
VPS53-218ENST00000575207 HNRNPH2P55795 449 aaKnown RBP14.14□□□□□ -0.15
VPS53-218ENST00000575207 C11orf87Q6NUJ2 197 aa14.14□□□□□ -0.15
VPS53-218ENST00000575207 PRUNE1Q86TP1 453 aa14.14□□□□□ -0.15
VPS53-218ENST00000575207 SIGLECL1Q8N7X8 197 aa14.14□□□□□ -0.15
VPS53-218ENST00000575207 TRIM58Q8NG06 486 aa14.14□□□□□ -0.15
VPS53-218ENST00000575207 RNF217Q8TC41 542 aa14.14□□□□□ -0.15
VPS53-218ENST00000575207 RNF128Q8TEB7 428 aa14.14□□□□□ -0.15
VPS53-218ENST00000575207 C22orf15Q8WYQ4 148 aa14.14□□□□□ -0.15
VPS53-218ENST00000575207 DVL3Q92997 716 aaPredicted RBP14.14□□□□□ -0.15
VPS53-218ENST00000575207 C1GALT1C1Q96EU7 318 aa14.14□□□□□ -0.15
VPS53-218ENST00000575207 CCDC42Q96M95 316 aa14.14□□□□□ -0.15
VPS53-218ENST00000575207 TMPRSS13Q9BYE2 586 aa14.14□□□□□ -0.15
VPS53-218ENST00000575207 RAB1BQ9H0U4 201 aa14.14□□□□□ -0.15
VPS53-218ENST00000575207 PPP4R1LQ9P1A2 415 aa14.14□□□□□ -0.15
VPS53-218ENST00000575207 SLC25A15Q9Y619 301 aa14.14□□□□□ -0.15
VPS53-218ENST00000575207 G3V4G9 280 aa14.13□□□□□ -0.15
VPS53-218ENST00000575207 EEDO75530 441 aaKnown RBP14.13□□□□□ -0.15
VPS53-218ENST00000575207 WDR47O94967 919 aa14.13□□□□□ -0.15
VPS53-218ENST00000575207 PRSS23O95084 383 aa14.13□□□□□ -0.15
VPS53-218ENST00000575207 KNG1P01042 644 aa14.13□□□□□ -0.15
VPS53-218ENST00000575207 PPOXP50336 477 aa14.13□□□□□ -0.15
VPS53-218ENST00000575207 IL2P60568 153 aa14.13□□□□□ -0.15
VPS53-218ENST00000575207 DOC2BQ14184 412 aa14.13□□□□□ -0.15
VPS53-218ENST00000575207 MLC1Q15049 377 aa14.13□□□□□ -0.15
VPS53-218ENST00000575207 RNPS1Q15287 305 aaKnown RBP14.13□□□□□ -0.15
VPS53-218ENST00000575207 C6orf163Q5TEZ5 329 aa14.13□□□□□ -0.15
VPS53-218ENST00000575207 CLDND2Q8NHS1 167 aa14.13□□□□□ -0.15
VPS53-218ENST00000575207 ABHD3Q8WU67 409 aa14.13□□□□□ -0.15
VPS53-218ENST00000575207 ALG3Q92685 438 aa14.13□□□□□ -0.15
VPS53-218ENST00000575207 TMBIM1Q969X1 311 aa14.13□□□□□ -0.15
VPS53-218ENST00000575207 ADOQ96SZ5 270 aa14.13□□□□□ -0.15
VPS53-218ENST00000575207 LRRC1Q9BTT6 524 aa14.13□□□□□ -0.15
VPS53-218ENST00000575207 SORBS1Q9BX66 1292 aaKnown RBP14.13□□□□□ -0.15
VPS53-218ENST00000575207 NAT10Q9H0A0 1025 aaKnown RBP14.13□□□□□ -0.15
VPS53-218ENST00000575207 EHD1Q9H4M9 534 aa14.13□□□□□ -0.15
VPS53-218ENST00000575207 PTGES2Q9H7Z7 377 aa14.13□□□□□ -0.15
VPS53-218ENST00000575207 SLC52A3Q9NQ40 469 aa14.13□□□□□ -0.15
VPS53-218ENST00000575207 MED11Q9P086 117 aa14.13□□□□□ -0.15
VPS53-218ENST00000575207 SLC22A31A6NKX4 558 aa14.12□□□□□ -0.15
VPS53-218ENST00000575207 SMTNL1A8MU46 457 aa14.12□□□□□ -0.15
VPS53-218ENST00000575207 TSPAN2O60636 221 aa14.12□□□□□ -0.15
VPS53-218ENST00000575207 SH3BGRLO75368 114 aa14.12□□□□□ -0.15
VPS53-218ENST00000575207 REM1O75628 298 aa14.12□□□□□ -0.15
VPS53-218ENST00000575207 FSHBP01225 129 aa14.12□□□□□ -0.15
VPS53-218ENST00000575207 TFP02787 698 aa14.12□□□□□ -0.15
VPS53-218ENST00000575207 ETS1P14921 441 aa14.12□□□□□ -0.15
VPS53-218ENST00000575207 EPB42P16452 691 aa14.12□□□□□ -0.15
VPS53-218ENST00000575207 IGHV1-2P23083 117 aa14.12□□□□□ -0.15
VPS53-218ENST00000575207 PPICP45877 212 aa14.12□□□□□ -0.15
VPS53-218ENST00000575207 RASGEF1BQ0VAM2 473 aa14.12□□□□□ -0.15
VPS53-218ENST00000575207 EFR3AQ14156 821 aa14.12□□□□□ -0.15
VPS53-218ENST00000575207 RUSC1-AS1Q66K80 236 aa14.12□□□□□ -0.15
VPS53-218ENST00000575207 OR4C11Q6IEV9 310 aa14.12□□□□□ -0.15
VPS53-218ENST00000575207 BRICD5Q6PL45 260 aa14.12□□□□□ -0.15
VPS53-218ENST00000575207 ZCCHC7Q8N3Z6 543 aaKnown RBP14.12□□□□□ -0.15
VPS53-218ENST00000575207 WDR60Q8WVS4 1066 aa14.12□□□□□ -0.15
VPS53-218ENST00000575207 NEU4Q8WWR8 484 aaPredicted RBP14.12□□□□□ -0.15
VPS53-218ENST00000575207 ATG4AQ8WYN0 398 aa14.12□□□□□ -0.15
VPS53-218ENST00000575207 TMIGD2Q96BF3 282 aa14.12□□□□□ -0.15
VPS53-218ENST00000575207 TSGA10Q9BZW7 698 aa14.12□□□□□ -0.15
VPS53-218ENST00000575207 RACGAP1Q9H0H5 632 aa14.12□□□□□ -0.15
VPS53-218ENST00000575207 CORINQ9Y5Q5 1042 aa14.12□□□□□ -0.15
VPS53-218ENST00000575207 CLDN34H7C241 214 aa14.11□□□□□ -0.15
VPS53-218ENST00000575207 M0R1B8 84 aa14.11□□□□□ -0.15
VPS53-218ENST00000575207 SAP18O00422 153 aaKnown RBP14.11□□□□□ -0.15
VPS53-218ENST00000575207 PRAMEF4O60810 478 aa14.11□□□□□ -0.15
VPS53-218ENST00000575207 CLDN9O95484 217 aa14.11□□□□□ -0.15
VPS53-218ENST00000575207 GAAP10253 952 aa14.11□□□□□ -0.15
VPS53-218ENST00000575207 NR2F6P10588 404 aa14.11□□□□□ -0.15
VPS53-218ENST00000575207 ADRA2CP18825 462 aa14.11□□□□□ -0.15
VPS53-218ENST00000575207 GDF5P43026 501 aa14.11□□□□□ -0.15
VPS53-218ENST00000575207 OR3A2P47893 321 aa14.11□□□□□ -0.15
VPS53-218ENST00000575207 DHX34Q14147 1143 aaKnown RBP14.11□□□□□ -0.15
VPS53-218ENST00000575207 FAM189A2Q15884 450 aa14.11□□□□□ -0.15
VPS53-218ENST00000575207 PRAMEF9Q5VWM5 478 aa14.11□□□□□ -0.15
VPS53-218ENST00000575207 ESPNLQ6ZVH7 1005 aa14.11□□□□□ -0.15
VPS53-218ENST00000575207 WDR75Q8IWA0 830 aaKnown RBP14.11□□□□□ -0.15
VPS53-218ENST00000575207 TOR1AIP2Q8NFQ8 470 aa14.11□□□□□ -0.15
VPS53-218ENST00000575207 OR52N5Q8NH56 324 aa14.11□□□□□ -0.15
VPS53-218ENST00000575207 OR2V1Q8NHB1 315 aa14.11□□□□□ -0.15
VPS53-218ENST00000575207 ZNF473Q8WTR7 871 aaKnown RBP14.11□□□□□ -0.15
VPS53-218ENST00000575207 SLC25A28Q96A46 364 aa14.11□□□□□ -0.15
VPS53-218ENST00000575207 CHP1Q99653 195 aa14.11□□□□□ -0.15
VPS53-218ENST00000575207 CAPS2Q9BXY5 557 aa14.11□□□□□ -0.15
VPS53-218ENST00000575207 NHEJ1Q9H9Q4 299 aaPredicted RBP14.11□□□□□ -0.15
VPS53-218ENST00000575207 FN3KRPQ9HA64 309 aa14.11□□□□□ -0.15
VPS53-218ENST00000575207 PRM3Q9NNZ6 103 aa14.11□□□□□ -0.15
VPS53-218ENST00000575207 PAK5Q9P286 719 aa14.11□□□□□ -0.15
VPS53-218ENST00000575207 SLC17A6Q9P2U8 582 aa14.11□□□□□ -0.15
VPS53-218ENST00000575207 PRSS50Q9UI38 385 aa14.11□□□□□ -0.15
VPS53-218ENST00000575207 B9A039 149 aa14.1□□□□□ -0.15
VPS53-218ENST00000575207 YES1P07947 543 aa14.1□□□□□ -0.15
VPS53-218ENST00000575207 SERPINF1P36955 418 aa14.1□□□□□ -0.15
VPS53-218ENST00000575207 HNMTP50135 292 aa14.1□□□□□ -0.15
VPS53-218ENST00000575207 CDKN2DP55273 166 aa14.1□□□□□ -0.15
VPS53-218ENST00000575207 ZNF628Q5EBL2 1059 aa14.1□□□□□ -0.15
VPS53-218ENST00000575207 ARL13AQ5H913 290 aaPredicted RBP14.1□□□□□ -0.15
VPS53-218ENST00000575207 SAMD5Q5TGI4 173 aa14.1□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms