RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 A0A0A6YYJ9 748 aa11.5□□□□□ -0.57
SHMT2-207ENST00000553837 TRBC2A0A5B9 178 aa11.5□□□□□ -0.57
SHMT2-207ENST00000553837 FFAR1O14842 300 aa11.5□□□□□ -0.57
SHMT2-207ENST00000553837 LCMT2O60294 686 aaKnown RBP11.5□□□□□ -0.57
SHMT2-207ENST00000553837 SEMA7AO75326 666 aa11.5□□□□□ -0.57
SHMT2-207ENST00000553837 DHFRP00374 187 aa11.5□□□□□ -0.57
SHMT2-207ENST00000553837 GASTP01350 101 aa11.5□□□□□ -0.57
SHMT2-207ENST00000553837 STATHP02808 62 aa11.5□□□□□ -0.57
SHMT2-207ENST00000553837 RAB3AP20336 220 aa11.5□□□□□ -0.57
SHMT2-207ENST00000553837 UQCRC2P22695 453 aa11.5□□□□□ -0.57
SHMT2-207ENST00000553837 RPL3P39023 403 aaKnown RBP11.5□□□□□ -0.57
SHMT2-207ENST00000553837 GSTM5P46439 218 aa11.5□□□□□ -0.57
SHMT2-207ENST00000553837 TPMTP51580 245 aa11.5□□□□□ -0.57
SHMT2-207ENST00000553837 DGKEP52429 567 aa11.5□□□□□ -0.57
SHMT2-207ENST00000553837 RPA4Q13156 261 aa11.5□□□□□ -0.57
SHMT2-207ENST00000553837 FGL2Q14314 439 aa11.5□□□□□ -0.57
SHMT2-207ENST00000553837 ZNF630Q2M218 657 aaPredicted RBP11.5□□□□□ -0.57
SHMT2-207ENST00000553837 PLK5Q496M5 336 aa11.5□□□□□ -0.57
SHMT2-207ENST00000553837 AGBL4Q5VU57 503 aa11.5□□□□□ -0.57
SHMT2-207ENST00000553837 ZNF57Q68EA5 555 aaPredicted RBP11.5□□□□□ -0.57
SHMT2-207ENST00000553837 KIAA1324Q6UXG2 1013 aaKnown RBP11.5□□□□□ -0.57
SHMT2-207ENST00000553837 VITQ6UXI7 678 aa11.5□□□□□ -0.57
SHMT2-207ENST00000553837 FAM92BQ6ZTR7 304 aa11.5□□□□□ -0.57
SHMT2-207ENST00000553837 IKBIPQ70UQ0 350 aa11.5□□□□□ -0.57
SHMT2-207ENST00000553837 LAPTM4BQ86VI4 370 aa11.5□□□□□ -0.57
SHMT2-207ENST00000553837 CDH26Q8IXH8 852 aa11.5□□□□□ -0.57
SHMT2-207ENST00000553837 KRT78Q8N1N4 520 aa11.5□□□□□ -0.57
SHMT2-207ENST00000553837 APOBEC4Q8WW27 367 aaKnown RBP11.5□□□□□ -0.57
SHMT2-207ENST00000553837 KLK6Q92876 244 aa11.5□□□□□ -0.57
SHMT2-207ENST00000553837 RAB8BQ92930 207 aa11.5□□□□□ -0.57
SHMT2-207ENST00000553837 RBPMSQ93062 196 aaKnown RBP11.5□□□□□ -0.57
SHMT2-207ENST00000553837 PTP4A1Q93096 173 aa11.5□□□□□ -0.57
SHMT2-207ENST00000553837 C1GALT1C1Q96EU7 318 aa11.5□□□□□ -0.57
SHMT2-207ENST00000553837 PLA2G2FQ9BZM2 168 aa11.5□□□□□ -0.57
SHMT2-207ENST00000553837 ZFP64Q9NPA5 681 aa11.5□□□□□ -0.57
SHMT2-207ENST00000553837 SIRT3Q9NTG7 399 aaPredicted RBP11.5□□□□□ -0.57
SHMT2-207ENST00000553837 TEX10Q9NXF1 929 aaPredicted RBP11.5□□□□□ -0.57
SHMT2-207ENST00000553837 IGKV1-8A0A0C4DH67 115 aa11.49□□□□□ -0.57
SHMT2-207ENST00000553837 A0A0G2JN53 185 aa11.49□□□□□ -0.57
SHMT2-207ENST00000553837 RPS10-NUDT3A0A1W2PQS6 291 aa11.49□□□□□ -0.57
SHMT2-207ENST00000553837 STK25O00506 426 aa11.49□□□□□ -0.57
SHMT2-207ENST00000553837 SLC30A4O14863 429 aa11.49□□□□□ -0.57
SHMT2-207ENST00000553837 CA3P07451 260 aa11.49□□□□□ -0.57
SHMT2-207ENST00000553837 STOMP27105 288 aa11.49□□□□□ -0.57
SHMT2-207ENST00000553837 GJA4P35212 333 aa11.49□□□□□ -0.57
SHMT2-207ENST00000553837 CLCNKAP51800 687 aa11.49□□□□□ -0.57
SHMT2-207ENST00000553837 ATP12AP54707 1039 aa11.49□□□□□ -0.57
SHMT2-207ENST00000553837 LIM2P55344 173 aa11.49□□□□□ -0.57
SHMT2-207ENST00000553837 FGFBP1Q14512 234 aa11.49□□□□□ -0.57
SHMT2-207ENST00000553837 P2RY14Q15391 338 aa11.49□□□□□ -0.57
SHMT2-207ENST00000553837 TSC22D1Q15714 1073 aa11.49□□□□□ -0.57
SHMT2-207ENST00000553837 MLF2Q15773 248 aaPredicted RBP11.49□□□□□ -0.57
SHMT2-207ENST00000553837 PSRC1Q6PGN9 363 aaPredicted RBP11.49□□□□□ -0.57
SHMT2-207ENST00000553837 CEACAM20Q6UY09 585 aa11.49□□□□□ -0.57
SHMT2-207ENST00000553837 ABI3BPQ7Z7G0 1075 aa11.49□□□□□ -0.57
SHMT2-207ENST00000553837 GPR32P1Q8NGA4 272 aa11.49□□□□□ -0.57
SHMT2-207ENST00000553837 OR52P1PQ8NH57 321 aa11.49□□□□□ -0.57
SHMT2-207ENST00000553837 PHOSPHO2Q8TCD6 241 aa11.49□□□□□ -0.57
SHMT2-207ENST00000553837 SLC38A5Q8WUX1 472 aa11.49□□□□□ -0.57
SHMT2-207ENST00000553837 AHCYL2Q96HN2 611 aaKnown RBP11.49□□□□□ -0.57
SHMT2-207ENST00000553837 DPCDQ9BVM2 203 aaPredicted RBP11.49□□□□□ -0.57
SHMT2-207ENST00000553837 PRR14Q9BWN1 585 aa11.49□□□□□ -0.57
SHMT2-207ENST00000553837 RERGLQ9H628 205 aa11.49□□□□□ -0.57
SHMT2-207ENST00000553837 XKR8Q9H6D3 395 aa11.49□□□□□ -0.57
SHMT2-207ENST00000553837 DNAJC27Q9NZQ0 273 aa11.49□□□□□ -0.57
SHMT2-207ENST00000553837 MALT1Q9UDY8 824 aa11.49□□□□□ -0.57
SHMT2-207ENST00000553837 ZNF222Q9UK12 451 aa11.49□□□□□ -0.57
SHMT2-207ENST00000553837 PLEKHM1Q9Y4G2 1056 aa11.49□□□□□ -0.57
SHMT2-207ENST00000553837 SZT2Q5T011 3432 aa11.49□□□□□ -0.57
SHMT2-207ENST00000553837 NUMA1Q14980 2115 aa11.49□□□□□ -0.57
SHMT2-207ENST00000553837 ANKDD1BA6NHY2 528 aa11.48□□□□□ -0.57
SHMT2-207ENST00000553837 C1QTNF3-AMACRE9PGA6 284 aa11.48□□□□□ -0.57
SHMT2-207ENST00000553837 HPGDSO60760 199 aa11.48□□□□□ -0.57
SHMT2-207ENST00000553837 ANXA3P12429 323 aa11.48□□□□□ -0.57
SHMT2-207ENST00000553837 MAOBP27338 520 aa11.48□□□□□ -0.57
SHMT2-207ENST00000553837 PRKAR1BP31321 381 aa11.48□□□□□ -0.57
SHMT2-207ENST00000553837 GBX2P52951 348 aaPredicted RBP11.48□□□□□ -0.57
SHMT2-207ENST00000553837 PCBP4P57723 403 aaKnown RBP11.48□□□□□ -0.57
SHMT2-207ENST00000553837 REEP5Q00765 189 aa11.48□□□□□ -0.57
SHMT2-207ENST00000553837 HSF2Q03933 536 aa11.48□□□□□ -0.57
SHMT2-207ENST00000553837 HSPB3Q12988 150 aa11.48□□□□□ -0.57
SHMT2-207ENST00000553837 GPM6BQ13491 265 aa11.48□□□□□ -0.57
SHMT2-207ENST00000553837 EXOSC2Q13868 293 aaKnown RBP11.48□□□□□ -0.57
SHMT2-207ENST00000553837 SNAPC1Q16533 368 aa11.48□□□□□ -0.57
SHMT2-207ENST00000553837 MZT2AQ6P582 158 aa11.48□□□□□ -0.57
SHMT2-207ENST00000553837 TMEM81Q6P7N7 255 aa11.48□□□□□ -0.57
SHMT2-207ENST00000553837 CASP12Q6UXS9 341 aa11.48□□□□□ -0.57
SHMT2-207ENST00000553837 ZNF655Q8N720 491 aaPredicted RBP11.48□□□□□ -0.57
SHMT2-207ENST00000553837 GEMIN6Q8WXD5 167 aaKnown RBP11.48□□□□□ -0.57
SHMT2-207ENST00000553837 NEURL3Q96EH8 262 aa11.48□□□□□ -0.57
SHMT2-207ENST00000553837 PELI2Q9HAT8 420 aa11.48□□□□□ -0.57
SHMT2-207ENST00000553837 MCCC2Q9HCC0 563 aa11.48□□□□□ -0.57
SHMT2-207ENST00000553837 C11orf16Q9NQ32 467 aa11.48□□□□□ -0.57
SHMT2-207ENST00000553837 ADAM30Q9UKF2 790 aa11.48□□□□□ -0.57
SHMT2-207ENST00000553837 SPIN1Q9Y657 262 aaPredicted RBP11.48□□□□□ -0.57
SHMT2-207ENST00000553837 DNMT3AQ9Y6K1 912 aaPredicted RBP11.48□□□□□ -0.57
SHMT2-207ENST00000553837 ENPP4Q9Y6X5 453 aa11.48□□□□□ -0.57
SHMT2-207ENST00000553837 DNAH14Q0VDD8 3507 aa11.48□□□□□ -0.57
SHMT2-207ENST00000553837 HEATR5BQ9P2D3 2071 aa11.48□□□□□ -0.57
SHMT2-207ENST00000553837 PRAMEF27A3QJZ7 478 aa11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms