RNA–Protein interactions for RNA: ENST00000556422.5

TMEM260-210, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 3,864 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-210ENST00000556422 NEIL2Q969S2 332 aa4.8□□□□□ -1.64
TMEM260-210ENST00000556422 TMEM159Q96B96 161 aa4.8□□□□□ -1.64
TMEM260-210ENST00000556422 DMRTB1Q96MA1 342 aa4.8□□□□□ -1.64
TMEM260-210ENST00000556422 MTERF1Q99551 399 aaKnown RBP4.8□□□□□ -1.64
TMEM260-210ENST00000556422 ADI1Q9BV57 179 aa4.8□□□□□ -1.64
TMEM260-210ENST00000556422 EBPLQ9BY08 206 aa4.8□□□□□ -1.64
TMEM260-210ENST00000556422 KCNH6Q9H252 994 aa4.8□□□□□ -1.64
TMEM260-210ENST00000556422 EPHX3Q9H6B9 360 aa4.8□□□□□ -1.64
TMEM260-210ENST00000556422 CA14Q9ULX7 337 aa4.8□□□□□ -1.64
TMEM260-210ENST00000556422 YBX2Q9Y2T7 364 aaKnown RBP4.8□□□□□ -1.64
TMEM260-210ENST00000556422 TNRC18O15417 2968 aaPredicted RBP4.8□□□□□ -1.64
TMEM260-210ENST00000556422 MDC1Q14676 2089 aaKnown RBP4.8□□□□□ -1.64
TMEM260-210ENST00000556422 GOLGA4Q13439 2230 aaKnown RBP4.79□□□□□ -1.64
TMEM260-210ENST00000556422 TRABD2BA6NFA1 517 aa4.79□□□□□ -1.64
TMEM260-210ENST00000556422 QSOX1O00391 747 aa4.79□□□□□ -1.64
TMEM260-210ENST00000556422 RGS10O43665 173 aa4.79□□□□□ -1.64
TMEM260-210ENST00000556422 KHDRBS3O75525 346 aaKnown RBP4.79□□□□□ -1.64
TMEM260-210ENST00000556422 PRKRAO75569 313 aaKnown RBP4.79□□□□□ -1.64
TMEM260-210ENST00000556422 SULT1C4O75897 302 aa4.79□□□□□ -1.64
TMEM260-210ENST00000556422 C1orf105O95561 183 aa4.79□□□□□ -1.64
TMEM260-210ENST00000556422 PRNPP04156 253 aa4.79□□□□□ -1.64
TMEM260-210ENST00000556422 S100A8P05109 93 aa4.79□□□□□ -1.64
TMEM260-210ENST00000556422 GSNP06396 782 aa4.79□□□□□ -1.64
TMEM260-210ENST00000556422 HCKP08631 526 aa4.79□□□□□ -1.64
TMEM260-210ENST00000556422 GSTP1P09211 210 aaKnown RBP4.79□□□□□ -1.64
TMEM260-210ENST00000556422 CDH2P19022 906 aaPredicted RBP4.79□□□□□ -1.64
TMEM260-210ENST00000556422 EIF2DP41214 584 aaKnown RBP4.79□□□□□ -1.64
TMEM260-210ENST00000556422 BUD31P41223 144 aaPredicted RBP4.79□□□□□ -1.64
TMEM260-210ENST00000556422 HSF2Q03933 536 aa4.79□□□□□ -1.64
TMEM260-210ENST00000556422 DPTQ07507 201 aa4.79□□□□□ -1.64
TMEM260-210ENST00000556422 HFEQ30201 348 aa4.79□□□□□ -1.64
TMEM260-210ENST00000556422 PLA1AQ53H76 456 aa4.79□□□□□ -1.64
TMEM260-210ENST00000556422 ZMAT1Q5H9K5 638 aa4.79□□□□□ -1.64
TMEM260-210ENST00000556422 ATPAF1Q5TC12 328 aaPredicted RBP4.79□□□□□ -1.64
TMEM260-210ENST00000556422 GRHL2Q6ISB3 625 aa4.79□□□□□ -1.64
TMEM260-210ENST00000556422 CDC73Q6P1J9 531 aa4.79□□□□□ -1.64
TMEM260-210ENST00000556422 CHRDL2Q6WN34 429 aa4.79□□□□□ -1.64
TMEM260-210ENST00000556422 USP30Q70CQ3 517 aa4.79□□□□□ -1.64
TMEM260-210ENST00000556422 MCATQ8IVS2 390 aaKnown RBP4.79□□□□□ -1.64
TMEM260-210ENST00000556422 FAM47BQ8NA70 645 aa4.79□□□□□ -1.64
TMEM260-210ENST00000556422 OR52E4Q8NGH9 312 aa4.79□□□□□ -1.64
TMEM260-210ENST00000556422 TRUB1Q8WWH5 349 aaKnown RBP4.79□□□□□ -1.64
TMEM260-210ENST00000556422 HSD17B8Q92506 261 aa4.79□□□□□ -1.64
TMEM260-210ENST00000556422 SMARCD2Q92925 531 aa4.79□□□□□ -1.64
TMEM260-210ENST00000556422 NINJ1Q92982 152 aa4.79□□□□□ -1.64
TMEM260-210ENST00000556422 FBXO17Q96EF6 278 aa4.79□□□□□ -1.64
TMEM260-210ENST00000556422 RNF145Q96MT1 663 aa4.79□□□□□ -1.64
TMEM260-210ENST00000556422 TCEAL7Q9BRU2 100 aa4.79□□□□□ -1.64
TMEM260-210ENST00000556422 IGFLR1Q9H665 355 aa4.79□□□□□ -1.64
TMEM260-210ENST00000556422 SOX17Q9H6I2 414 aaPredicted RBP4.79□□□□□ -1.64
TMEM260-210ENST00000556422 UNKLQ9H9P5 680 aaKnown RBP4.79□□□□□ -1.64
TMEM260-210ENST00000556422 RAD18Q9NS91 495 aa4.79□□□□□ -1.64
TMEM260-210ENST00000556422 CENPMQ9NSP4 180 aa4.79□□□□□ -1.64
TMEM260-210ENST00000556422 MRPS2Q9Y399 296 aaKnown RBP4.79□□□□□ -1.64
TMEM260-210ENST00000556422 A0A087WV62 115 aa4.79□□□□□ -1.64
TMEM260-210ENST00000556422 A0A096LPI6 279 aa4.79□□□□□ -1.64
TMEM260-210ENST00000556422 A0A0U1RQV5 110 aa4.79□□□□□ -1.64
TMEM260-210ENST00000556422 MAGEB17A8MXT2 336 aa4.79□□□□□ -1.64
TMEM260-210ENST00000556422 NPIPA2E9PIF3 369 aa4.79□□□□□ -1.64
TMEM260-210ENST00000556422 H3BNH8 94 aa4.79□□□□□ -1.64
TMEM260-210ENST00000556422 MMP20O60882 483 aa4.79□□□□□ -1.64
TMEM260-210ENST00000556422 LDLRP01130 860 aa4.79□□□□□ -1.64
TMEM260-210ENST00000556422 YES1P07947 543 aa4.79□□□□□ -1.64
TMEM260-210ENST00000556422 FCGR1AP12314 374 aa4.79□□□□□ -1.64
TMEM260-210ENST00000556422 MYF6P23409 242 aa4.79□□□□□ -1.64
TMEM260-210ENST00000556422 ALDH9A1P49189 494 aa4.79□□□□□ -1.64
TMEM260-210ENST00000556422 OR2B6P58173 313 aa4.79□□□□□ -1.64
TMEM260-210ENST00000556422 ST8SIA6P61647 398 aa4.79□□□□□ -1.64
TMEM260-210ENST00000556422 TBPL1P62380 186 aa4.79□□□□□ -1.64
TMEM260-210ENST00000556422 IRF8Q02556 426 aa4.79□□□□□ -1.64
TMEM260-210ENST00000556422 GPM6BQ13491 265 aa4.79□□□□□ -1.64
TMEM260-210ENST00000556422 DNASE1L3Q13609 305 aa4.79□□□□□ -1.64
TMEM260-210ENST00000556422 DGCR6Q14129 220 aa4.79□□□□□ -1.64
TMEM260-210ENST00000556422 GANABQ14697 944 aaKnown RBP4.79□□□□□ -1.64
TMEM260-210ENST00000556422 MFSD13AQ14CX5 517 aa4.79□□□□□ -1.64
TMEM260-210ENST00000556422 DUSP6Q16828 381 aa4.79□□□□□ -1.64
TMEM260-210ENST00000556422 SYTL3Q4VX76 610 aa4.79□□□□□ -1.64
TMEM260-210ENST00000556422 TRIM61Q5EBN2 209 aa4.79□□□□□ -1.64
TMEM260-210ENST00000556422 XKR6Q5GH73 641 aa4.79□□□□□ -1.64
TMEM260-210ENST00000556422 OR4F3Q6IEY1 312 aa4.79□□□□□ -1.64
TMEM260-210ENST00000556422 ULK3Q6PHR2 472 aa4.79□□□□□ -1.64
TMEM260-210ENST00000556422 VITQ6UXI7 678 aa4.79□□□□□ -1.64
TMEM260-210ENST00000556422 BTLAQ7Z6A9 289 aa4.79□□□□□ -1.64
TMEM260-210ENST00000556422 PLA2G15Q8NCC3 412 aa4.79□□□□□ -1.64
TMEM260-210ENST00000556422 AGBL5Q8NDL9 886 aa4.79□□□□□ -1.64
TMEM260-210ENST00000556422 OR7G3Q8NG95 312 aa4.79□□□□□ -1.64
TMEM260-210ENST00000556422 OR7A2PQ8NGA2 310 aa4.79□□□□□ -1.64
TMEM260-210ENST00000556422 OIT3Q8WWZ8 545 aa4.79□□□□□ -1.64
TMEM260-210ENST00000556422 NUS1Q96E22 293 aa4.79□□□□□ -1.64
TMEM260-210ENST00000556422 MED8Q96G25 268 aa4.79□□□□□ -1.64
TMEM260-210ENST00000556422 FBXL20Q96IG2 436 aa4.79□□□□□ -1.64
TMEM260-210ENST00000556422 NRTNQ99748 197 aa4.79□□□□□ -1.64
TMEM260-210ENST00000556422 VPS25Q9BRG1 176 aa4.79□□□□□ -1.64
TMEM260-210ENST00000556422 OR2AG1Q9H205 316 aa4.79□□□□□ -1.64
TMEM260-210ENST00000556422 SPNS1Q9H2V7 528 aa4.79□□□□□ -1.64
TMEM260-210ENST00000556422 METTL7AQ9H8H3 244 aa4.79□□□□□ -1.64
TMEM260-210ENST00000556422 HMG20AQ9NP66 347 aa4.79□□□□□ -1.64
TMEM260-210ENST00000556422 DEC1Q9P2X7 70 aa4.79□□□□□ -1.64
TMEM260-210ENST00000556422 CTSFQ9UBX1 484 aa4.79□□□□□ -1.64
TMEM260-210ENST00000556422 ZNF282Q9UDV7 671 aaPredicted RBP4.79□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms