RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 C17orf50Q8WW18 174 aa6.08□□□□□ -1.44
VPS53-213ENST00000572334 WNT2BQ93097 391 aa6.08□□□□□ -1.44
VPS53-213ENST00000572334 INTS12Q96CB8 462 aaKnown RBP6.08□□□□□ -1.44
VPS53-213ENST00000572334 STARD4Q96DR4 205 aa6.08□□□□□ -1.44
VPS53-213ENST00000572334 MARK4Q96L34 752 aa6.08□□□□□ -1.44
VPS53-213ENST00000572334 DACH2Q96NX9 599 aa6.08□□□□□ -1.44
VPS53-213ENST00000572334 COL21A1Q96P44 957 aa6.08□□□□□ -1.44
VPS53-213ENST00000572334 ZIM3Q96PE6 472 aa6.08□□□□□ -1.44
VPS53-213ENST00000572334 ZNF382Q96SR6 550 aa6.08□□□□□ -1.44
VPS53-213ENST00000572334 ADOQ96SZ5 270 aa6.08□□□□□ -1.44
VPS53-213ENST00000572334 SFXN3Q9BWM7 321 aa6.08□□□□□ -1.44
VPS53-213ENST00000572334 RBM24Q9BX46 236 aaKnown RBP6.08□□□□□ -1.44
VPS53-213ENST00000572334 YIPF3Q9GZM5 350 aa6.08□□□□□ -1.44
VPS53-213ENST00000572334 MRPL46Q9H2W6 279 aaKnown RBP6.08□□□□□ -1.44
VPS53-213ENST00000572334 FOLH1BQ9HBA9 442 aa6.08□□□□□ -1.44
VPS53-213ENST00000572334 KLRF1Q9NZS2 232 aa6.08□□□□□ -1.44
VPS53-213ENST00000572334 STOML1Q9UBI4 398 aa6.08□□□□□ -1.44
VPS53-213ENST00000572334 VPS29Q9UBQ0 182 aa6.08□□□□□ -1.44
VPS53-213ENST00000572334 PRODH2Q9UF12 536 aa6.08□□□□□ -1.44
VPS53-213ENST00000572334 ZNF180Q9UJW8 692 aa6.08□□□□□ -1.44
VPS53-213ENST00000572334 UTS2RQ9UKP6 389 aa6.08□□□□□ -1.44
VPS53-213ENST00000572334 CFL2Q9Y281 166 aa6.08□□□□□ -1.44
VPS53-213ENST00000572334 DLGAP4Q9Y2H0 992 aa6.08□□□□□ -1.44
VPS53-213ENST00000572334 MRPS18CQ9Y3D5 142 aaKnown RBP6.08□□□□□ -1.44
VPS53-213ENST00000572334 ALPK2Q86TB3 2170 aa6.08□□□□□ -1.44
VPS53-213ENST00000572334 A0A1W2PNV4 684 aa6.07□□□□□ -1.44
VPS53-213ENST00000572334 SERTM1A2A2V5 107 aa6.07□□□□□ -1.44
VPS53-213ENST00000572334 SH3D21A4FU49 640 aa6.07□□□□□ -1.44
VPS53-213ENST00000572334 POC1B-GALNT4F8VUJ3 575 aa6.07□□□□□ -1.44
VPS53-213ENST00000572334 H0Y3Z8 333 aa6.07□□□□□ -1.44
VPS53-213ENST00000572334 UBFD1O14562 309 aaKnown RBP6.07□□□□□ -1.44
VPS53-213ENST00000572334 BIRC5O15392 142 aa6.07□□□□□ -1.44
VPS53-213ENST00000572334 FADS1O60427 444 aa6.07□□□□□ -1.44
VPS53-213ENST00000572334 PLOD3O60568 738 aa6.07□□□□□ -1.44
VPS53-213ENST00000572334 GUCY1B2O75343 617 aa6.07□□□□□ -1.44
VPS53-213ENST00000572334 ERN1O75460 977 aaKnown RBP6.07□□□□□ -1.44
VPS53-213ENST00000572334 REM1O75628 298 aa6.07□□□□□ -1.44
VPS53-213ENST00000572334 GOSR1O95249 250 aa6.07□□□□□ -1.44
VPS53-213ENST00000572334 CGAP01215 116 aa6.07□□□□□ -1.44
VPS53-213ENST00000572334 HSD3B1P14060 373 aa6.07□□□□□ -1.44
VPS53-213ENST00000572334 HOXB1P14653 301 aaPredicted RBP6.07□□□□□ -1.44
VPS53-213ENST00000572334 CPA3P15088 417 aa6.07□□□□□ -1.44
VPS53-213ENST00000572334 NQO1P15559 274 aaKnown RBP6.07□□□□□ -1.44
VPS53-213ENST00000572334 KRT15P19012 456 aa6.07□□□□□ -1.44
VPS53-213ENST00000572334 ATP6V1C1P21283 382 aa6.07□□□□□ -1.44
VPS53-213ENST00000572334 CHMP24386 653 aa6.07□□□□□ -1.44
VPS53-213ENST00000572334 GRK2P25098 689 aa6.07□□□□□ -1.44
VPS53-213ENST00000572334 HSD3B2P26439 372 aa6.07□□□□□ -1.44
VPS53-213ENST00000572334 ARL1P40616 181 aaPredicted RBP6.07□□□□□ -1.44
VPS53-213ENST00000572334 RANBP1P43487 201 aa6.07□□□□□ -1.44
VPS53-213ENST00000572334 KIR2DL2P43627 348 aaPredicted RBP6.07□□□□□ -1.44
VPS53-213ENST00000572334 ALDH9A1P49189 494 aa6.07□□□□□ -1.44
VPS53-213ENST00000572334 SERPINB9P50453 376 aa6.07□□□□□ -1.44
VPS53-213ENST00000572334 DGKQP52824 942 aa6.07□□□□□ -1.44
VPS53-213ENST00000572334 SUCLG1P53597 346 aaKnown RBP6.07□□□□□ -1.44
VPS53-213ENST00000572334 PNLIPRP2P54317 469 aa6.07□□□□□ -1.44
VPS53-213ENST00000572334 FOXA1P55317 472 aa6.07□□□□□ -1.44
VPS53-213ENST00000572334 SESN3P58005 492 aa6.07□□□□□ -1.44
VPS53-213ENST00000572334 FAM27E3Q08E93 113 aa6.07□□□□□ -1.44
VPS53-213ENST00000572334 CSTF3Q12996 717 aaKnown RBP6.07□□□□□ -1.44
VPS53-213ENST00000572334 RCAN2Q14206 197 aa6.07□□□□□ -1.44
VPS53-213ENST00000572334 SF3B4Q15427 424 aaKnown RBP eCLIP6.07□□□□□ -1.44
VPS53-213ENST00000572334 GUSBP1Q15486 140 aa6.07□□□□□ -1.44
VPS53-213ENST00000572334 TTMPQ5BVD1 217 aa6.07□□□□□ -1.44
VPS53-213ENST00000572334 SPDYAQ5MJ70 313 aa6.07□□□□□ -1.44
VPS53-213ENST00000572334 C6orf163Q5TEZ5 329 aa6.07□□□□□ -1.44
VPS53-213ENST00000572334 GALNT18Q6P9A2 607 aa6.07□□□□□ -1.44
VPS53-213ENST00000572334 TIFABQ6ZNK6 161 aa6.07□□□□□ -1.44
VPS53-213ENST00000572334 TRPM8Q7Z2W7 1104 aa6.07□□□□□ -1.44
VPS53-213ENST00000572334 BTLAQ7Z6A9 289 aa6.07□□□□□ -1.44
VPS53-213ENST00000572334 IFNEQ86WN2 208 aa6.07□□□□□ -1.44
VPS53-213ENST00000572334 ARHGAP24Q8N264 748 aa6.07□□□□□ -1.44
VPS53-213ENST00000572334 CIARTQ8N365 385 aaPredicted RBP6.07□□□□□ -1.44
VPS53-213ENST00000572334 OR2M3Q8NG83 312 aa6.07□□□□□ -1.44
VPS53-213ENST00000572334 OR14L1PQ8NHC6 308 aa6.07□□□□□ -1.44
VPS53-213ENST00000572334 UHMK1Q8TAS1 419 aaKnown RBP6.07□□□□□ -1.44
VPS53-213ENST00000572334 C16orf78Q8WTQ4 265 aa6.07□□□□□ -1.44
VPS53-213ENST00000572334 MZB1Q8WU39 189 aa6.07□□□□□ -1.44
VPS53-213ENST00000572334 SMPDL3BQ92485 455 aa6.07□□□□□ -1.44
VPS53-213ENST00000572334 EXOSC8Q96B26 276 aaKnown RBP6.07□□□□□ -1.44
VPS53-213ENST00000572334 EFHD2Q96C19 240 aaPredicted RBP6.07□□□□□ -1.44
VPS53-213ENST00000572334 ERP27Q96DN0 273 aa6.07□□□□□ -1.44
VPS53-213ENST00000572334 ARSGQ96EG1 525 aa6.07□□□□□ -1.44
VPS53-213ENST00000572334 THOC1Q96FV9 657 aaKnown RBP6.07□□□□□ -1.44
VPS53-213ENST00000572334 ZFP3Q96NJ6 502 aa6.07□□□□□ -1.44
VPS53-213ENST00000572334 WFIKKN1Q96NZ8 548 aa6.07□□□□□ -1.44
VPS53-213ENST00000572334 KCNA7Q96RP8 456 aa6.07□□□□□ -1.44
VPS53-213ENST00000572334 TM9SF2Q99805 663 aa6.07□□□□□ -1.44
VPS53-213ENST00000572334 GSTO2Q9H4Y5 243 aa6.07□□□□□ -1.44
VPS53-213ENST00000572334 CCDC134Q9H6E4 229 aa6.07□□□□□ -1.44
VPS53-213ENST00000572334 TNFRSF12AQ9NP84 129 aa6.07□□□□□ -1.44
VPS53-213ENST00000572334 SLC35C2Q9NQQ7 365 aa6.07□□□□□ -1.44
VPS53-213ENST00000572334 SIRT5Q9NXA8 310 aa6.07□□□□□ -1.44
VPS53-213ENST00000572334 TAS2R10Q9NYW0 307 aa6.07□□□□□ -1.44
VPS53-213ENST00000572334 EMCNQ9ULC0 261 aa6.07□□□□□ -1.44
VPS53-213ENST00000572334 SNX6Q9UNH7 406 aa6.07□□□□□ -1.44
VPS53-213ENST00000572334 TESMINQ9Y4I5 508 aa6.07□□□□□ -1.44
VPS53-213ENST00000572334 LRRC42Q9Y546 428 aa6.07□□□□□ -1.44
VPS53-213ENST00000572334 TIMM22Q9Y584 194 aa6.07□□□□□ -1.44
VPS53-213ENST00000572334 COMMD3-BMI1R4GMX3 469 aa6.07□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms