RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 BTG2P78543 158 aa24.48■■□□□ 1.51
CCDC88C-205ENST00000553403 ERV3-1Q14264 604 aa24.48■■□□□ 1.51
CCDC88C-205ENST00000553403 ENTPD8Q5MY95 495 aa24.48■■□□□ 1.51
CCDC88C-205ENST00000553403 PLEKHM3Q6ZWE6 761 aa24.48■■□□□ 1.51
CCDC88C-205ENST00000553403 NLGN4XQ8N0W4 816 aa24.48■■□□□ 1.51
CCDC88C-205ENST00000553403 Q8N9G6 341 aaPredicted RBP24.48■■□□□ 1.51
CCDC88C-205ENST00000553403 GNPDA2Q8TDQ7 276 aa24.48■■□□□ 1.51
CCDC88C-205ENST00000553403 SLC41A2Q96JW4 573 aa24.48■■□□□ 1.51
CCDC88C-205ENST00000553403 CTPS2Q9NRF8 586 aa24.48■■□□□ 1.51
CCDC88C-205ENST00000553403 FKBP14Q9NWM8 211 aa24.48■■□□□ 1.51
CCDC88C-205ENST00000553403 TMEM184BQ9Y519 407 aaPredicted RBP24.48■■□□□ 1.51
CCDC88C-205ENST00000553403 HEMK1Q9Y5R4 338 aaPredicted RBP24.48■■□□□ 1.51
CCDC88C-205ENST00000553403 A0A087WUU8 490 aa24.47■■□□□ 1.51
CCDC88C-205ENST00000553403 GXYLT2A0PJZ3 443 aa24.47■■□□□ 1.51
CCDC88C-205ENST00000553403 SH3D21A4FU49 640 aa24.47■■□□□ 1.51
CCDC88C-205ENST00000553403 CPSF4LA6NMK7 179 aaKnown RBP24.47■■□□□ 1.51
CCDC88C-205ENST00000553403 TMEM150CB9EJG8 249 aa24.47■■□□□ 1.51
CCDC88C-205ENST00000553403 NOL3O60936 208 aaKnown RBP24.47■■□□□ 1.51
CCDC88C-205ENST00000553403 MSL3P1P0C860 447 aa24.47■■□□□ 1.51
CCDC88C-205ENST00000553403 NID1P14543 1247 aa24.47■■□□□ 1.51
CCDC88C-205ENST00000553403 PCSK6P29122 969 aa24.47■■□□□ 1.51
CCDC88C-205ENST00000553403 EPHA8P29322 1005 aaPredicted RBP24.47■■□□□ 1.51
CCDC88C-205ENST00000553403 AVPR2P30518 371 aa24.47■■□□□ 1.51
CCDC88C-205ENST00000553403 CSF2RBP32927 897 aa24.47■■□□□ 1.51
CCDC88C-205ENST00000553403 TRHRP34981 398 aaPredicted RBP24.47■■□□□ 1.51
CCDC88C-205ENST00000553403 SEPHS1P49903 392 aa24.47■■□□□ 1.51
CCDC88C-205ENST00000553403 EMDP50402 254 aa24.47■■□□□ 1.51
CCDC88C-205ENST00000553403 TMEM236Q5W0B7 351 aa24.47■■□□□ 1.51
CCDC88C-205ENST00000553403 C12orf73Q69YU5 71 aa24.47■■□□□ 1.51
CCDC88C-205ENST00000553403 MYDGFQ969H8 173 aa24.47■■□□□ 1.51
CCDC88C-205ENST00000553403 DUSP23Q9BVJ7 150 aa24.47■■□□□ 1.51
CCDC88C-205ENST00000553403 CDC123O75794 336 aaPredicted RBP24.46■■□□□ 1.51
CCDC88C-205ENST00000553403 TP53P04637 393 aaPredicted RBP24.46■■□□□ 1.51
CCDC88C-205ENST00000553403 MAPK14Q16539 360 aa24.46■■□□□ 1.51
CCDC88C-205ENST00000553403 DECR1Q16698 335 aa24.46■■□□□ 1.51
CCDC88C-205ENST00000553403 KANSL1Q7Z3B3 1105 aa24.46■■□□□ 1.51
CCDC88C-205ENST00000553403 METTL27Q8N6F8 245 aaPredicted RBP24.46■■□□□ 1.51
CCDC88C-205ENST00000553403 RORBQ92753 470 aa24.46■■□□□ 1.51
CCDC88C-205ENST00000553403 PRR14Q9BWN1 585 aa24.46■■□□□ 1.51
CCDC88C-205ENST00000553403 ARMC7Q9H6L4 198 aa24.46■■□□□ 1.51
CCDC88C-205ENST00000553403 FBXO34Q9NWN3 711 aa24.46■■□□□ 1.51
CCDC88C-205ENST00000553403 PILRBQ9UKJ0 227 aa24.46■■□□□ 1.51
CCDC88C-205ENST00000553403 MMACHCQ9Y4U1 282 aa24.46■■□□□ 1.51
CCDC88C-205ENST00000553403 TRIM64BA6NI03 449 aa24.46■■□□□ 1.51
CCDC88C-205ENST00000553403 TTC36A6NLP5 189 aa24.46■■□□□ 1.51
CCDC88C-205ENST00000553403 CLCA1A8K7I4 914 aa24.46■■□□□ 1.51
CCDC88C-205ENST00000553403 H3BMQ9 156 aa24.46■■□□□ 1.51
CCDC88C-205ENST00000553403 PRAMEF2O60811 474 aa24.46■■□□□ 1.51
CCDC88C-205ENST00000553403 KCNK2O95069 426 aa24.46■■□□□ 1.51
CCDC88C-205ENST00000553403 PNLIPP16233 465 aa24.46■■□□□ 1.51
CCDC88C-205ENST00000553403 GCGRP47871 477 aa24.46■■□□□ 1.51
CCDC88C-205ENST00000553403 SNRPGP62308 76 aaKnown RBP24.46■■□□□ 1.51
CCDC88C-205ENST00000553403 PSG6Q00889 435 aa24.46■■□□□ 1.51
CCDC88C-205ENST00000553403 FIGNL1Q6PIW4 674 aa24.46■■□□□ 1.51
CCDC88C-205ENST00000553403 PTCHD4Q6ZW05 846 aa24.46■■□□□ 1.51
CCDC88C-205ENST00000553403 AHSA2Q719I0 299 aa24.46■■□□□ 1.51
CCDC88C-205ENST00000553403 RANBP3LQ86VV4 465 aaPredicted RBP24.46■■□□□ 1.51
CCDC88C-205ENST00000553403 TRUB1Q8WWH5 349 aaKnown RBP24.46■■□□□ 1.51
CCDC88C-205ENST00000553403 GAB3Q8WWW8 586 aa24.46■■□□□ 1.51
CCDC88C-205ENST00000553403 SLC41A3Q96GZ6 507 aa24.46■■□□□ 1.51
CCDC88C-205ENST00000553403 COG8Q96MW5 612 aa24.46■■□□□ 1.51
CCDC88C-205ENST00000553403 VSTM2LQ96N03 204 aa24.46■■□□□ 1.51
CCDC88C-205ENST00000553403 RHNO1Q9BSD3 238 aa24.46■■□□□ 1.51
CCDC88C-205ENST00000553403 COPS4Q9BT78 406 aa24.46■■□□□ 1.51
CCDC88C-205ENST00000553403 CLN6Q9NWW5 311 aa24.46■■□□□ 1.51
CCDC88C-205ENST00000553403 PCDH15Q96QU1 1955 aa24.45■■□□□ 1.5
CCDC88C-205ENST00000553403 CENPVL1A0A0U1RR11 272 aa24.45■■□□□ 1.5
CCDC88C-205ENST00000553403 H3BN98 237 aa24.45■■□□□ 1.5
CCDC88C-205ENST00000553403 INMTO95050 263 aa24.45■■□□□ 1.5
CCDC88C-205ENST00000553403 MASP1P48740 699 aa24.45■■□□□ 1.5
CCDC88C-205ENST00000553403 ZNF136P52737 540 aa24.45■■□□□ 1.5
CCDC88C-205ENST00000553403 GP2P55259 537 aaKnown RBP24.45■■□□□ 1.5
CCDC88C-205ENST00000553403 FUT7Q11130 342 aa24.45■■□□□ 1.5
CCDC88C-205ENST00000553403 SRSF5Q13243 272 aaKnown RBP24.45■■□□□ 1.5
CCDC88C-205ENST00000553403 ZNF267Q14586 743 aaPredicted RBP24.45■■□□□ 1.5
CCDC88C-205ENST00000553403 GGHQ92820 318 aa24.45■■□□□ 1.5
CCDC88C-205ENST00000553403 OR1F2PQ96R84 312 aa24.45■■□□□ 1.5
CCDC88C-205ENST00000553403 KCNE5Q9UJ90 142 aa24.45■■□□□ 1.5
CCDC88C-205ENST00000553403 GMEB2Q9UKD1 530 aa24.45■■□□□ 1.5
CCDC88C-205ENST00000553403 A0A1B0GTQ1 180 aa24.44■■□□□ 1.5
CCDC88C-205ENST00000553403 CLDN24A6NM45 220 aa24.44■■□□□ 1.5
CCDC88C-205ENST00000553403 SOX14O95416 240 aa24.44■■□□□ 1.5
CCDC88C-205ENST00000553403 MAOAP21397 527 aa24.44■■□□□ 1.5
CCDC88C-205ENST00000553403 ACVR2AP27037 513 aa24.44■■□□□ 1.5
CCDC88C-205ENST00000553403 SSTR4P31391 388 aa24.44■■□□□ 1.5
CCDC88C-205ENST00000553403 ROR2Q01974 943 aaKnown RBP24.44■■□□□ 1.5
CCDC88C-205ENST00000553403 MRPL2Q5T653 305 aaKnown RBP24.44■■□□□ 1.5
CCDC88C-205ENST00000553403 ZNF730Q6ZMV8 503 aa24.44■■□□□ 1.5
CCDC88C-205ENST00000553403 TTLL10Q6ZVT0 673 aa24.44■■□□□ 1.5
CCDC88C-205ENST00000553403 GDF7Q7Z4P5 450 aa24.44■■□□□ 1.5
CCDC88C-205ENST00000553403 OR1L3Q8NH93 324 aa24.44■■□□□ 1.5
CCDC88C-205ENST00000553403 RAB2BQ8WUD1 216 aa24.44■■□□□ 1.5
CCDC88C-205ENST00000553403 ACOT11Q8WXI4 607 aaPredicted RBP24.44■■□□□ 1.5
CCDC88C-205ENST00000553403 CCDC74AQ96AQ1 378 aa24.44■■□□□ 1.5
CCDC88C-205ENST00000553403 ACOT13Q9NPJ3 140 aa24.44■■□□□ 1.5
CCDC88C-205ENST00000553403 LANCL2Q9NS86 450 aa24.44■■□□□ 1.5
CCDC88C-205ENST00000553403 FMO6PO60774 539 aa24.43■■□□□ 1.5
CCDC88C-205ENST00000553403 CDK1P06493 297 aa24.43■■□□□ 1.5
CCDC88C-205ENST00000553403 MAP2K4P45985 399 aa24.43■■□□□ 1.5
CCDC88C-205ENST00000553403 SNAP47Q5SQN1 464 aa24.43■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms