RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 SNX8Q9Y5X2 465 aa13.68□□□□□ -0.22
VPS39-210ENST00000568357 NCKAP5O14513 1909 aa13.67□□□□□ -0.22
VPS39-210ENST00000568357 SDHDO14521 159 aa13.67□□□□□ -0.22
VPS39-210ENST00000568357 SCO2O43819 266 aa13.67□□□□□ -0.22
VPS39-210ENST00000568357 KCNH1O95259 989 aa13.67□□□□□ -0.22
VPS39-210ENST00000568357 HMGN2P05204 90 aaKnown RBP13.67□□□□□ -0.22
VPS39-210ENST00000568357 CCT3P49368 545 aaKnown RBP13.67□□□□□ -0.22
VPS39-210ENST00000568357 WNT3P56703 355 aa13.67□□□□□ -0.22
VPS39-210ENST00000568357 LSM12Q3MHD2 195 aaKnown RBP13.67□□□□□ -0.22
VPS39-210ENST00000568357 VPS26BQ4G0F5 336 aa13.67□□□□□ -0.22
VPS39-210ENST00000568357 NHSL2Q5HYW2 709 aa13.67□□□□□ -0.22
VPS39-210ENST00000568357 DCST1Q5T197 706 aa13.67□□□□□ -0.22
VPS39-210ENST00000568357 C1orf185Q5T7R7 199 aa13.67□□□□□ -0.22
VPS39-210ENST00000568357 ATG16L1Q676U5 607 aa13.67□□□□□ -0.22
VPS39-210ENST00000568357 OR4F3Q6IEY1 312 aa13.67□□□□□ -0.22
VPS39-210ENST00000568357 ZCCHC12Q6PEW1 402 aa13.67□□□□□ -0.22
VPS39-210ENST00000568357 APOOLQ6UXV4 268 aa13.67□□□□□ -0.22
VPS39-210ENST00000568357 B3GNT6Q6ZMB0 384 aa13.67□□□□□ -0.22
VPS39-210ENST00000568357 ACAD11Q709F0 780 aa13.67□□□□□ -0.22
VPS39-210ENST00000568357 CAMKMTQ7Z624 323 aa13.67□□□□□ -0.22
VPS39-210ENST00000568357 MARCH3Q86UD3 253 aa13.67□□□□□ -0.22
VPS39-210ENST00000568357 WDR75Q8IWA0 830 aaKnown RBP13.67□□□□□ -0.22
VPS39-210ENST00000568357 ULK2Q8IYT8 1036 aa13.67□□□□□ -0.22
VPS39-210ENST00000568357 NATD1Q8N6N6 113 aa13.67□□□□□ -0.22
VPS39-210ENST00000568357 FAM110BQ8TC76 370 aa13.67□□□□□ -0.22
VPS39-210ENST00000568357 CA5BP1Q8WTZ4 195 aa13.67□□□□□ -0.22
VPS39-210ENST00000568357 ABTB1Q969K4 478 aaPredicted RBP13.67□□□□□ -0.22
VPS39-210ENST00000568357 UGT2B28Q9BY64 529 aa13.67□□□□□ -0.22
VPS39-210ENST00000568357 OR2B2Q9GZK3 357 aa13.67□□□□□ -0.22
VPS39-210ENST00000568357 WDR55Q9H6Y2 383 aaPredicted RBP13.67□□□□□ -0.22
VPS39-210ENST00000568357 ZCCHC3Q9NUD5 404 aaKnown RBP13.67□□□□□ -0.22
VPS39-210ENST00000568357 FAM120CQ9NX05 1096 aaKnown RBP13.67□□□□□ -0.22
VPS39-210ENST00000568357 COQ3Q9NZJ6 369 aa13.67□□□□□ -0.22
VPS39-210ENST00000568357 MARCOQ9UEW3 520 aaPredicted RBP13.67□□□□□ -0.22
VPS39-210ENST00000568357 MRTO4Q9UKD2 239 aaKnown RBP13.67□□□□□ -0.22
VPS39-210ENST00000568357 KDM4EB2RXH2 506 aaPredicted RBP13.66□□□□□ -0.22
VPS39-210ENST00000568357 HDAC3O15379 428 aa13.66□□□□□ -0.22
VPS39-210ENST00000568357 ZIC3O60481 467 aa13.66□□□□□ -0.22
VPS39-210ENST00000568357 SCN2BO60939 215 aa13.66□□□□□ -0.22
VPS39-210ENST00000568357 KCNK2O95069 426 aa13.66□□□□□ -0.22
VPS39-210ENST00000568357 UTS2O95399 124 aa13.66□□□□□ -0.22
VPS39-210ENST00000568357 HOXD4P09016 255 aaPredicted RBP13.66□□□□□ -0.22
VPS39-210ENST00000568357 ALOX5P09917 674 aa13.66□□□□□ -0.22
VPS39-210ENST00000568357 ALDOCP09972 364 aaKnown RBP13.66□□□□□ -0.22
VPS39-210ENST00000568357 KITP10721 976 aa13.66□□□□□ -0.22
VPS39-210ENST00000568357 GABRA1P14867 456 aa13.66□□□□□ -0.22
VPS39-210ENST00000568357 ADH7P40394 386 aa13.66□□□□□ -0.22
VPS39-210ENST00000568357 PSMD4P55036 377 aaKnown RBP13.66□□□□□ -0.22
VPS39-210ENST00000568357 HBA1P69905 142 aa13.66□□□□□ -0.22
VPS39-210ENST00000568357 PHC1P78364 1004 aa13.66□□□□□ -0.22
VPS39-210ENST00000568357 PRR5P85299 388 aa13.66□□□□□ -0.22
VPS39-210ENST00000568357 OCRLQ01968 901 aa13.66□□□□□ -0.22
VPS39-210ENST00000568357 GRAMD1BQ3KR37 738 aa13.66□□□□□ -0.22
VPS39-210ENST00000568357 TTMPQ5BVD1 217 aa13.66□□□□□ -0.22
VPS39-210ENST00000568357 FIGNL1Q6PIW4 674 aa13.66□□□□□ -0.22
VPS39-210ENST00000568357 SEM1Q6ZVN7 128 aa13.66□□□□□ -0.22
VPS39-210ENST00000568357 ZAR1Q86SH2 424 aa13.66□□□□□ -0.22
VPS39-210ENST00000568357 LRRC34Q8IZ02 419 aa13.66□□□□□ -0.22
VPS39-210ENST00000568357 CLECL1Q8IZS7 167 aa13.66□□□□□ -0.22
VPS39-210ENST00000568357 OR10Q1Q8NGQ4 319 aa13.66□□□□□ -0.22
VPS39-210ENST00000568357 OR4C3Q8NH37 302 aa13.66□□□□□ -0.22
VPS39-210ENST00000568357 OR14L1PQ8NHC6 308 aa13.66□□□□□ -0.22
VPS39-210ENST00000568357 LILRB4Q8NHJ6 448 aa13.66□□□□□ -0.22
VPS39-210ENST00000568357 RAB3IL1Q8TBN0 382 aa13.66□□□□□ -0.22
VPS39-210ENST00000568357 DUSP19Q8WTR2 217 aa13.66□□□□□ -0.22
VPS39-210ENST00000568357 ZNF75CPQ92670 426 aaPredicted RBP13.66□□□□□ -0.22
VPS39-210ENST00000568357 POM121Q96HA1 1249 aa13.66□□□□□ -0.22
VPS39-210ENST00000568357 WDYHV1Q96HA8 205 aa13.66□□□□□ -0.22
VPS39-210ENST00000568357 ATP6V1G3Q96LB4 118 aa13.66□□□□□ -0.22
VPS39-210ENST00000568357 UCK2Q9BZX2 261 aa13.66□□□□□ -0.22
VPS39-210ENST00000568357 DPY30Q9C005 99 aa13.66□□□□□ -0.22
VPS39-210ENST00000568357 PRDM14Q9GZV8 571 aa13.66□□□□□ -0.22
VPS39-210ENST00000568357 DSN1Q9H410 356 aa13.66□□□□□ -0.22
VPS39-210ENST00000568357 GPATCH2Q9NW75 528 aa13.66□□□□□ -0.22
VPS39-210ENST00000568357 TAS2R10Q9NYW0 307 aa13.66□□□□□ -0.22
VPS39-210ENST00000568357 MED11Q9P086 117 aa13.66□□□□□ -0.22
VPS39-210ENST00000568357 PPP4R1LQ9P1A2 415 aa13.66□□□□□ -0.22
VPS39-210ENST00000568357 ABCG2Q9UNQ0 655 aa13.66□□□□□ -0.22
VPS39-210ENST00000568357 EXPH5Q8NEV8 1989 aa13.65□□□□□ -0.22
VPS39-210ENST00000568357 NCOA6Q14686 2063 aaPredicted RBP13.65□□□□□ -0.22
VPS39-210ENST00000568357 A0A0G2JNJ9 132 aa13.65□□□□□ -0.22
VPS39-210ENST00000568357 GOLGA8QA0A0J9YX86 632 aa13.65□□□□□ -0.22
VPS39-210ENST00000568357 GOLGA8OA6NCC3 632 aa13.65□□□□□ -0.22
VPS39-210ENST00000568357 AHRRA9YTQ3 701 aa13.65□□□□□ -0.22
VPS39-210ENST00000568357 GOLGA8NF8WBI6 632 aa13.65□□□□□ -0.22
VPS39-210ENST00000568357 CFLARO15519 480 aa13.65□□□□□ -0.22
VPS39-210ENST00000568357 TOXO94900 526 aa13.65□□□□□ -0.22
VPS39-210ENST00000568357 ACTL6AO96019 429 aa13.65□□□□□ -0.22
VPS39-210ENST00000568357 H2AFXP16104 143 aaPredicted RBP13.65□□□□□ -0.22
VPS39-210ENST00000568357 EPHA3P29320 983 aa13.65□□□□□ -0.22
VPS39-210ENST00000568357 SRD5A2P31213 254 aa13.65□□□□□ -0.22
VPS39-210ENST00000568357 KIR3DL1P43629 444 aa13.65□□□□□ -0.22
VPS39-210ENST00000568357 PRIM2P49643 509 aa13.65□□□□□ -0.22
VPS39-210ENST00000568357 STX5Q13190 355 aa13.65□□□□□ -0.22
VPS39-210ENST00000568357 TP53BP2Q13625 1128 aa13.65□□□□□ -0.22
VPS39-210ENST00000568357 LASP1Q14847 261 aaKnown RBP13.65□□□□□ -0.22
VPS39-210ENST00000568357 OGFOD2Q6N063 350 aa13.65□□□□□ -0.22
VPS39-210ENST00000568357 MAVSQ7Z434 540 aa13.65□□□□□ -0.22
VPS39-210ENST00000568357 TRIM42Q8IWZ5 723 aa13.65□□□□□ -0.22
VPS39-210ENST00000568357 CLEC4FQ8N1N0 589 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms