RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 HIPK1Q86Z02 1210 aa19.45■□□□□ 0.7
VPS28-208ENST00000527797 ZSCAN1Q8NBB4 408 aa19.45■□□□□ 0.7
VPS28-208ENST00000527797 WDR77Q9BQA1 342 aaPredicted RBP19.45■□□□□ 0.7
VPS28-208ENST00000527797 MESP1Q9BRJ9 268 aa19.45■□□□□ 0.7
VPS28-208ENST00000527797 SEMA4CQ9C0C4 833 aa19.45■□□□□ 0.7
VPS28-208ENST00000527797 NXF5Q9H1B4 397 aaKnown RBP19.45■□□□□ 0.7
VPS28-208ENST00000527797 VNN3Q9NY84 501 aa19.45■□□□□ 0.7
VPS28-208ENST00000527797 FOXJ2Q9P0K8 574 aa19.45■□□□□ 0.7
VPS28-208ENST00000527797 MRTO4Q9UKD2 239 aaKnown RBP19.45■□□□□ 0.7
VPS28-208ENST00000527797 SAMHD1Q9Y3Z3 626 aaKnown RBP19.45■□□□□ 0.7
VPS28-208ENST00000527797 PCDH17O14917 1159 aa19.44■□□□□ 0.7
VPS28-208ENST00000527797 SEC24DO94855 1032 aaPredicted RBP19.44■□□□□ 0.7
VPS28-208ENST00000527797 TNFSF15O95150 251 aa19.44■□□□□ 0.7
VPS28-208ENST00000527797 UMODP07911 640 aa19.44■□□□□ 0.7
VPS28-208ENST00000527797 RAB40ALP0C0E4 278 aa19.44■□□□□ 0.7
VPS28-208ENST00000527797 CEACAM1P13688 526 aa19.44■□□□□ 0.7
VPS28-208ENST00000527797 FPR1P21462 350 aa19.44■□□□□ 0.7
VPS28-208ENST00000527797 PPP1R8Q12972 351 aaKnown RBP19.44■□□□□ 0.7
VPS28-208ENST00000527797 CPEB4Q17RY0 729 aaKnown RBP eCLIP19.44■□□□□ 0.7
VPS28-208ENST00000527797 EIPR1Q53HC9 387 aa19.44■□□□□ 0.7
VPS28-208ENST00000527797 OTUD3Q5T2D3 398 aaPredicted RBP19.44■□□□□ 0.7
VPS28-208ENST00000527797 DEF8Q6ZN54 512 aa19.44■□□□□ 0.7
VPS28-208ENST00000527797 ZNF836Q6ZNA1 936 aa19.44■□□□□ 0.7
VPS28-208ENST00000527797 ZAR1Q86SH2 424 aa19.44■□□□□ 0.7
VPS28-208ENST00000527797 C8orf44Q96CB5 159 aa19.44■□□□□ 0.7
VPS28-208ENST00000527797 VMP1Q96GC9 406 aa19.44■□□□□ 0.7
VPS28-208ENST00000527797 ARHGDIGQ99819 225 aa19.44■□□□□ 0.7
VPS28-208ENST00000527797 B3GNT4Q9C0J1 378 aa19.44■□□□□ 0.7
VPS28-208ENST00000527797 WWTR1Q9GZV5 400 aa19.44■□□□□ 0.7
VPS28-208ENST00000527797 ARMC7Q9H6L4 198 aa19.44■□□□□ 0.7
VPS28-208ENST00000527797 TESMINQ9Y4I5 508 aa19.44■□□□□ 0.7
VPS28-208ENST00000527797 LOC102723996A0A087X1L8 192 aa19.43■□□□□ 0.7
VPS28-208ENST00000527797 NPIPA5A0A0B4J1W7 369 aa19.43■□□□□ 0.7
VPS28-208ENST00000527797 NPIPA7E9PJI5 369 aa19.43■□□□□ 0.7
VPS28-208ENST00000527797 J3KTA2 159 aa19.43■□□□□ 0.7
VPS28-208ENST00000527797 M0R3H8 397 aa19.43■□□□□ 0.7
VPS28-208ENST00000527797 PEX12O00623 359 aa19.43■□□□□ 0.7
VPS28-208ENST00000527797 EI24O14681 340 aa19.43■□□□□ 0.7
VPS28-208ENST00000527797 TM4SF5O14894 197 aa19.43■□□□□ 0.7
VPS28-208ENST00000527797 UGT2B17O75795 530 aa19.43■□□□□ 0.7
VPS28-208ENST00000527797 IGHEP01854 428 aa19.43■□□□□ 0.7
VPS28-208ENST00000527797 NPIPA8P0DM63 369 aa19.43■□□□□ 0.7
VPS28-208ENST00000527797 TCN2P20062 427 aa19.43■□□□□ 0.7
VPS28-208ENST00000527797 HSPA13P48723 471 aa19.43■□□□□ 0.7
VPS28-208ENST00000527797 PSMD4P55036 377 aaKnown RBP19.43■□□□□ 0.7
VPS28-208ENST00000527797 SPIBQ01892 262 aa19.43■□□□□ 0.7
VPS28-208ENST00000527797 MAPK14Q16539 360 aa19.43■□□□□ 0.7
VPS28-208ENST00000527797 FAM69BQ5VUD6 431 aa19.43■□□□□ 0.7
VPS28-208ENST00000527797 SHQ1Q6PI26 577 aaKnown RBP19.43■□□□□ 0.7
VPS28-208ENST00000527797 TBPL2Q6SJ96 375 aa19.43■□□□□ 0.7
VPS28-208ENST00000527797 HSDL2Q6YN16 418 aa19.43■□□□□ 0.7
VPS28-208ENST00000527797 TMEM179BQ7Z7N9 219 aa19.43■□□□□ 0.7
VPS28-208ENST00000527797 LACC1Q8IV20 430 aa19.43■□□□□ 0.7
VPS28-208ENST00000527797 CLIP4Q8N3C7 705 aa19.43■□□□□ 0.7
VPS28-208ENST00000527797 ESX1Q8N693 406 aa19.43■□□□□ 0.7
VPS28-208ENST00000527797 APCDD1LQ8NCL9 501 aa19.43■□□□□ 0.7
VPS28-208ENST00000527797 OR4D11Q8NGI4 311 aa19.43■□□□□ 0.7
VPS28-208ENST00000527797 CT55Q8WUE5 264 aa19.43■□□□□ 0.7
VPS28-208ENST00000527797 NRBF2Q96F24 287 aa19.43■□□□□ 0.7
VPS28-208ENST00000527797 EPYCQ99645 322 aa19.43■□□□□ 0.7
VPS28-208ENST00000527797 KCNE5Q9UJ90 142 aa19.43■□□□□ 0.7
VPS28-208ENST00000527797 PCDHGA10Q9Y5H3 936 aa19.43■□□□□ 0.7
VPS28-208ENST00000527797 CENPVL1A0A0U1RR11 272 aa19.43■□□□□ 0.7
VPS28-208ENST00000527797 PRKNO60260 465 aaPredicted RBP19.43■□□□□ 0.7
VPS28-208ENST00000527797 NID1P14543 1247 aa19.43■□□□□ 0.7
VPS28-208ENST00000527797 EEF1A1P68104 462 aaKnown RBP19.43■□□□□ 0.7
VPS28-208ENST00000527797 RNF4P78317 190 aa19.43■□□□□ 0.7
VPS28-208ENST00000527797 RBM45Q8IUH3 476 aaKnown RBP19.43■□□□□ 0.7
VPS28-208ENST00000527797 C17orf47Q8NEP4 570 aa19.43■□□□□ 0.7
VPS28-208ENST00000527797 MAGEE2Q8TD90 523 aaPredicted RBP19.43■□□□□ 0.7
VPS28-208ENST00000527797 ZNF597Q96LX8 424 aa19.43■□□□□ 0.7
VPS28-208ENST00000527797 WFDC6Q9BQY6 131 aa19.43■□□□□ 0.7
VPS28-208ENST00000527797 CHST2Q9Y4C5 530 aa19.43■□□□□ 0.7
VPS28-208ENST00000527797 MAGED1Q9Y5V3 778 aaPredicted RBP19.43■□□□□ 0.7
VPS28-208ENST00000527797 TNFRSF11BO00300 401 aa19.42■□□□□ 0.7
VPS28-208ENST00000527797 TO15178 435 aa19.42■□□□□ 0.7
VPS28-208ENST00000527797 IL33O95760 270 aa19.42■□□□□ 0.7
VPS28-208ENST00000527797 NOVA1P51513 510 aaKnown RBP19.42■□□□□ 0.7
VPS28-208ENST00000527797 NR0B1P51843 470 aaKnown RBP19.42■□□□□ 0.7
VPS28-208ENST00000527797 SLC26A5P58743 744 aa19.42■□□□□ 0.7
VPS28-208ENST00000527797 PSPHP78330 225 aa19.42■□□□□ 0.7
VPS28-208ENST00000527797 DAG1Q14118 895 aa19.42■□□□□ 0.7
VPS28-208ENST00000527797 TCTN3Q6NUS6 607 aa19.42■□□□□ 0.7
VPS28-208ENST00000527797 ZNF605Q86T29 641 aa19.42■□□□□ 0.7
VPS28-208ENST00000527797 OR6T1Q8NGN1 323 aa19.42■□□□□ 0.7
VPS28-208ENST00000527797 HSPBAP1Q96EW2 488 aa19.42■□□□□ 0.7
VPS28-208ENST00000527797 NRSN2Q9GZP1 204 aa19.42■□□□□ 0.7
VPS28-208ENST00000527797 ZNF223Q9UK11 482 aaPredicted RBP19.42■□□□□ 0.7
VPS28-208ENST00000527797 KIF26BQ2KJY2 2108 aa19.41■□□□□ 0.7
VPS28-208ENST00000527797 ACADSP16219 412 aa19.41■□□□□ 0.7
VPS28-208ENST00000527797 ALDH3A2P51648 485 aa19.41■□□□□ 0.7
VPS28-208ENST00000527797 ATP12AP54707 1039 aa19.41■□□□□ 0.7
VPS28-208ENST00000527797 CDH12P55289 794 aa19.41■□□□□ 0.7
VPS28-208ENST00000527797 RPS15P62841 145 aaKnown RBP19.41■□□□□ 0.7
VPS28-208ENST00000527797 GANABQ14697 944 aaKnown RBP19.41■□□□□ 0.7
VPS28-208ENST00000527797 ZNF141Q15928 474 aa19.41■□□□□ 0.7
VPS28-208ENST00000527797 RNF220Q5VTB9 566 aa19.41■□□□□ 0.7
VPS28-208ENST00000527797 HS3ST5Q8IZT8 346 aa19.41■□□□□ 0.7
VPS28-208ENST00000527797 NLGN4XQ8N0W4 816 aa19.41■□□□□ 0.7
VPS28-208ENST00000527797 ZNF441Q8N8Z8 693 aa19.41■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms